Compare commits

339 Commits

Author SHA1 Message Date
allegroai
a936a210e8 Version bump to 0.17.0 2021-01-05 20:08:19 +02:00
allegroai
be0cf0caa8 Unify v0.17 migrations 2021-01-05 20:07:49 +02:00
allegroai
a8d90887e2 Fix task execution queue is not cleared on clone 2021-01-05 20:07:04 +02:00
allegroai
6f3257fed3 Fix X-ClearML headers to X-Clearml 2021-01-05 20:06:36 +02:00
allegroai
4bb8834551 Move docker-compose files to docker folder
Move legacy Trains Server docker-compose files to docker/legacy/trains-server
2021-01-05 19:07:05 +02:00
allegroai
286b8c3df5 Change default company name to "clearml" 2021-01-05 19:05:11 +02:00
allegroai
16430a6636 Support query by task state in projects.get_tasks_parents, return task project names 2021-01-05 19:02:48 +02:00
allegroai
d7ddfde26e Fix tasks.failed error for task that was never started 2021-01-05 19:01:43 +02:00
allegroai
e6c0f1b6d8 Add migration: remove outdated user email index from db 2021-01-05 18:55:10 +02:00
allegroai
641ed1b510 Fix basic config not throwing missing key exception when no default passed 2021-01-05 18:54:13 +02:00
allegroai
e29ad4c9b2 Add DELETE support
Fix setting upload folder when running with gunicorn
2021-01-05 18:53:23 +02:00
allegroai
3473d2bb02 Update PyJWT requirement (2.0.0 breaks interface) 2021-01-05 18:52:32 +02:00
allegroai
ba03924cb4 Fix archived and development system tags should not be cleaned up 2021-01-05 18:52:12 +02:00
allegroai
6870d8aba9 Refactor service_repo
Code cleanup
2021-01-05 18:50:42 +02:00
allegroai
64c63d2560 Add projects.get_task_parents 2021-01-05 18:49:25 +02:00
allegroai
88836fae66 Allow parent query in tasks.get_all 2021-01-05 18:48:25 +02:00
allegroai
436883148b Improve schema reader 2021-01-05 18:47:32 +02:00
allegroai
f9f2f0ccf0 Add request model detection in endpoint decorator 2021-01-05 18:47:01 +02:00
allegroai
f879f6924f Better exception log 2021-01-05 18:36:25 +02:00
allegroai
b9cb587580 Support docker_init_script in Task 2021-01-05 18:35:32 +02:00
allegroai
370e92c3dd Use sparse index for email addresses 2021-01-05 18:34:46 +02:00
allegroai
03094076c8 Fix tags handling fail reloading datetime-like strings 2021-01-05 18:32:18 +02:00
allegroai
bdf6c353bd Refactor APICall and schema validation 2021-01-05 18:30:59 +02:00
allegroai
23736efbc3 Add support for ClearML headers 2021-01-05 18:29:50 +02:00
allegroai
3c8e27dc94 Unify server request handlers 2021-01-05 18:28:43 +02:00
allegroai
ca890c7ae8 Remove dependency on api_version 2021-01-05 18:27:31 +02:00
allegroai
30909df73f Fix tasks.clone schema
Reintroduce email field uniqueness
2021-01-05 18:26:14 +02:00
allegroai
b97a6084ce Refactor configuration infrastructure
Remove untracked files left from previous commit
2021-01-05 18:25:18 +02:00
allegroai
50438bd931 Refactor apierrors infrastructure and auto-generation 2021-01-05 18:22:39 +02:00
allegroai
28daf49c91 Remove unique company name constraint 2021-01-05 18:21:49 +02:00
allegroai
4707647c92 Use EVENT_TYPE enum instead of string 2021-01-05 18:21:11 +02:00
allegroai
6974aa3a99 Improve internal events implementation 2021-01-05 18:20:38 +02:00
allegroai
e2deff4eef Fix update project time on task changes
Fix project time in non responsive tasks watchdog
2021-01-05 18:19:45 +02:00
allegroai
59994ccf9c Fix task and model last_change handling
Improve db model index
Improve db model infrastructure
2021-01-05 18:17:29 +02:00
allegroai
29c792d459 Fix tasks.clone 2021-01-05 18:15:01 +02:00
allegroai
df334d083e Add error message
Improve error handling
2021-01-05 18:14:29 +02:00
allegroai
b548958c80 Improve login.supported_modes
Fix schema
2021-01-05 18:13:43 +02:00
allegroai
7bdf8fe30d Fix DictField deserialization 2021-01-05 18:12:32 +02:00
allegroai
c71c65be87 Fix crash in auth.get_credentials if any of the credentials is missing last_used 2021-01-05 18:12:13 +02:00
allegroai
1cc6a8f787 Unify API model classes 2021-01-05 18:11:22 +02:00
allegroai
e5b92f4a80 Block users management in Redis 2021-01-05 18:10:32 +02:00
allegroai
3272d0f31f Rename migration script
Support refresh flag in debug image samples
Remove silent_dequeue_fail param to prevent status change in case task wasn't queued
Add organizations.get_user_companies
Fix reset should also reset active_duration
Add api_version to server.info
2021-01-05 18:09:34 +02:00
allegroai
618a0b9473 Do not set Task.last_update when moving or updating (i.e. changing name, comment, tags etc.) 2021-01-05 18:06:04 +02:00
allegroai
bca3a6e556 Set default task active duration to None
Move endpoints to new API version
Support tasks.move and models.move for moving tasks and models into projects
Support new project name in tasks.clone
Improve task active duration migration
2021-01-05 18:05:44 +02:00
allegroai
8b0afd47a6 Set configurable and consistent limits on variants and metrics across different iterators 2021-01-05 18:02:01 +02:00
allegroai
0303c3525f API version bump
Update internal tests
Allow edit/delete task artifacts/hyperparams/configs using force flag
Improve lists query support for get_all calls
2021-01-05 17:57:58 +02:00
allegroai
563c451ac9 Add task active duration migration 2021-01-05 17:53:44 +02:00
allegroai
91b1b34a6b Update configuration for debug images 2021-01-05 17:53:16 +02:00
allegroai
0ad0495733 Add tasks.archive support 2021-01-05 17:49:08 +02:00
allegroai
03ae90c4a6 API version bump 2021-01-05 17:48:07 +02:00
allegroai
be788965e0 Fix using reserved keywords as atrifact/hyperparams/configuration names
Replace events.get_debug_image_event and event.get_debug_image_iterations with events.get_debug_image_sample and events.next_debug_image_sample
2021-01-05 17:47:27 +02:00
allegroai
d198138c5b Support projection for task parent 2021-01-05 17:45:33 +02:00
allegroai
cf441987af Add tasks.get_by_id_ex and models.get_by_id_ex 2021-01-05 17:44:59 +02:00
allegroai
b89de43373 Support sorting by task active duration 2021-01-05 17:44:17 +02:00
allegroai
0ef018c931 More secure auth.create_user and auth.get_token_for_user 2021-01-05 17:43:30 +02:00
allegroai
323b5db07c Add support for debug images history using events.get_debug_image_event and events.get_debug_image_iterations
Remove untracked files
2021-01-05 17:42:05 +02:00
allegroai
f084f6b9e7 Fix get_hyperparams and unique_metric_params handling of public tasks 2021-01-05 17:38:50 +02:00
allegroai
eb4c9f0b13 Fix batch events counting 2021-01-05 17:37:40 +02:00
allegroai
018582ff8a Support download flag 2021-01-05 17:31:24 +02:00
allegroai
7dcc0f6df2 Improve prepopulate 2021-01-05 17:30:37 +02:00
allegroai
5e0893dd80 Fix Elastic log filter 2021-01-05 17:12:57 +02:00
allegroai
ca81922651 Move login service 2021-01-05 17:11:51 +02:00
allegroai
07cc2fb08b Fix endpoint version 2021-01-05 17:08:46 +02:00
allegroai
842654d3fe Fix error generation 2021-01-05 17:08:05 +02:00
allegroai
00e5e2a0b1 Fix loading services 2021-01-05 17:07:33 +02:00
allegroai
37e5d8a7e0 Fix ParseError import with new luqum version
Fix incorrect strip to task diff and requirements
Add missing property to server.report_stats_option response
Add active_duration parameter for tasks
Move artifacts info dictionary structure
2021-01-05 17:07:14 +02:00
allegroai
5b1f468957 Support distributed lock on db init 2021-01-05 16:59:55 +02:00
allegroai
9103bf7984 Improve utilities 2021-01-05 16:58:57 +02:00
allegroai
e848d05677 Fix PEP8 in errors generator 2021-01-05 16:57:05 +02:00
allegroai
1c7de3a86e Add worker runtime properties support
Refactor login and add guest mode
Support artifacts in prepopulate
2021-01-05 16:56:08 +02:00
allegroai
e12fd8f3df Improve projects order 2021-01-05 16:46:23 +02:00
allegroai
29ef134b79 Resolve database module naming ambiguity 2021-01-05 16:45:22 +02:00
allegroai
e24389fda9 Add configuration loader 2021-01-05 16:44:31 +02:00
allegroai
f4ead86449 Add support for returning only valid plot events 2021-01-05 16:41:55 +02:00
allegroai
171969c5ea Optimize task artifacts 2021-01-05 16:40:35 +02:00
allegroai
89f81bfe5a Refactor app routes registration 2021-01-05 16:32:21 +02:00
allegroai
b8e62f27e2 Refactor database into a separate class 2021-01-05 16:31:25 +02:00
allegroai
c7bbac73d0 Refactor es_factory into a separate class 2021-01-05 16:29:25 +02:00
allegroai
f832ea565a Use apiserver namespace 2021-01-05 16:28:49 +02:00
allegroai
22e9c2b7eb Fix type annotations
Fix obtaining events for tasks moved from private to public
Fix assert_exists() to return company_origin if requested
2021-01-05 16:27:38 +02:00
allegroai
c67a56eb8d Introduce app startup sequence 2021-01-05 16:25:17 +02:00
allegroai
df65e1c7ad Rename server to apiserver 2021-01-05 16:22:34 +02:00
allegroai
01115c1223 Change default Elastic ports to 9200 2021-01-05 16:20:48 +02:00
Allegro AI
6de88c3b93 Update README.md 2020-12-25 04:29:31 +02:00
Allegro AI
9d77827252 Update README.md 2020-12-23 01:43:25 +02:00
Allegro AI
76fb97624d Update README.md 2020-12-23 01:42:50 +02:00
allegroai
20d6582f51 Add missing logo 2020-12-22 23:15:41 +02:00
allegroai
7ebda33793 Update readme, trains-agent to clearml-agent 2020-12-22 23:14:48 +02:00
allegroai
953124aa37 Lower ES watermark to 2gb 2020-12-02 16:20:10 +02:00
allegroai
ba3451ce5a Update docker-compose files: set low ES watermarks, don't expose ES, Redis and MongoDB ports by default 2020-12-01 10:41:29 +02:00
allegroai
b93591ec32 Improve startup sequence 2020-08-24 14:05:48 +03:00
allegroai
0abfd8da0d Version bump to v0.16.1 2020-08-23 15:43:38 +03:00
allegroai
a9cc4e36c6 Update docs 2020-08-23 15:41:05 +03:00
allegroai
fe1c963eec Fix internal export utility 2020-08-23 15:40:57 +03:00
allegroai
111d80e88d Add migration to verify correct project ordering 2020-08-23 15:39:36 +03:00
allegroai
6718862dbe Update fixed user name if user already exists 2020-08-23 15:38:53 +03:00
allegroai
0fe1bf8a61 Add elasticsearch log filtering while trying to connect 2020-08-23 15:38:22 +03:00
allegroai
10f326eda9 Fix KeyError when accessing log results in events.get_task_logs 2020-08-23 15:36:43 +03:00
allegroai
cd0d6c1a3d Fix max buckets calculation for iters histogram 2020-08-23 15:34:59 +03:00
allegroai
3205f2df97 Add services.tasks.multi_task_histogram_limit configuration option 2020-08-23 15:30:32 +03:00
allegroai
5bdbcfcd8d Update README and docker-compose files for v0.16.0 2020-08-10 23:48:38 +03:00
allegroai
a2e2052b30 Version bump 2020-08-10 08:56:50 +03:00
allegroai
0146ded4f4 Fix empty projection handling 2020-08-10 08:56:43 +03:00
allegroai
dccf9dd8f8 Fix incorrect formatted timestamp in events.download_task_log 2020-08-10 08:55:01 +03:00
allegroai
7816b402bb Enhance ES7 initialization and migration support
Support older task hyper-parameter migration on pre-population
2020-08-10 08:53:41 +03:00
allegroai
cd4ce30f7c Add support for field exclusion in get_all endpoints
Add support for ephemeral worker tags (valid while worker has not timed out)
2020-08-10 08:48:48 +03:00
allegroai
8c7e230898 Add support for Task hyper-parameter sections and meta-data
Add new Task configuration section
2020-08-10 08:45:25 +03:00
allegroai
42ba696518 Support order parameter in events.get_task_log 2020-08-10 08:37:41 +03:00
allegroai
3f84e60a1f Add debug.ping endpoint
Optimize exhausted scrolls by using a fixed empty scroll
2020-08-10 08:35:34 +03:00
allegroai
baba8b5b73 Move to ElasticSearch 7
Add initial support for project ordering
Add support for sortable task duration (used by the UI in the experiment's table)
Add support for project name in worker's current task info
Add support for results and artifacts in pre-populates examples
Add demo server features
2020-08-10 08:30:40 +03:00
Allegro AI
77397c4f21 Update docker-compose.yml 2020-07-09 13:21:44 +03:00
allegroai
8678091d8f Fix documentation, remove sudo from docker-compose up (issue #48) 2020-07-06 22:07:59 +03:00
allegroai
aa22170ab4 Fix support for example projects and experiments in demo server 2020-07-06 22:06:42 +03:00
allegroai
901ec37290 Improve pre-populate on server startup (including sync lock) 2020-07-06 22:05:36 +03:00
allegroai
21f2ea8b17 Add events.get_task_log for improved log retrieval support 2020-07-06 21:54:25 +03:00
allegroai
8219e3d4e2 Fix trains-agent-services default ubuntu docker to support unicode in tty 2020-07-06 21:52:32 +03:00
allegroai
3ed71a61d5 Add models.get_frameworks endpoint 2020-07-06 21:50:43 +03:00
allegroai
18a88a8e8f Update AWS AMIs 2020-06-24 23:15:47 +03:00
allegroai
318a72987c Update GCP images for v0.15.1 2020-06-22 13:00:30 +03:00
allegroai
5ce202cc99 Update AWS AMIs for v0.15.1 2020-06-22 00:58:11 +03:00
allegroai
d09528bc26 Version bump to v0.15.1 2020-06-21 23:58:07 +03:00
allegroai
42d2a41dbe Update docker compose files 2020-06-21 23:57:58 +03:00
allegroai
82be1840b0 Add fileserver default cache timeout for downloaded files 2020-06-21 23:55:52 +03:00
allegroai
27352c5cb6 Fix last metrics values for the multiple iterations in the same events batch 2020-06-21 23:54:53 +03:00
allegroai
1ea6408d41 Support tags-per-project in tags related services 2020-06-21 23:54:05 +03:00
allegroai
5e095af3aa Fix server unable to create fixed users due to incorrect access to user_data["key"] 2020-06-21 23:52:01 +03:00
allegroai
ab3dceed92 Fix docker-compose mongodb setup on Windows 10 2020-06-16 23:59:59 +03:00
Allegro AI
3bf5126d84 Update README.md 2020-06-03 03:51:11 +03:00
allegroai
ab2ab7b23a Update GCP Images for v0.15.0 2020-06-02 16:50:52 +03:00
allegroai
c9184d125b Update AWS AMIs for v0.15.0 2020-06-02 16:17:03 +03:00
allegroai
0c0fdb72b9 Update docker-compose.yml 2020-06-02 13:20:04 +03:00
Allegro AI
86378053d4 Update docker-compose.yml 2020-06-02 01:29:55 +03:00
Allegro AI
b1cbba0cf1 Update README.md 2020-06-02 00:46:01 +03:00
Allegro AI
f31526042d Update README.md 2020-06-02 00:36:35 +03:00
Allegro AI
3f8d5bc346 Update README.md 2020-06-02 00:21:32 +03:00
allegroai
11d76e7d8c Update AWS AMIs for v0.15.0 2020-06-01 23:07:38 +03:00
allegroai
e76c0fbc63 Version bump to 0.15.0 2020-06-01 22:20:58 +03:00
allegroai
fdc9956da3 Update trains-agent-services docker image 2020-06-01 21:53:33 +03:00
allegroai
f4addaa653 Add new services mode agent container to the docker-compose 2020-06-01 21:02:49 +03:00
allegroai
667964cc82 Add clear_all flag to tasks.reset 2020-06-01 13:07:35 +03:00
allegroai
e1309e30b7 Fix UPLOAD_FOLDER handling when provided as env var or when fileserver is run by gunicorn 2020-06-01 13:05:45 +03:00
allegroai
9403942ef7 Add support for additional task types as well as tasks.get_types to obtain actual types used globally or per project 2020-06-01 13:05:12 +03:00
allegroai
84a75d9e70 Add server uid to server.info response in API v2.8 2020-06-01 13:01:31 +03:00
allegroai
c85ab66ae6 Add organization.get_tags to obtain the set of all used task, model, queue and project tags 2020-06-01 13:00:35 +03:00
allegroai
bf7f0f646b Sort hyper parameters numeric values as numbers and not strings 2020-06-01 12:27:56 +03:00
allegroai
dcdf2a3d58 Fix task can't be cloned if input model was deleted 2020-06-01 12:23:29 +03:00
allegroai
f8d8fc40a6 Support filtering users by activity in projects 2020-06-01 11:55:40 +03:00
allegroai
45d434a123 When clearing a task do not delete draft models used by other tasks 2020-06-01 11:51:43 +03:00
allegroai
1834abe5bc Better handling of execution parameter paths 2020-06-01 11:49:35 +03:00
allegroai
d6321588f3 Fix role checked for endpoints not requiring authorization 2020-06-01 11:43:55 +03:00
allegroai
c17b10ff1d Revoke built-in webserver system-role credentials (used by the WebApp) in case we're running in fixed-mode 2020-06-01 11:41:43 +03:00
allegroai
b125a56f86 Make sure configuration path loaded from an environment variable name is lower-case 2020-06-01 11:40:34 +03:00
allegroai
c43ce3a17b Update 0.15 mongo migration to drop indices (so new ones will be automatically created) 2020-06-01 11:36:22 +03:00
allegroai
b0b09616a8 Fix single bad event causes events.add_batch to skip remaining events 2020-06-01 11:33:39 +03:00
allegroai
ede5586ccc Extract non-responsive tasks watchdog from main tasks logic 2020-06-01 11:31:36 +03:00
allegroai
a1dcdffa53 Update pymongo and mongoengine versions 2020-06-01 11:29:50 +03:00
allegroai
35a11db58e Support task log retrieval with no scroll 2020-06-01 11:27:36 +03:00
allegroai
d9bdebefc7 Update AWS AMIs 2020-05-14 17:54:30 +03:00
allegroai
f29884f05a Version bump to v0.14.2 2020-05-14 17:53:56 +03:00
allegroai
0f72d662f8 Update GCP documentation 2020-05-04 17:31:11 +03:00
allegroai
6202219034 Update README 2020-05-03 11:08:21 +03:00
allegroai
bb3218f65d Update GCP installation instructions 2020-04-06 12:59:29 +03:00
allegroai
cbcaa7c789 Add MongoDB performance optimization 2020-04-01 19:20:53 +03:00
allegroai
427322a424 Update schema 2020-04-01 19:16:34 +03:00
allegroai
0e7d7d36a9 Update docs for GCP Custom Images 2020-03-30 15:51:58 +03:00
allegroai
06032a6d66 Update documentation 2020-03-20 10:51:43 +02:00
allegroai
b48f4eb2eb Make sure time intervals are calculated in ms 2020-03-20 10:50:56 +02:00
Allegro AI
383b2666c4 Update AWS AMIs 2020-03-16 21:57:07 +02:00
allegroai
50c373cf0d Version bump to v0.14.1 2020-03-16 18:47:35 +02:00
allegroai
394a9de5fa Update docs with AMI IDs for v0.14.1 2020-03-16 18:47:20 +02:00
allegroai
fb5c06e9c3 Version bump to v0.14.0 2020-03-05 20:03:48 +02:00
allegroai
1a9bbc9420 Update docs with AMI IDs for v0.14.0 2020-03-05 20:03:33 +02:00
allegroai
294da32401 Fix getting empty metrics from task 2020-03-05 14:57:20 +02:00
allegroai
7f00672010 Fix missing routing value when downloading tasks events 2020-03-05 14:55:40 +02:00
allegroai
99bf89a360 Add pre-populate feature to allow starting a new server installation with packaged example experiments 2020-03-05 14:54:34 +02:00
allegroai
6c8508eb7f Add support for pagination in events.debug_images 2020-03-01 18:00:07 +02:00
allegroai
69714d5b5c Use top-level module for api version number instead of a fixed value 2020-03-01 17:51:03 +02:00
allegroai
f9516ec7d3 Fix ActualEnumField initialization in case default was not provided 2020-03-01 17:47:47 +02:00
allegroai
6fdde93dee Add migration script 2020-03-01 17:46:10 +02:00
allegroai
7afc71ec91 Update requirements 2020-02-26 17:26:59 +02:00
allegroai
4595117d91 Support setting fileserver upload folder using an environment variable 2020-02-26 17:26:46 +02:00
allegroai
8630cc1021 Fix queue update time to update when task is taken from queue, not when queried 2020-02-20 18:26:56 +02:00
allegroai
135885b609 Improve unit test for entity ordering 2020-02-04 18:21:13 +02:00
allegroai
eb0865662c Fix projects aggregation on tasks with invalid status 2020-02-04 18:21:04 +02:00
allegroai
b7b94e7ae5 Add more validation when parsing task call 2020-02-04 18:19:07 +02:00
allegroai
72be8bee19 Limit metrics and variants to avoid ES error 2020-02-04 18:18:26 +02:00
allegroai
0722b20c1c Fix task scalars comparison aggregation 2020-02-04 18:16:27 +02:00
allegroai
a392a0e6ff Fix request field required constraint 2020-02-04 18:12:30 +02:00
allegroai
e22fa2f478 Limit dpath requirement 2020-02-04 18:09:55 +02:00
allegroai
8b49c1ac06 Update docs with AWS AMI IDs for v0.13.0 2020-01-07 14:40:09 +02:00
allegroai
da1182a405 Update docs with AWS AMI IDs for v0.13.0 2020-01-06 18:41:09 +02:00
allegroai
53e995ee8c Version bump to v0.13.0 2020-01-06 15:28:31 +02:00
allegroai
4732dc1a88 Remove deprecated env vars from docker compose files 2020-01-06 12:23:06 +02:00
allegroai
e325bcaf67 Hash ROI id to make sure it does not violate Elastic's 512 bytes id limitation 2020-01-05 09:20:38 +02:00
allegroai
a7c30453db Update documentation 2020-01-05 09:19:37 +02:00
allegroai
dedac3b2fe Allow using "$", "." and whitespaces in hyper-parameter keys 2020-01-02 15:28:50 +02:00
allegroai
7d10bbdf8e Update requirement 2020-01-02 15:27:04 +02:00
allegroai
72213dffa4 Update migration to convert user preferences to JSON 2020-01-02 15:26:45 +02:00
allegroai
f778837d4b Change the way user preferences are stored (JSON instead of plain dict) 2020-01-02 15:23:47 +02:00
allegroai
153ed6a7b7 Update documentation 2020-01-02 15:21:35 +02:00
allegroai
5d279c8c5a Add fixed user validation
Fix the way a fixed user id is generated
2020-01-02 15:20:55 +02:00
allegroai
ed910d5f6a Improve server threads shutdown on SIGTERM 2019-12-29 09:04:07 +02:00
allegroai
87d2b6fa15 Add some missing definitions 2019-12-29 09:03:19 +02:00
allegroai
94cfb17291 Add minor updates 2019-12-29 09:02:32 +02:00
allegroai
3f641d37b7 Optimize empty schema validator usage 2019-12-29 08:59:52 +02:00
allegroai
551be12f01 Move mongodb migrations inside the server's folder 2019-12-29 08:58:54 +02:00
allegroai
b536020058 Update documentation 2019-12-29 08:47:47 +02:00
Allegro AI
fb6fbc0a06 Update README.md 2019-12-25 14:21:16 +02:00
allegroai
5ae64fd791 Add support for tasks.clone 2019-12-24 18:01:48 +02:00
allegroai
f9776e4319 Allow two users to have the same full name 2019-12-24 17:58:59 +02:00
allegroai
75e736e7d5 Update readme files 2019-12-24 17:58:02 +02:00
allegroai
1e4756aa1d Add support for atomic add/update of task artifacts 2019-12-24 17:57:26 +02:00
allegroai
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allegroai
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allegroai
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Server Side Public License
VERSION 1, OCTOBER 16, 2018
Copyright © 2018 MongoDB, Inc.
Copyright © 2019 allegro.ai, Inc.
Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.

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# TRAINS Server
<div align="center">
## Magic Version Control & Experiment Manager for AI
<img src="docs/clearml_server_logo.png" width="250px">
## Introduction
**ClearML - Auto-Magical Suite of tools to streamline your ML workflow
</br>Experiment Manager, ML-Ops and Data-Management**
The **trains-server** is the infrastructure for [trains](https://github.com/allegroai/trains).
It allows multiple users to collaborate and manage their experiments.
The **trains-server** contains the following components:
[![GitHub license](https://img.shields.io/badge/license-SSPL-green.svg)](https://img.shields.io/badge/license-SSPL-green.svg)
[![Python versions](https://img.shields.io/badge/python-3.6%20%7C%203.7-blue.svg)](https://img.shields.io/badge/python-3.6%20%7C%203.7-blue.svg)
[![GitHub version](https://img.shields.io/github/release-pre/allegroai/trains-server.svg)](https://img.shields.io/github/release-pre/allegroai/trains-server.svg)
* the Web-App which is a single-page UI for experiment management and browsing
* a REST interface for:
* documenting and logging experiment information, statistics and results
* querying experiments history, logs and results
* a locally-hosted file server for storing images and models making them easily accessible using the Web-App
</div>
You can quickly setup your **trains-server** using a pre-built Docker image (see [Installation](#installation)).
---
<div align="center">
When new releases are available, you can upgrade your pre-built Docker image (see [Upgrade](#upgrade)).
**v0.16 Upgrade Notice**
The **trains-server's** code is freely available [here](https://github.com/allegroai/trains-server).
</div>
## System diagram
In v0.16, the Elasticsearch subsystem of ClearML Server has been upgraded from version 5.6 to version 7.6. This change necessitates the migration of the database contents to accommodate the change in index structure across the different versions.
<pre>
TRAINS-server
+--------------------------------------------------------------------+
| |
| Server Docker Elastic Docker Mongo Docker |
| +-------------------------+ +---------------+ +------------+ |
| | Pythonic Server | | | | | |
| | +-----------------+ | | ElasticSearch | | MongoDB | |
| | | WEB server | | | | | | |
| | | Port 8080 | | | | | | |
| | +--------+--------+ | | | | | |
| | | | | | | | |
| | +--------+--------+ | | | | | |
| | | API server +----------------------------+ | |
| | | Port 8008 +---------+ | | | |
| | +-----------------+ | +-------+-------+ +-----+------+ |
| | | | | |
| | +-----------------+ | +---+----------------+------+ |
| | | File Server +-------+ | Host Storage | |
| | | Port 8081 | | +-----+ | |
| | +-----------------+ | +---------------------------+ |
| +------------+------------+ |
+---------------|----------------------------------------------------+
|HTTP
+--------+
GPU Machine |
+------------------------|-------------------------------------------+
| +------------------|--------------+ |
| | Training | | +---------------------+ |
| | Code +---+------------+ | | trains configuration| |
| | | TRAINS | | | ~/trains.conf | |
| | | +------+ | |
| | +----------------+ | +---------------------+ |
| +---------------------------------+ |
+--------------------------------------------------------------------+
</pre>
Follow [this procedure](https://allegro.ai/docs/deploying_trains/trains_server_es7_migration/) to migrate existing data.
## Installation
---
This section contains the instructions to setup and launch a pre-built Docker image for the **trains-server**.
### ClearML Server
#### *Formerly known as Trains Server*
**Note**: This Docker image was tested with Linux, only. For Windows users, we recommend running the server
on a Linux virtual machine.
The **ClearML Server** is the backend service infrastructure for [ClearML](https://github.com/allegroai/clearml).
It allows multiple users to collaborate and manage their experiments.
By default, **ClearML** is set up to work with the **ClearML** demo server, which is open to anyone and resets periodically.
In order to host your own server, you will need to launch the **ClearML Server** and point **ClearML** to it.
The **ClearML Server** contains the following components:
* The **ClearML** Web-App, a single-page UI for experiment management and browsing
* RESTful API for:
* Documenting and logging experiment information, statistics and results
* Querying experiments history, logs and results
* Locally-hosted file server for storing images and models making them easily accessible using the Web-App
You can quickly [deploy](#launching-the-clearml-server) your **ClearML Server** using Docker, AWS EC2 AMI, or Kubernetes.
## System design
![Alt Text](https://allegro.ai/clearml/docs/_images/ClearML_Server_Diagram.png)
The **ClearML Server** has two supported configurations:
- Single IP (domain) with the following open ports
- Web application on port 8080
- API service on port 8008
- File storage service on port 8081
- Sub-Domain configuration with default http/s ports (80 or 443)
- Web application on sub-domain: app.\*.\*
- API service on sub-domain: api.\*.\*
- File storage service on sub-domain: files.\*.\*
## Launching The ClearML Server
### Prerequisites
You must be logged in as a user with sudo privileges.
### Setup
The ports 8080/8081/8008 must be available for the **ClearML Server** services.
For example, to see if port `8080` is in use:
#### Step 1. Install Docker CE
* Linux or macOS:
sudo lsof -Pn -i4 | grep :8080 | grep LISTEN
You must install Docker to run the pre-packaged **trains-server**.
* Windows:
* For [Ubuntu](https://docs.docker.com/install/linux/docker-ce/ubuntu/) / Mint (x86_64/amd64):
netstat -an |find /i "8080"
### Launching
Launch The **ClearML Server** in any of the following formats:
```bash
sudo apt-get install -y apt-transport-https ca-certificates curl software-properties-common
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
. /etc/os-release
sudo add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu $UBUNTU_CODENAME stable"
sudo apt-get update
sudo apt-get install -y docker-ce
```
- Pre-built [AWS EC2 AMI](https://allegro.ai/docs/deploying_trains/trains_server_aws_ec2_ami/)
- Pre-built [GCP Custom Image](https://allegro.ai/docs/deploying_trains/trains_server_gcp/)
- Pre-built Docker Image
- [Linux](https://allegro.ai/docs/deploying_trains/trains_server_linux_mac/)
- [macOS](https://allegro.ai/docs/deploying_trains/trains_server_linux_mac/)
- [Windows 10](https://allegro.ai/docs/deploying_trains/trains_server_win/)
- Kubernetes
- [Kubernetes Helm](https://allegro.ai/docs/deploying_trains/trains_server_kubernetes_helm/)
- Manual [Kubernetes installation](https://allegro.ai/docs/deploying_trains/trains_server_kubernetes/)
* For other operating systems, see [Supported platforms](https://docs.docker.com/install//#support) in the Docker documentation for instructions.
## Connecting ClearML to your ClearML Server
#### Step 2. Setup the Docker daemon
By default, the **ClearML** client is set up to work with the [**ClearML** demo server](https://demoapp.demo.clear.ml/).
To have the **ClearML** client use your **ClearML Server** instead:
- Run the `clearml-init` command for an interactive setup.
- Or manually edit `~/clearml.conf` file, making sure the server settings (`api_server`, `web_server`, `file_server`) are configured correctly, for example:
To run the ElasticSearch Docker container, you must setup the Docker daemon by modifing the default
values required by Elastic in your Docker configuration file
that are used by the **trains-server**. We provide instructions for the most common Docker configuration files.
api {
# API server on port 8008
api_server: "http://localhost:8008"
You must edit or create a Docker configuration file:
# web_server on port 8080
web_server: "http://localhost:8080"
* If your Docker configuration file is `/etc/sysconfig/docker`, edit it.
Add the options in quotes to the available arguments in the `OPTIONS` section:
```bash
OPTIONS="--default-ulimit nofile=1024:65536 --default-ulimit memlock=-1:-1"
```
* Otherwise, edit `/etc/docker/daemon.json` (if it exists) or create it (if it does not exist).
Add or modify the `defaults-ulimits` section as shown below. Be sure your configuration file contains the `nofile` and `memlock` sub-sections and values shown.
**Note**: Your configuration file may contain other sections. If so, confirm that the sections are separated by commas. For more information about Docker configuration files, see an [Daemon configuration file](https://docs.docker.com/engine/reference/commandline/dockerd/#daemon-configuration-file) in the Docker documentation.
The **trains-server** required defaults values are:
```json
{
"default-ulimits": {
"nofile": {
"name": "nofile",
"hard": 65536,
"soft": 1024
},
"memlock":
{
"name": "memlock",
"soft": -1,
"hard": -1
# file server on port 8081
files_server: "http://localhost:8081"
}
}
}
```
#### Step 3. Restart the Docker daemon
**Note**: If you have set up your **ClearML Server** in a sub-domain configuration, then there is no need to specify a port number,
it will be inferred from the http/s scheme.
You must restart the Docker daemon after modifying the configuration file:
After launching the **ClearML Server** and configuring the **ClearML** client to use the **ClearML Server**,
you can [use](https://github.com/allegroai/clearml) **ClearML** in your experiments and view them in your **ClearML Server** web server,
for example http://localhost:8080.
For more information about the ClearML client, see [**ClearML**](https://github.com/allegroai/clearml).
```bash
sudo service docker stop
sudo service docker start
```
## ClearML-Agent Services <a name="services"></a>
#### Step 4. Set the Maximum Number of Memory Map Areas
As of version 0.15 of **ClearML Server**, dockerized deployment includes a **ClearML-Agent Services** container running as
part of the docker container collection.
The maximum number of memory map areas a process can use is defined
using the `vm.max_map_count` kernel setting.
ClearML-Agent Services is an extension of ClearML-Agent that provides the ability to launch long-lasting jobs
that previously had to be executed on local / dedicated machines. It allows a single agent to
launch multiple dockers (Tasks) for different use cases. To name a few use cases, auto-scaler service (spinning instances
when the need arises and the budget allows), Controllers (Implementing pipelines and more sophisticated DevOps logic),
Optimizer (such as Hyper-parameter Optimization or sweeping), and Application (such as interactive Bokeh apps for
increased data transparency)
Elastic requires that `vm.max_map_count` to be at least 262144.
ClearML-Agent Services container will spin **any** task enqueued into the dedicated `services` queue.
Every task launched by ClearML-Agent Services will be registered as a new node in the system,
providing tracking and transparency capabilities.
You can also run the ClearML-Agent Services manually, see details in [ClearML-agent services mode](https://github.com/allegroai/clearml-agent#clearml-agent-services-mode-)
* For CentOS 7, Ubuntu 16.04, Mint 18.3, Ubuntu 18.04 and Mint 19 users, we tested the following commands to set
`vm.max_map_count`:
**Note**: It is the user's responsibility to make sure the proper tasks are pushed into the `services` queue.
Do not enqueue training / inference tasks into the `services` queue, as it will put unnecessary load on the server.
```bash
sudo echo "vm.max_map_count=262144" > /tmp/99-trains.conf
sudo mv /tmp/99-trains.conf /etc/sysctl.d/99-trains.conf
sudo sysctl -w vm.max_map_count=262144
```
## Advanced Functionality
* For information about setting this parameter on other systems, see the [elastic](https://www.elastic.co/guide/en/elasticsearch/reference/current/docker.html#docker-cli-run-prod-mode) documentation.
The **ClearML Server** provides a few additional useful features, which can be manually enabled:
* [Web login authentication](https://allegro.ai/clearml/docs/deploying_clearml/clearml_server_config/#web-login-authentication)
* [Non-responsive experiments watchdog](https://allegro.ai/clearml/docs/deploying_clearml/clearml_server_config/#task_watchdog)
#### Step 5. Choose a Data Directory
## Restarting ClearML Server
You must choose a directory on your system in which all data maintained by the **trains-server** is stored,
create that directory, and set its permissions. The data stored in that directory includes the database, uploaded files and logs.
To restart the **ClearML Server**, you must first stop the containers, and then restart them.
For example, if your data directory is `/opt/trains`, then use the following command:
```bash
docker-compose down
docker-compose -f docker-compose.yml up
```
```bash
sudo mkdir -p /opt/trains/data/elastic && sudo chown -R 1000:1000 /opt/trains
```
## Upgrading <a name="upgrade"></a>
### Launching Docker Containers
**ClearML Server** releases are also reflected in the [docker compose configuration file](https://github.com/allegroai/trains-server/blob/master/docker/docker-compose.yml).
We strongly encourage you to keep your **ClearML Server** up to date, by keeping up with the current release.
Launch the Docker containers. For example, if your data directory is `\opt\trains`,
then use the following commands:
**Note**: The following upgrade instructions use the Linux OS as an example.
```bash
sudo docker run -d --restart="always" --name="trains-elastic" -e "ES_JAVA_OPTS=-Xms2g -Xmx2g" -e "bootstrap.memory_lock=true" -e "cluster.name=trains" -e "discovery.zen.minimum_master_nodes=1" -e "node.name=trains" -e "script.inline=true" -e "script.update=true" -e "thread_pool.bulk.queue_size=2000" -e "thread_pool.search.queue_size=10000" -e "xpack.security.enabled=false" -e "xpack.monitoring.enabled=false" -e "cluster.routing.allocation.node_initial_primaries_recoveries=500" -e "node.ingest=true" -e "http.compression_level=7" -e "reindex.remote.whitelist=*.*" -e "script.painless.regex.enabled=true" --network="host" -v /opt/trains/data/elastic:/usr/share/elasticsearch/data docker.elastic.co/elasticsearch/elasticsearch:5.6.16
```
To upgrade your existing **ClearML Server** deployment:
```bash
sudo docker run -d --restart="always" --name="trains-mongo" -v /opt/trains/data/mongo/db:/data/db -v /opt/trains/data/mongo/configdb:/data/configdb --network="host" mongo:3.6.5
```
1. Shut down the docker containers
```bash
docker-compose down
```
```bash
sudo docker run -d --restart="always" --name="trains-fileserver" --network="host" -v /opt/trains/logs:/var/log/trains -v /opt/trains/data/fileserver:/mnt/fileserver allegroai/trains:latest fileserver
```
1. We highly recommend backing up your data directory before upgrading.
```bash
sudo docker run -d --restart="always" --name="trains-apiserver" --network="host" -v /opt/trains/logs:/var/log/trains allegroai/trains:latest apiserver
```
Assuming your data directory is `/opt/clearml`, to archive all data into `~/clearml_backup.tgz` execute:
```bash
sudo docker run -d --restart="always" --name="trains-webserver" --network="host" -v /opt/trains/logs:/var/log/trains allegroai/trains:latest webserver
```
```bash
sudo tar czvf ~/clearml_backup.tgz /opt/clearml/data
```
After the **trains-server** Dockers are up, the following are available:
<details>
<summary>Restore instructions:</summary>
* API server on port `8008`
* Web server on port `8080`
* File server on port `8081`
To restore this example backup, execute:
```bash
sudo rm -R /opt/clearml/data
sudo tar -xzf ~/clearml_backup.tgz -C /opt/clearml/data
```
</details>
## Upgrade
1. Download the latest `docker-compose.yml` file.
We are constantly updating, improving and adding to the **trains-server**.
New releases will include new pre-built Docker images.
When we release a new version and include a new pre-built Docker image for it, upgrade as follows:
```bash
curl https://raw.githubusercontent.com/allegroai/trains-server/master/docker/docker-compose.yml -o docker-compose.yml
```
1. Shut down and remove each of your Docker instances using the following commands:
1. Configure the ClearML-Agent Services (not supported on Windows installation).
If `TRAINS_HOST_IP` is not provided, ClearML-Agent Services will use the external
public address of the **ClearML Server**. If `TRAINS_AGENT_GIT_USER` / `TRAINS_AGENT_GIT_PASS` are not provided,
the ClearML-Agent Services will not be able to access any private repositories for running service tasks.
```bash
export TRAINS_HOST_IP=server_host_ip_here
export TRAINS_AGENT_GIT_USER=git_username_here
export TRAINS_AGENT_GIT_PASS=git_password_here
```
sudo docker stop <docker-name>
sudo docker rm -v <docker-name>
The Docker names are (see [Launching Docker images](##launching-docker-images)):
* `trains-elastic`
* `trains-mongo`
* `trains-fileserver`
* `trains-apiserver`
* `trains-webserver`
1. Spin up the docker containers, it will automatically pull the latest **ClearML Server** build
```bash
docker-compose -f docker-compose.yml pull
docker-compose -f docker-compose.yml up
```
2. We highly recommend backing up your data directory!. A simple way to do that is using `tar`:
**\* If something went wrong along the way, check our FAQ: [Common Docker Upgrade Errors](https://allegro.ai/clearml/docs/docs/faq/faq.html).**
For example, if your data directory is `/opt/trains`, use the following command:
sudo tar czvf ~/trains_backup.tgz /opt/trains/data
This back ups all data to an archive in your home directory.
To restore this example backup, use the following command:
sudo rm -R /opt/trains/data
sudo tar -xzf ~/trains_backup.tgz -C /opt/trains/data
3. Launch the newly released Docker image (see [Launching Docker images](#Launching-docker-images)).
## Community & Support
If you have any questions, look to the ClearML [FAQ](https://allegro.ai/clearml/docs/docs/faq/faq.html), or
tag your questions on [stackoverflow](https://stackoverflow.com/questions/tagged/trains) with '**trains**' tag.
For feature requests or bug reports, please use [GitHub issues](https://github.com/allegroai/trains-server/issues).
Additionally, you can always find us at *clearml@allegro.ai*
## License
[Server Side Public License v1.0](https://github.com/mongodb/mongo/blob/master/LICENSE-Community.txt)
**trains-server** relies *heavily* on both [MongoDB](https://github.com/mongodb/mongo) and [ElasticSearch](https://github.com/elastic/elasticsearch).
With the recent changes in both MongoDB's and ElasticSearch's OSS license, we feel it is our job as a community to support the projects we love and cherish.
We feel the cause for the license change in both cases is more than just, and chose [SSPL](https://www.mongodb.com/licensing/server-side-public-license) because it is the more general and flexible of the two.
The **ClearML Server** relies on both [MongoDB](https://github.com/mongodb/mongo) and [ElasticSearch](https://github.com/elastic/elasticsearch).
With the recent changes in both MongoDB's and ElasticSearch's OSS license, we feel it is our responsibility as a
member of the community to support the projects we love and cherish.
We believe the cause for the license change in both cases is more than just,
and chose [SSPL](https://www.mongodb.com/licensing/server-side-public-license) because it is the more general and flexible of the two licenses.
This is our way to say - we support you guys!

557
apiserver/LICENSE Normal file
View File

@@ -0,0 +1,557 @@
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the modified version, and the Corresponding Source for all programs that
you use to make the Program or modified version available as a service,
including, without limitation, management software, user interfaces,
application program interfaces, automation software, monitoring software,
backup software, storage software and hosting software, all such that a
user could run an instance of the service using the Service Source Code
you make available.
14. Revised Versions of this License.
MongoDB, Inc. may publish revised and/or new versions of the Server Side
Public License from time to time. Such new versions will be similar in
spirit to the present version, but may differ in detail to address new
problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies that a certain numbered version of the Server Side Public
License “or any later version” applies to it, you have the option of
following the terms and conditions either of that numbered version or of
any later version published by MongoDB, Inc. If the Program does not
specify a version number of the Server Side Public License, you may
choose any version ever published by MongoDB, Inc.
If the Program specifies that a proxy can decide which future versions of
the Server Side Public License can be used, that proxy's public statement
of acceptance of a version permanently authorizes you to choose that
version for the Program.
Later license versions may give you additional or different permissions.
However, no additional obligations are imposed on any author or copyright
holder as a result of your choosing to follow a later version.
15. Disclaimer of Warranty.
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY
OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
16. Limitation of Liability.
IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING
ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF
THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO
LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU
OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
17. Interpretation of Sections 15 and 16.
If the disclaimer of warranty and limitation of liability provided above
cannot be given local legal effect according to their terms, reviewing
courts shall apply local law that most closely approximates an absolute
waiver of all civil liability in connection with the Program, unless a
warranty or assumption of liability accompanies a copy of the Program in
return for a fee.
END OF TERMS AND CONDITIONS

View File

@@ -0,0 +1,6 @@
from .apierror import APIError
from .base import BaseError
from apiserver.apierrors_generator import ErrorsGenerator
ErrorsGenerator.generate_python_files()

View File

@@ -1,9 +1,10 @@
class APIError(Exception):
def __init__(self, msg, code=500, subcode=0, **_):
def __init__(self, msg, code=500, subcode=0, error_data=None, **_):
super(APIError, self).__init__()
self._msg = msg
self._code = code
self._subcode = subcode
self._error_data = error_data or {}
@property
def msg(self):
@@ -17,5 +18,9 @@ class APIError(Exception):
def subcode(self):
return self._subcode
@property
def error_data(self):
return self._error_data
def __str__(self):
return self.msg

View File

@@ -1,9 +1,13 @@
import six
from boltons.typeutils import classproperty
from typing import Tuple
import six
from boltons.iterutils import is_collection, remap
from boltons.typeutils import classproperty
from .apierror import APIError
jsonable_types = (dict, list, tuple, str, int, float, bool, type(None))
class BaseError(APIError):
_default_code = 500
@@ -19,15 +23,26 @@ class BaseError(APIError):
f"{k}={self._format_kwarg(v)}" for k, v in kwargs.items()
)
message += f": {kwargs_msg}"
params = kwargs.copy()
params.update(
code=self._default_code, subcode=self._default_subcode, msg=message
super(BaseError, self).__init__(
code=self._default_code,
subcode=self._default_subcode,
msg=message,
error_data=self._to_safe_json_types(kwargs),
)
super(BaseError, self).__init__(**params)
@staticmethod
def _to_safe_json_types(data):
def visit(_, k, v):
if not isinstance(v, jsonable_types):
v = str(v)
return k, v
return remap(data, visit=visit)
@staticmethod
def _format_kwarg(value):
if isinstance(value, (tuple, list)):
if is_collection(value):
return f'({", ".join(str(v) for v in value)})'
elif isinstance(value, six.string_types):
return value

View File

@@ -0,0 +1,129 @@
400 {
_: "bad_request"
1: ["not_supported", "endpoint is not supported"]
2: ["request_path_has_invalid_version", "request path has invalid version"]
5: ["invalid_headers", "invalid headers"]
6: ["impersonation_error", "impersonation error"]
10: ["invalid_id", "invalid object id"]
11: ["missing_required_fields", "missing required fields"]
12: ["validation_error", "validation error"]
13: ["fields_not_allowed_for_role", "fields not allowed for role"]
14: ["invalid fields", "fields not defined for object"]
15: ["fields_conflict", "conflicting fields"]
16: ["fields_value_error", "invalid value for fields"]
17: ["batch_contains_no_items", "batch request contains no items"]
18: ["batch_validation_error", "batch request validation error"]
19: ["invalid_lucene_syntax", "malformed lucene query"]
20: ["fields_type_error", "invalid type for fields"]
21: ["invalid_regex_error", "malformed regular expression"]
22: ["invalid_email_address", "malformed email address"]
23: ["invalid_domain_name", "malformed domain name"]
24: ["not_public_object", "object is not public"]
# Tasks
100: ["task_error", "general task error"]
101: ["invalid_task_id", "invalid task id"]
102: ["task_validation_error", "task validation error"]
110: ["invalid_task_status", "invalid task status"]
111: ["task_not_started", "task not started (invalid task status)"]
112: ["task_in_progress", "task in progress (invalid task status)"]
113: ["task_published", "task published (invalid task status)"]
114: ["task_status_unknown", "task unknown (invalid task status)"]
120: ["invalid_task_execution_progress", "invalid task execution progress"]
121: ["failed_changing_task_status", "failed changing task status. probably someone changed it before you"]
122: ["missing_task_fields", "task is missing expected fields"]
123: ["task_cannot_be_deleted", "task cannot be deleted"]
125: ["task_has_jobs_running", "task has jobs that haven't completed yet"]
126: ["invalid_task_type", "invalid task type for this operations"]
127: ["invalid_task_input", "invalid task output"]
128: ["invalid_task_output", "invalid task output"]
129: ["task_publish_in_progress", "Task publish in progress"]
130: ["task_not_found", "task not found"]
131: ["events_not_added", "events not added"]
# Models
200: ["model_error", "general task error"]
201: ["invalid_model_id", "invalid model id"]
202: ["model_not_ready", "model is not ready"]
203: ["model_is_ready", "model is ready"]
204: ["invalid_model_uri", "invalid model URI"]
205: ["model_in_use", "model is used by tasks"]
206: ["model_creating_task_exists", "task that created this model exists"]
# Users
300: ["invalid_user", "invalid user"]
301: ["invalid_user_id", "invalid user id"]
302: ["user_id_exists", "user id already exists"]
305: ["invalid_preferences_update", "Malformed key and/or value"]
# Projects
401: ["invalid_project_id", "invalid project id"]
402: ["project_has_tasks", "project has associated tasks"]
403: ["project_not_found", "project not found"]
405: ["project_has_models", "project has associated models"]
# Queues
701: ["invalid_queue_id", "invalid queue id"]
702: ["queue_not_empty", "queue is not empty"]
703: ["invalid_queue_or_task_not_queued", "invalid queue id or task not in queue"]
704: ["removed_during_reposition", "task was removed by another party during reposition"]
705: ["failed_adding_during_reposition", "failed adding task back to queue during reposition"]
706: ["task_already_queued", "failed adding task to queue since task is already queued"]
707: ["no_default_queue", "no queue is tagged as the default queue for this company"]
708: ["multiple_default_queues", "more than one queue is tagged as the default queue for this company"]
# Database
800: ["data_validation_error", "data validation error"]
801: ["expected_unique_data", "value combination already exists"]
# Workers
1001: ["invalid_worker_id", "invalid worker id"]
1002: ["worker_registration_failed", "worker registration failed"]
1003: ["worker_registered", "worker is already registered"]
1004: ["worker_not_registered", "worker is not registered"]
1005: ["worker_stats_not_found", "worker stats not found"]
1104: ["invalid_scroll_id", "Invalid scroll id"]
}
401 {
_: "unauthorized"
1: ["not_authorized", "unauthorized (not authorized for endpoint)"]
2: ["entity_not_allowed", "unauthorized (entity not allowed)"]
10: ["bad_auth_type", "unauthorized (bad authentication header type)"]
20: ["no_credentials", "unauthorized (missing credentials)"]
21: ["bad_credentials", "unauthorized (malformed credentials)"]
22: ["invalid_credentials", "unauthorized (invalid credentials)"]
30: ["invalid_token", "invalid token"]
31: ["blocked_token", "token is blocked"]
40: ["invalid_fixed_user", "fixed user ID was not found"]
}
403: {
_: "forbidden"
10: ["routing_error", "forbidden (routing error)"]
12: ["blocked_internal_endpoint", "forbidden (blocked internal endpoint)"]
20: ["role_not_allowed", "forbidden (not allowed for role)"]
21: ["no_write_permission", "forbidden (modification not allowed)"]
}
500 {
_: "server_error"
0: ["general_error", "general server error"]
1: ["internal_error", "internal server error"]
2: ["config_error", "configuration error"]
3: ["build_info_error", "build info unavailable or corrupted"]
4: ["low_disk_space", "Critical server error! Server reports low or insufficient disk space. Please resolve immediately by allocating additional disk space or freeing up storage space."]
10: ["transaction_error", "a transaction call has returned with an error"]
# Database-related issues
100: ["data_error", "general data error"]
101: ["inconsistent_data", "inconsistent data encountered in document"]
102: ["database_unavailable", "database is temporarily unavailable"]
110: ["update_failed", "update failed"]
# Index-related issues
201: ["missing_index", "missing internal index"]
9999: ["not_implemented", "action is not yet implemented"]
}

View File

@@ -0,0 +1 @@
from .errors_generator import ErrorsGenerator

View File

@@ -0,0 +1,4 @@
from .errors_generator import ErrorsGenerator
if __name__ == '__main__':
ErrorsGenerator.generate_python_files()

View File

@@ -0,0 +1,31 @@
from functools import reduce
from pathlib import Path
from typing import Union
from pyhocon import ConfigFactory, ConfigTree
from .generator import Generator
class ErrorsGenerator:
_apierrors_path = Path(__file__).parents[1] / "apierrors"
_files = [_apierrors_path / "errors.conf"]
@classmethod
def _get_codes(cls):
return {
(k, v.pop("_")): v
for k, v in reduce(
ConfigTree.merge_configs, map(ConfigFactory.parse_file, cls._files),
).items()
}
@classmethod
def add_errors_file(cls, path: Union[Path, str]):
cls._files.append(path)
@classmethod
def generate_python_files(cls):
Generator(cls._apierrors_path / "errors", format_pep8=False).make_errors(
cls._get_codes()
)

View File

@@ -8,9 +8,12 @@ from pathlib import Path
env = jinja2.Environment(
loader=jinja2.FileSystemLoader(str(Path(__file__).parent)),
autoescape=jinja2.select_autoescape(disabled_extensions=('py',), default_for_string=False),
autoescape=jinja2.select_autoescape(
disabled_extensions=("py",), default_for_string=False
),
trim_blocks=True,
lstrip_blocks=True)
lstrip_blocks=True,
)
def env_filter(name=None):
@@ -19,14 +22,14 @@ def env_filter(name=None):
@env_filter()
def cls_name(name):
delims = list(map(re.escape, (' ', '_')))
parts = re.split('|'.join(delims), name)
return ''.join(x.capitalize() for x in parts)
delims = list(map(re.escape, (" ", "_")))
parts = re.split("|".join(delims), name)
return "".join(x.capitalize() for x in parts)
class Generator(object):
_base_class_name = 'BaseError'
_base_class_module = 'apierrors.base'
_base_class_name = "BaseError"
_base_class_module = "apiserver.apierrors.base"
def __init__(self, path, format_pep8=True, use_md5=True):
self._use_md5 = use_md5
@@ -35,29 +38,37 @@ class Generator(object):
self._path.mkdir(parents=True, exist_ok=True)
def _make_init_file(self, path):
(self._path / path / '__init__.py').write_bytes('')
(self._path / path / "__init__.py").write_bytes(b"")
def _do_render(self, file, template, context):
with file.open('w') as f:
with file.open("w") as f:
result = template.render(
base_class_name=self._base_class_name,
base_class_module=self._base_class_module,
**context)
**context
)
if self._format_pep8:
result = autopep8.fix_code(result, options={'aggressive': 1, 'verbose': 0, 'max_line_length': 120})
import autopep8
result = autopep8.fix_code(
result,
options={"aggressive": 1, "verbose": 0, "max_line_length": 120},
)
f.write(result)
def _make_section(self, name, code, subcodes):
self._do_render(
file=(self._path / name).with_suffix('.py'),
template=env.get_template('templates/section.jinja2'),
context=dict(code=code, subcodes=list(subcodes.items()),))
file=(self._path / name).with_suffix(".py"),
template=env.get_template("templates/section.jinja2"),
context=dict(code=code, subcodes=list(subcodes.items()),),
)
def _make_init(self, sections):
self._do_render(
file=(self._path / '__init__.py'),
template=env.get_template('templates/init.jinja2'),
context=dict(sections=sections,))
file=(self._path / "__init__.py"),
template=env.get_template("templates/init.jinja2"),
context=dict(sections=sections,),
)
def _key_to_str(self, data):
if isinstance(data, dict):
@@ -66,11 +77,11 @@ class Generator(object):
def _calc_digest(self, data):
data = json.dumps(self._key_to_str(data), sort_keys=True)
return hashlib.md5(data.encode('utf8')).hexdigest()
return hashlib.md5(data.encode("utf8")).hexdigest()
def make_errors(self, errors):
digest = None
digest_file = self._path / 'digest.md5'
digest_file = self._path / "digest.md5"
if self._use_md5:
digest = self._calc_digest(errors)
if digest_file.is_file():
@@ -79,7 +90,7 @@ class Generator(object):
self._make_init(errors)
for (code, section_name), subcodes in errors.items():
self._make_section(section_name, code, subcodes)
self._make_section(section_name, int(code), subcodes)
if self._use_md5:
digest_file.write_text(digest)

View File

@@ -5,5 +5,5 @@ from {{ base_class_module }} import {{ base_class_name }}
{% for subcode, (name, msg) in subcodes %}
{{ error_class(name|cls_name, msg, code, subcode) -}}
{{ error_class(name|cls_name, msg, code, subcode|int) -}}
{% endfor %}

View File

@@ -0,0 +1,303 @@
from enum import Enum
from typing import Union, Type, Iterable
import jsonmodels.errors
import six
from jsonmodels import fields
from jsonmodels.fields import _LazyType, NotSet
from jsonmodels.models import Base as ModelBase
from jsonmodels.validators import Enum as EnumValidator
from mongoengine.base import BaseDocument
from validators import email as email_validator, domain as domain_validator
from apiserver.apierrors import errors
from apiserver.utilities.json import loads, dumps
class EmailField(fields.StringField):
def validate(self, value):
super().validate(value)
if value is None:
return
if email_validator(value) is not True:
raise errors.bad_request.InvalidEmailAddress()
class DomainField(fields.StringField):
def validate(self, value):
super().validate(value)
if value is None:
return
if domain_validator(value) is not True:
raise errors.bad_request.InvalidDomainName()
def make_default(field_cls, default_value):
class _FieldWithDefault(field_cls):
def get_default_value(self):
return default_value
return _FieldWithDefault
class ListField(fields.ListField):
def __init__(self, items_types=None, *args, default=NotSet, **kwargs):
if default is not NotSet and callable(default):
default = default()
super(ListField, self).__init__(items_types, *args, default=default, **kwargs)
def _cast_value(self, value):
try:
return super(ListField, self)._cast_value(value)
except TypeError:
if len(self.items_types) == 1 and issubclass(self.items_types[0], Enum):
return self.items_types[0](value)
return value
def validate_single_value(self, item):
super(ListField, self).validate_single_value(item)
if isinstance(item, ModelBase):
item.validate()
# since there is no distinction between None and empty DictField
# this value can be used as sentinel in order to distinguish
# between not set and empty DictField
DictFieldNotSet = {}
class DictField(fields.BaseField):
types = (dict,)
def __init__(self, value_types=None, *args, **kwargs):
self.value_types = self._assign_types(value_types)
super(DictField, self).__init__(*args, **kwargs)
def get_default_value(self):
default = super(DictField, self).get_default_value()
if default is None and not self.required:
return {}
return default
@staticmethod
def _assign_types(value_types):
if value_types:
try:
value_types = tuple(value_types)
except TypeError:
value_types = (value_types,)
else:
value_types = tuple()
return tuple(
_LazyType(type_) if isinstance(type_, six.string_types) else type_
for type_ in value_types
)
def parse_value(self, values):
"""Cast value to proper collection."""
result = self.get_default_value()
if values is None:
return result
if not self.value_types or not isinstance(values, dict):
return values
return {key: self._cast_value(value) for key, value in values.items()}
def _cast_value(self, value):
if isinstance(value, self.value_types):
return value
else:
if len(self.value_types) != 1:
tpl = 'Cannot decide which type to choose from "{types}".'
raise jsonmodels.errors.ValidationError(
tpl.format(
types=', '.join([t.__name__ for t in self.value_types])
)
)
return self.value_types[0](**value)
def validate(self, value):
super(DictField, self).validate(value)
if not self.value_types:
return
if not value:
return
for item in value.values():
self.validate_single_value(item)
def validate_single_value(self, item):
if not self.value_types:
return
if not isinstance(item, self.value_types):
raise jsonmodels.errors.ValidationError(
"All items must be instances "
'of "{types}", and not "{type}".'.format(
types=", ".join([t.__name__ for t in self.value_types]),
type=type(item).__name__,
)
)
def _elem_to_struct(self, value):
try:
return value.to_struct()
except AttributeError:
return value
def to_struct(self, values):
return {k: self._elem_to_struct(v) for k, v in values.items()}
class IntField(fields.IntField):
def parse_value(self, value):
try:
return super(IntField, self).parse_value(value)
except (ValueError, TypeError):
return value
class NullableEnumValidator(EnumValidator):
"""Validator for enums that allows a None value."""
def validate(self, value):
if value is not None:
super(NullableEnumValidator, self).validate(value)
class EnumField(fields.StringField):
def __init__(
self,
values_or_type: Union[Iterable, Type[Enum]],
*args,
required=False,
default=None,
**kwargs
):
choices = list(map(self.parse_value, values_or_type))
validator_cls = EnumValidator if required else NullableEnumValidator
kwargs.setdefault("validators", []).append(validator_cls(*choices))
super().__init__(
default=self.parse_value(default), required=required, *args, **kwargs
)
def parse_value(self, value):
if isinstance(value, Enum):
return str(value.value)
return super().parse_value(value)
class ActualEnumField(fields.StringField):
def __init__(
self,
enum_class: Type[Enum],
*args,
validators=None,
required=False,
default=None,
**kwargs
):
self.__enum = enum_class
self.types = (enum_class,)
# noinspection PyTypeChecker
choices = list(enum_class)
validator_cls = EnumValidator if required else NullableEnumValidator
validators = [*(validators or []), validator_cls(*choices)]
super().__init__(
default=self.parse_value(default) if default else NotSet,
*args,
required=required,
validators=validators,
**kwargs
)
def parse_value(self, value):
if value is None and not self.required:
return self.get_default_value()
try:
# noinspection PyArgumentList
return self.__enum(value)
except ValueError:
return value
def to_struct(self, value):
return super().to_struct(value.value)
class JsonSerializableMixin:
def to_json(self: ModelBase):
return dumps(self.to_struct())
@classmethod
def from_json(cls: Type[ModelBase], s):
return cls(**loads(s))
def callable_default(cls: Type[fields.BaseField]) -> Type[fields.BaseField]:
class _Wrapped(cls):
_callable_default = None
def get_default_value(self):
if self._callable_default:
return self._callable_default()
return super(_Wrapped, self).get_default_value()
def __init__(self, *args, default=None, **kwargs):
if default and callable(default):
self._callable_default = default
default = default()
super(_Wrapped, self).__init__(*args, default=default, **kwargs)
return _Wrapped
class MongoengineFieldsDict(DictField):
"""
DictField representing mongoengine field names/value mapping.
Used to convert mongoengine-style field/subfield notation to user-presentable syntax, including handling update
operators.
"""
mongoengine_update_operators = (
"inc",
"dec",
"push",
"push_all",
"pop",
"pull",
"pull_all",
"add_to_set",
)
@staticmethod
def _normalize_mongo_value(value):
if isinstance(value, BaseDocument):
return value.to_mongo()
return value
@classmethod
def _normalize_mongo_field_path(cls, path, value):
parts = path.split("__")
if len(parts) > 1:
if parts[0] == "set":
parts = parts[1:]
elif parts[0] == "unset":
parts = parts[1:]
value = None
elif parts[0] in cls.mongoengine_update_operators:
return None, None
return ".".join(parts), cls._normalize_mongo_value(value)
def parse_value(self, value):
value = super(MongoengineFieldsDict, self).parse_value(value)
return {
k: v
for k, v in (self._normalize_mongo_field_path(*p) for p in value.items())
if k is not None
}

View File

@@ -1,11 +1,11 @@
from jsonmodels.fields import IntField, StringField, BoolField, EmbeddedField
from jsonmodels.fields import IntField, StringField, BoolField, EmbeddedField, DateTimeField
from jsonmodels.models import Base
from jsonmodels.validators import Max, Enum
from apimodels import ListField, EnumField
from config import config
from database.model.auth import Role
from database.utils import get_options
from apiserver.apimodels import ListField, EnumField
from apiserver.config_repo import config
from apiserver.database.model.auth import Role
from apiserver.database.utils import get_options
class GetTokenRequest(Base):
@@ -79,6 +79,7 @@ class Credentials(Base):
class CredentialsResponse(Credentials):
secret_key = StringField()
last_used = DateTimeField(default=None)
class CreateCredentialsResponse(Base):

View File

@@ -0,0 +1,28 @@
from jsonmodels import models, fields
from jsonmodels.validators import Length
from apiserver.apimodels import MongoengineFieldsDict, ListField
class UpdateResponse(models.Base):
updated = fields.IntField(required=True)
fields = MongoengineFieldsDict()
class PagedRequest(models.Base):
page = fields.IntField()
page_size = fields.IntField()
class IdResponse(models.Base):
id = fields.StringField(required=True)
class MakePublicRequest(models.Base):
ids = ListField(items_types=str, validators=[Length(minimum_value=1)])
class MoveRequest(models.Base):
ids = ListField([str], validators=Length(minimum_value=1))
project = fields.StringField()
project_name = fields.StringField()

View File

@@ -0,0 +1,34 @@
import validators
from jsonmodels.errors import ValidationError
class ForEach(object):
def __init__(self, validator):
self.validator = validator
def validate(self, values):
for value in values:
self.validator.validate(value)
def modify_schema(self, field_schema):
return self.validator.modify_schema(field_schema)
class Hostname(object):
def validate(self, value):
if validators.domain(value) is not True:
raise ValidationError(f"Value '{value}' is not a valid hostname")
def modify_schema(self, field_schema):
field_schema["format"] = "hostname"
class Email(object):
def validate(self, value):
if validators.email(value) is not True:
raise ValidationError(f"Value '{value}' is not a valid email address")
def modify_schema(self, field_schema):
field_schema["format"] = "email"

View File

@@ -0,0 +1,105 @@
from enum import auto
from typing import Sequence, Optional
from jsonmodels import validators
from jsonmodels.fields import StringField, BoolField
from jsonmodels.models import Base
from jsonmodels.validators import Length, Min, Max
from apiserver.apimodels import ListField, IntField, ActualEnumField
from apiserver.bll.event.event_common import EventType
from apiserver.bll.event.scalar_key import ScalarKeyEnum
from apiserver.config_repo import config
from apiserver.utilities.stringenum import StringEnum
class HistogramRequestBase(Base):
samples: int = IntField(default=6000, validators=[Min(1), Max(6000)])
key: ScalarKeyEnum = ActualEnumField(ScalarKeyEnum, default=ScalarKeyEnum.iter)
class ScalarMetricsIterHistogramRequest(HistogramRequestBase):
task: str = StringField(required=True)
class MultiTaskScalarMetricsIterHistogramRequest(HistogramRequestBase):
tasks: Sequence[str] = ListField(
items_types=str,
validators=[
Length(
minimum_value=1,
maximum_value=config.get(
"services.tasks.multi_task_histogram_limit", 10
),
)
],
)
class TaskMetric(Base):
task: str = StringField(required=True)
metric: str = StringField(required=True)
class DebugImagesRequest(Base):
metrics: Sequence[TaskMetric] = ListField(
items_types=TaskMetric, validators=[Length(minimum_value=1)]
)
iters: int = IntField(default=1, validators=validators.Min(1))
navigate_earlier: bool = BoolField(default=True)
refresh: bool = BoolField(default=False)
scroll_id: str = StringField()
class TaskMetricVariant(Base):
task: str = StringField(required=True)
metric: str = StringField(required=True)
variant: str = StringField(required=True)
class GetDebugImageSampleRequest(TaskMetricVariant):
iteration: Optional[int] = IntField()
scroll_id: Optional[str] = StringField()
refresh: bool = BoolField(default=False)
class NextDebugImageSampleRequest(Base):
task: str = StringField(required=True)
scroll_id: Optional[str] = StringField()
navigate_earlier: bool = BoolField(default=True)
class LogOrderEnum(StringEnum):
asc = auto()
desc = auto()
class LogEventsRequest(Base):
task: str = StringField(required=True)
batch_size: int = IntField(default=500)
navigate_earlier: bool = BoolField(default=True)
from_timestamp: Optional[int] = IntField()
order: Optional[str] = ActualEnumField(LogOrderEnum)
class IterationEvents(Base):
iter: int = IntField()
events: Sequence[dict] = ListField(items_types=dict)
class MetricEvents(Base):
task: str = StringField()
metric: str = StringField()
iterations: Sequence[IterationEvents] = ListField(items_types=IterationEvents)
class DebugImageResponse(Base):
metrics: Sequence[MetricEvents] = ListField(items_types=MetricEvents)
scroll_id: str = StringField()
class TaskMetricsRequest(Base):
tasks: Sequence[str] = ListField(
items_types=str, validators=[Length(minimum_value=1)]
)
event_type: EventType = ActualEnumField(EventType, required=True)

View File

@@ -0,0 +1,33 @@
from jsonmodels.fields import StringField, BoolField, EmbeddedField, ListField
from jsonmodels.models import Base
from apiserver.apimodels import DictField, callable_default
class GetSupportedModesRequest(Base):
state = StringField(help_text="ASCII base64 encoded application state")
callback_url_prefix = StringField()
class BasicGuestMode(Base):
enabled = BoolField(default=False)
name = StringField()
username = StringField()
password = StringField()
class BasicMode(Base):
enabled = BoolField(default=False)
guest = callable_default(EmbeddedField)(BasicGuestMode, default=BasicGuestMode)
class ServerErrors(Base):
missed_es_upgrade = BoolField(default=False)
es_connection_error = BoolField(default=False)
class GetSupportedModesResponse(Base):
basic = EmbeddedField(BasicMode)
server_errors = EmbeddedField(ServerErrors)
sso = DictField([str, type(None)])
sso_providers = ListField([dict])

View File

@@ -1,16 +1,21 @@
from jsonmodels import models, fields
from six import string_types
from apimodels import ListField, DictField
from apimodels.base import UpdateResponse
from apimodels.tasks import PublishResponse as TaskPublishResponse
from apiserver.apimodels import ListField, DictField
from apiserver.apimodels.base import UpdateResponse
from apiserver.apimodels.tasks import PublishResponse as TaskPublishResponse
class GetFrameworksRequest(models.Base):
projects = fields.ListField(items_types=[str])
class CreateModelRequest(models.Base):
name = fields.StringField(required=True)
uri = fields.StringField(required=True)
labels = DictField(value_types=string_types+(int,), required=True)
labels = DictField(value_types=string_types+(int,))
tags = ListField(items_types=string_types)
system_tags = ListField(items_types=string_types)
comment = fields.StringField()
public = fields.BoolField(default=False)
project = fields.StringField()

View File

@@ -0,0 +1,11 @@
from jsonmodels import fields, models
class Filter(models.Base):
tags = fields.ListField([str])
system_tags = fields.ListField([str])
class TagsRequest(models.Base):
include_system = fields.BoolField(default=False)
filter = fields.EmbeddedField(Filter)

View File

@@ -0,0 +1,24 @@
from jsonmodels import models, fields
from apiserver.apimodels import ListField, ActualEnumField
from apiserver.apimodels.organization import TagsRequest
from apiserver.database.model import EntityVisibility
class ProjectReq(models.Base):
project = fields.StringField()
class GetHyperParamReq(ProjectReq):
page = fields.IntField(default=0)
page_size = fields.IntField(default=500)
class ProjectTagsRequest(TagsRequest):
projects = ListField(str)
class ProjectTaskParentsRequest(ProjectReq):
projects = ListField(str)
tasks_state = ActualEnumField(EntityVisibility)

View File

@@ -0,0 +1,60 @@
from jsonmodels import validators
from jsonmodels.fields import StringField, IntField, BoolField, FloatField
from jsonmodels.models import Base
from apiserver.apimodels import ListField
class GetDefaultResp(Base):
id = StringField(required=True)
name = StringField(required=True)
class CreateRequest(Base):
name = StringField(required=True)
tags = ListField(items_types=[str])
system_tags = ListField(items_types=[str])
class QueueRequest(Base):
queue = StringField(required=True)
class DeleteRequest(QueueRequest):
force = BoolField(default=False)
class UpdateRequest(QueueRequest):
name = StringField()
tags = ListField(items_types=[str])
system_tags = ListField(items_types=[str])
class TaskRequest(QueueRequest):
task = StringField(required=True)
class MoveTaskRequest(TaskRequest):
count = IntField(default=1)
class MoveTaskResponse(Base):
position = IntField()
class GetMetricsRequest(Base):
queue_ids = ListField([str])
from_date = FloatField(required=True, validators=validators.Min(0))
to_date = FloatField(required=True, validators=validators.Min(0))
interval = IntField(required=True, validators=validators.Min(1))
class QueueMetrics(Base):
queue = StringField()
dates = ListField(int)
avg_waiting_times = ListField([float, int])
queue_lengths = ListField(int)
class GetMetricsResponse(Base):
queues = ListField(QueueMetrics)

View File

@@ -0,0 +1,15 @@
from jsonmodels.fields import BoolField, DateTimeField, StringField
from jsonmodels.models import Base
class ReportStatsOptionRequest(Base):
enabled = BoolField(default=None, nullable=True)
class ReportStatsOptionResponse(Base):
supported = BoolField(default=True)
enabled = BoolField()
enabled_time = DateTimeField(nullable=True)
enabled_version = StringField(nullable=True)
enabled_user = StringField(nullable=True)
current_version = StringField()

View File

@@ -0,0 +1,221 @@
from typing import Sequence
import six
from jsonmodels import models
from jsonmodels.fields import StringField, BoolField, IntField, EmbeddedField
from jsonmodels.validators import Enum, Length
from apiserver.apimodels import DictField, ListField
from apiserver.apimodels.base import UpdateResponse
from apiserver.database.model.task.task import (
TaskType,
ArtifactModes,
DEFAULT_ARTIFACT_MODE,
)
from apiserver.database.utils import get_options
class ArtifactTypeData(models.Base):
preview = StringField()
content_type = StringField()
data_hash = StringField()
class Artifact(models.Base):
key = StringField(required=True)
type = StringField(required=True)
mode = StringField(
validators=Enum(*get_options(ArtifactModes)), default=DEFAULT_ARTIFACT_MODE
)
uri = StringField()
hash = StringField()
content_size = IntField()
timestamp = IntField()
type_data = EmbeddedField(ArtifactTypeData)
display_data = ListField([list])
class StartedResponse(UpdateResponse):
started = IntField()
class EnqueueResponse(UpdateResponse):
queued = IntField()
class DequeueResponse(UpdateResponse):
dequeued = IntField()
class ResetResponse(UpdateResponse):
deleted_indices = ListField(items_types=six.string_types)
dequeued = DictField()
frames = DictField()
events = DictField()
model_deleted = IntField()
class TaskRequest(models.Base):
task = StringField(required=True)
class UpdateRequest(TaskRequest):
status_reason = StringField(default="")
status_message = StringField(default="")
force = BoolField(default=False)
class EnqueueRequest(UpdateRequest):
queue = StringField()
class DeleteRequest(UpdateRequest):
move_to_trash = BoolField(default=True)
class SetRequirementsRequest(TaskRequest):
requirements = DictField(required=True)
class PublishRequest(UpdateRequest):
publish_model = BoolField(default=True)
class PublishResponse(UpdateResponse):
pass
class TaskData(models.Base):
"""
This is a partial description of task can be updated incrementally
"""
class CreateRequest(TaskData):
name = StringField(required=True)
type = StringField(required=True, validators=Enum(*get_options(TaskType)))
class PingRequest(TaskRequest):
pass
class GetTypesRequest(models.Base):
projects = ListField(items_types=[str])
class CloneRequest(TaskRequest):
new_task_name = StringField()
new_task_comment = StringField()
new_task_tags = ListField([str])
new_task_system_tags = ListField([str])
new_task_parent = StringField()
new_task_project = StringField()
new_task_hyperparams = DictField()
new_task_configuration = DictField()
execution_overrides = DictField()
validate_references = BoolField(default=False)
new_project_name = StringField()
class AddOrUpdateArtifactsRequest(TaskRequest):
artifacts = ListField([Artifact], validators=Length(minimum_value=1))
force = BoolField(default=False)
class ArtifactId(models.Base):
key = StringField(required=True)
mode = StringField(
validators=Enum(*get_options(ArtifactModes)), default=DEFAULT_ARTIFACT_MODE
)
class DeleteArtifactsRequest(TaskRequest):
artifacts = ListField([ArtifactId], validators=Length(minimum_value=1))
force = BoolField(default=False)
class ResetRequest(UpdateRequest):
clear_all = BoolField(default=False)
class MultiTaskRequest(models.Base):
tasks = ListField([str], validators=Length(minimum_value=1))
class GetHyperParamsRequest(MultiTaskRequest):
pass
class HyperParamItem(models.Base):
section = StringField(required=True, validators=Length(minimum_value=1))
name = StringField(required=True, validators=Length(minimum_value=1))
value = StringField(required=True)
type = StringField()
description = StringField()
class ReplaceHyperparams(object):
none = "none"
section = "section"
all = "all"
class EditHyperParamsRequest(TaskRequest):
hyperparams: Sequence[HyperParamItem] = ListField(
[HyperParamItem], validators=Length(minimum_value=1)
)
replace_hyperparams = StringField(
validators=Enum(*get_options(ReplaceHyperparams)),
default=ReplaceHyperparams.none,
)
force = BoolField(default=False)
class HyperParamKey(models.Base):
section = StringField(required=True, validators=Length(minimum_value=1))
name = StringField(nullable=True)
class DeleteHyperParamsRequest(TaskRequest):
hyperparams: Sequence[HyperParamKey] = ListField(
[HyperParamKey], validators=Length(minimum_value=1)
)
force = BoolField(default=False)
class GetConfigurationsRequest(MultiTaskRequest):
names = ListField([str])
class GetConfigurationNamesRequest(MultiTaskRequest):
pass
class Configuration(models.Base):
name = StringField(required=True, validators=Length(minimum_value=1))
value = StringField(required=True)
type = StringField()
description = StringField()
class EditConfigurationRequest(TaskRequest):
configuration: Sequence[Configuration] = ListField(
[Configuration], validators=Length(minimum_value=1)
)
replace_configuration = BoolField(default=False)
force = BoolField(default=False)
class DeleteConfigurationRequest(TaskRequest):
configuration: Sequence[str] = ListField([str], validators=Length(minimum_value=1))
force = BoolField(default=False)
class ArchiveRequest(MultiTaskRequest):
status_reason = StringField(default="")
status_message = StringField(default="")
class ArchiveResponse(models.Base):
archived = IntField()

View File

@@ -1,7 +1,7 @@
from jsonmodels.fields import StringField
from jsonmodels.models import Base
from apimodels import DictField
from apiserver.apimodels import DictField
class CreateRequest(Base):

View File

@@ -0,0 +1,178 @@
from enum import Enum
import six
from jsonmodels import validators
from jsonmodels.fields import (
StringField,
EmbeddedField,
DateTimeField,
IntField,
FloatField,
BoolField,
)
from jsonmodels.models import Base
from apiserver.apimodels import make_default, ListField, EnumField, JsonSerializableMixin
DEFAULT_TIMEOUT = 10 * 60
class WorkerRequest(Base):
worker = StringField(required=True)
tags = ListField(str)
class RegisterRequest(WorkerRequest):
timeout = make_default(
IntField, DEFAULT_TIMEOUT
)() # registration timeout in seconds (default is 10min)
queues = ListField(six.string_types) # list of queues this worker listens to
class MachineStats(Base):
cpu_usage = ListField(six.integer_types + (float,))
cpu_temperature = ListField(six.integer_types + (float,))
gpu_usage = ListField(six.integer_types + (float,))
gpu_temperature = ListField(six.integer_types + (float,))
gpu_memory_free = ListField(six.integer_types + (float,))
gpu_memory_used = ListField(six.integer_types + (float,))
memory_used = FloatField()
memory_free = FloatField()
network_tx = FloatField()
network_rx = FloatField()
disk_free_home = FloatField()
disk_free_temp = FloatField()
disk_read = FloatField()
disk_write = FloatField()
class StatusReportRequest(WorkerRequest):
task = StringField() # task the worker is running on
queue = StringField() # queue from which task was taken
queues = ListField(
str
) # list of queues this worker listens to. if None, this will not update the worker's queues list.
timestamp = IntField(required=True)
machine_stats = EmbeddedField(MachineStats)
class IdNameEntry(Base):
id = StringField(required=True)
name = StringField()
class WorkerEntry(Base, JsonSerializableMixin):
key = StringField() # not required due to migration issues
id = StringField(required=True)
user = EmbeddedField(IdNameEntry)
company = EmbeddedField(IdNameEntry)
ip = StringField()
task = EmbeddedField(IdNameEntry)
project = EmbeddedField(IdNameEntry)
queue = StringField() # queue from which current task was taken
queues = ListField(str) # list of queues this worker listens to
register_time = DateTimeField(required=True)
register_timeout = IntField(required=True)
last_activity_time = DateTimeField(required=True)
last_report_time = DateTimeField()
tags = ListField(str)
class CurrentTaskEntry(IdNameEntry):
running_time = IntField()
last_iteration = IntField()
class QueueEntry(IdNameEntry):
next_task = EmbeddedField(IdNameEntry)
num_tasks = IntField()
class WorkerResponseEntry(WorkerEntry):
task = EmbeddedField(CurrentTaskEntry)
queue = EmbeddedField(QueueEntry)
queues = ListField(QueueEntry)
class GetAllRequest(Base):
last_seen = IntField(default=3600)
class GetAllResponse(Base):
workers = ListField(WorkerResponseEntry)
class StatsBase(Base):
worker_ids = ListField(str)
class StatsReportBase(StatsBase):
from_date = FloatField(required=True, validators=validators.Min(0))
to_date = FloatField(required=True, validators=validators.Min(0))
interval = IntField(required=True, validators=validators.Min(1))
class AggregationType(Enum):
avg = "avg"
min = "min"
max = "max"
class StatItem(Base):
key = StringField(required=True)
aggregation = EnumField(AggregationType, default=AggregationType.avg)
class GetStatsRequest(StatsReportBase):
items = ListField(
StatItem, required=True, validators=validators.Length(minimum_value=1)
)
split_by_variant = BoolField(default=False)
class AggregationStats(Base):
aggregation = EnumField(AggregationType)
values = ListField(float)
class MetricStats(Base):
metric = StringField()
variant = StringField()
dates = ListField(int)
stats = ListField(AggregationStats)
class WorkerStatistics(Base):
worker = StringField()
metrics = ListField(MetricStats)
class GetStatsResponse(Base):
workers = ListField(WorkerStatistics)
class GetMetricKeysRequest(StatsBase):
pass
class MetricCategory(Base):
name = StringField()
metric_keys = ListField(str)
class GetMetricKeysResponse(Base):
categories = ListField(MetricCategory)
class GetActivityReportRequest(StatsReportBase):
pass
class ActivityReportSeries(Base):
dates = ListField(int)
counts = ListField(int)
class GetActivityReportResponse(Base):
total = EmbeddedField(ActivityReportSeries)
active = EmbeddedField(ActivityReportSeries)

View File

@@ -1,25 +1,17 @@
from datetime import datetime
import database
from apierrors import errors
from apimodels.auth import (
GetTokenResponse,
CreateUserRequest,
Credentials as CredModel,
)
from apimodels.users import CreateRequest as Users_CreateRequest
from bll.user import UserBLL
from config import config
from database.errors import translate_errors_context
from database.model.auth import User, Role, Credentials
from database.model.company import Company
from service_repo import APICall
from service_repo.auth import (
Identity,
Token,
get_client_id,
get_secret_key,
)
from apiserver import database
from apiserver.apierrors import errors
from apiserver.apimodels.auth import GetTokenResponse, CreateUserRequest, Credentials as CredModel
from apiserver.apimodels.users import CreateRequest as Users_CreateRequest
from apiserver.bll.user import UserBLL
from apiserver.config_repo import config
from apiserver.config.info import get_version, get_build_number
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.auth import User, Role, Credentials
from apiserver.database.model.company import Company
from apiserver.service_repo import APICall, ServiceRepo
from apiserver.service_repo.auth import Identity, Token, get_client_id, get_secret_key
log = config.logger("AuthBLL")
@@ -62,6 +54,9 @@ class AuthBLL:
identity=identity,
entities=entities,
expiration_sec=expiration_sec,
api_version=str(ServiceRepo.max_endpoint_version()),
server_version=str(get_version()),
server_build=str(get_build_number()),
)
return GetTokenResponse(token=token.decode("ascii"))

View File

@@ -0,0 +1,476 @@
from collections import defaultdict
from concurrent.futures.thread import ThreadPoolExecutor
from functools import partial
from itertools import chain
from operator import attrgetter, itemgetter
from typing import Sequence, Tuple, Optional, Mapping
import attr
import dpath
from boltons.iterutils import bucketize
from elasticsearch import Elasticsearch
from jsonmodels.fields import StringField, ListField, IntField
from jsonmodels.models import Base
from redis import StrictRedis
from apiserver.apierrors import errors
from apiserver.apimodels import JsonSerializableMixin
from apiserver.bll.event.event_common import (
EventSettings,
check_empty_data,
search_company_events,
EventType,
)
from apiserver.bll.redis_cache_manager import RedisCacheManager
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.task.metrics import MetricEventStats
from apiserver.database.model.task.task import Task
from apiserver.timing_context import TimingContext
class VariantScrollState(Base):
name: str = StringField(required=True)
recycle_url_marker: str = StringField()
last_invalid_iteration: int = IntField()
class MetricScrollState(Base):
task: str = StringField(required=True)
name: str = StringField(required=True)
last_min_iter: Optional[int] = IntField()
last_max_iter: Optional[int] = IntField()
timestamp: int = IntField(default=0)
variants: Sequence[VariantScrollState] = ListField([VariantScrollState])
def reset(self):
"""Reset the scrolling state for the metric"""
self.last_min_iter = self.last_max_iter = None
class DebugImageEventsScrollState(Base, JsonSerializableMixin):
id: str = StringField(required=True)
metrics: Sequence[MetricScrollState] = ListField([MetricScrollState])
warning: str = StringField()
@attr.s(auto_attribs=True)
class DebugImagesResult(object):
metric_events: Sequence[tuple] = []
next_scroll_id: str = None
class DebugImagesIterator:
EVENT_TYPE = EventType.metrics_image
def __init__(self, redis: StrictRedis, es: Elasticsearch):
self.es = es
self.cache_manager = RedisCacheManager(
state_class=DebugImageEventsScrollState,
redis=redis,
expiration_interval=EventSettings.state_expiration_sec,
)
def get_task_events(
self,
company_id: str,
metrics: Sequence[Tuple[str, str]],
iter_count: int,
navigate_earlier: bool = True,
refresh: bool = False,
state_id: str = None,
) -> DebugImagesResult:
if check_empty_data(self.es, company_id, self.EVENT_TYPE):
return DebugImagesResult()
def init_state(state_: DebugImageEventsScrollState):
unique_metrics = set(metrics)
state_.metrics = self._init_metric_states(company_id, list(unique_metrics))
def validate_state(state_: DebugImageEventsScrollState):
"""
Validate that the metrics stored in the state are the same
as requested in the current call.
Refresh the state if requested
"""
state_metrics = set((m.task, m.name) for m in state_.metrics)
if state_metrics != set(metrics):
raise errors.bad_request.InvalidScrollId(
"Task metrics stored in the state do not match the passed ones",
scroll_id=state_.id,
)
if refresh:
self._reinit_outdated_metric_states(company_id, state_)
for metric_state in state_.metrics:
metric_state.reset()
with self.cache_manager.get_or_create_state(
state_id=state_id, init_state=init_state, validate_state=validate_state
) as state:
res = DebugImagesResult(next_scroll_id=state.id)
with ThreadPoolExecutor(EventSettings.max_workers) as pool:
res.metric_events = list(
pool.map(
partial(
self._get_task_metric_events,
company_id=company_id,
iter_count=iter_count,
navigate_earlier=navigate_earlier,
),
state.metrics,
)
)
return res
def _reinit_outdated_metric_states(
self, company_id, state: DebugImageEventsScrollState
):
"""
Determines the metrics for which new debug image events were added
since their states were initialized and reinits these states
"""
task_ids = set(metric.task for metric in state.metrics)
tasks = Task.objects(id__in=list(task_ids), company=company_id).only(
"id", "metric_stats"
)
def get_last_update_times_for_task_metrics(task: Task) -> Sequence[Tuple]:
"""For metrics that reported debug image events get tuples of task_id/metric_name and last update times"""
metric_stats: Mapping[str, MetricEventStats] = task.metric_stats
if not metric_stats:
return []
return [
(
(task.id, stats.metric),
stats.event_stats_by_type[self.EVENT_TYPE.value].last_update,
)
for stats in metric_stats.values()
if self.EVENT_TYPE.value in stats.event_stats_by_type
]
update_times = dict(
chain.from_iterable(
get_last_update_times_for_task_metrics(task) for task in tasks
)
)
outdated_metrics = [
metric
for metric in state.metrics
if (metric.task, metric.name) in update_times
and update_times[metric.task, metric.name] > metric.timestamp
]
state.metrics = [
*(metric for metric in state.metrics if metric not in outdated_metrics),
*(
self._init_metric_states(
company_id,
[(metric.task, metric.name) for metric in outdated_metrics],
)
),
]
def _init_metric_states(
self, company_id: str, metrics: Sequence[Tuple[str, str]]
) -> Sequence[MetricScrollState]:
"""
Returned initialized metric scroll stated for the requested task metrics
"""
tasks = defaultdict(list)
for (task, metric) in metrics:
tasks[task].append(metric)
with ThreadPoolExecutor(EventSettings.max_workers) as pool:
return list(
chain.from_iterable(
pool.map(
partial(
self._init_metric_states_for_task, company_id=company_id
),
tasks.items(),
)
)
)
def _init_metric_states_for_task(
self, task_metrics: Tuple[str, Sequence[str]], company_id: str
) -> Sequence[MetricScrollState]:
"""
Return metric scroll states for the task filled with the variant states
for the variants that reported any debug images
"""
task, metrics = task_metrics
es_req: dict = {
"size": 0,
"query": {
"bool": {
"must": [
{"term": {"task": task}},
{"terms": {"metric": metrics}},
{"exists": {"field": "url"}},
]
}
},
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"last_event_timestamp": {"max": {"field": "timestamp"}},
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"urls": {
"terms": {
"field": "url",
"order": {"max_iter": "desc"},
"size": 1, # we need only one url from the most recent iteration
},
"aggs": {
"max_iter": {"max": {"field": "iter"}},
"iters": {
"top_hits": {
"sort": {"iter": {"order": "desc"}},
"size": 2, # need two last iterations so that we can take
# the second one as invalid
"_source": "iter",
}
},
},
}
},
},
},
}
},
}
with translate_errors_context(), TimingContext("es", "_init_metric_states"):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=self.EVENT_TYPE,
body=es_req,
)
if "aggregations" not in es_res:
return []
def init_variant_scroll_state(variant: dict):
"""
Return new variant scroll state for the passed variant bucket
If the image urls get recycled then fill the last_invalid_iteration field
"""
state = VariantScrollState(name=variant["key"])
top_iter_url = dpath.get(variant, "urls/buckets")[0]
iters = dpath.get(top_iter_url, "iters/hits/hits")
if len(iters) > 1:
state.last_invalid_iteration = dpath.get(iters[1], "_source/iter")
return state
return [
MetricScrollState(
task=task,
name=metric["key"],
variants=[
init_variant_scroll_state(variant)
for variant in dpath.get(metric, "variants/buckets")
],
timestamp=dpath.get(metric, "last_event_timestamp/value"),
)
for metric in dpath.get(es_res, "aggregations/metrics/buckets")
]
def _get_task_metric_events(
self,
metric: MetricScrollState,
company_id: str,
iter_count: int,
navigate_earlier: bool,
) -> Tuple:
"""
Return task metric events grouped by iterations
Update metric scroll state
"""
if metric.last_max_iter is None:
# the first fetch is always from the latest iteration to the earlier ones
navigate_earlier = True
must_conditions = [
{"term": {"task": metric.task}},
{"term": {"metric": metric.name}},
{"exists": {"field": "url"}},
]
must_not_conditions = []
range_condition = None
if navigate_earlier and metric.last_min_iter is not None:
range_condition = {"lt": metric.last_min_iter}
elif not navigate_earlier and metric.last_max_iter is not None:
range_condition = {"gt": metric.last_max_iter}
if range_condition:
must_conditions.append({"range": {"iter": range_condition}})
if navigate_earlier:
"""
When navigating to earlier iterations consider only
variants whose invalid iterations border is lower than
our starting iteration. For these variants make sure
that only events from the valid iterations are returned
"""
if not metric.last_min_iter:
variants = metric.variants
else:
variants = list(
v
for v in metric.variants
if v.last_invalid_iteration is None
or v.last_invalid_iteration < metric.last_min_iter
)
if not variants:
return metric.task, metric.name, []
must_conditions.append(
{"terms": {"variant": list(v.name for v in variants)}}
)
else:
"""
When navigating to later iterations all variants may be relevant.
For the variants whose invalid border is higher than our starting
iteration make sure that only events from valid iterations are returned
"""
variants = list(
v
for v in metric.variants
if v.last_invalid_iteration is not None
and v.last_invalid_iteration > metric.last_max_iter
)
variants_conditions = [
{
"bool": {
"must": [
{"term": {"variant": v.name}},
{"range": {"iter": {"lte": v.last_invalid_iteration}}},
]
}
}
for v in variants
if v.last_invalid_iteration is not None
]
if variants_conditions:
must_not_conditions.append({"bool": {"should": variants_conditions}})
es_req = {
"size": 0,
"query": {
"bool": {"must": must_conditions, "must_not": must_not_conditions}
},
"aggs": {
"iters": {
"terms": {
"field": "iter",
"size": iter_count,
"order": {"_key": "desc" if navigate_earlier else "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"events": {
"top_hits": {"sort": {"url": {"order": "desc"}}}
}
},
}
},
}
},
}
with translate_errors_context(), TimingContext("es", "get_debug_image_events"):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=self.EVENT_TYPE,
body=es_req,
)
if "aggregations" not in es_res:
return metric.task, metric.name, []
def get_iteration_events(variant_buckets: Sequence[dict]) -> Sequence:
return [
ev["_source"]
for v in variant_buckets
for ev in dpath.get(v, "events/hits/hits")
]
iterations = [
{
"iter": it["key"],
"events": get_iteration_events(dpath.get(it, "variants/buckets")),
}
for it in dpath.get(es_res, "aggregations/iters/buckets")
]
if not navigate_earlier:
iterations.sort(key=itemgetter("iter"), reverse=True)
if iterations:
metric.last_max_iter = iterations[0]["iter"]
metric.last_min_iter = iterations[-1]["iter"]
# Commented for now since the last invalid iteration is calculated in the beginning
# if navigate_earlier and any(
# variant.last_invalid_iteration is None for variant in variants
# ):
# """
# Variants validation flags due to recycling can
# be set only on navigation to earlier frames
# """
# iterations = self._update_variants_invalid_iterations(variants, iterations)
return metric.task, metric.name, iterations
@staticmethod
def _update_variants_invalid_iterations(
variants: Sequence[VariantScrollState], iterations: Sequence[dict]
) -> Sequence[dict]:
"""
This code is currently not in used since the invalid iterations
are calculated during MetricState initialization
For variants that do not have recycle url marker set it from the
first event
For variants that do not have last_invalid_iteration set check if the
recycle marker was reached on a certain iteration and set it to the
corresponding iteration
For variants that have a newly set last_invalid_iteration remove
events from the invalid iterations
Return the updated iterations list
"""
variants_lookup = bucketize(variants, attrgetter("name"))
for it in iterations:
iteration = it["iter"]
events_to_remove = []
for event in it["events"]:
variant = variants_lookup[event["variant"]][0]
if (
variant.last_invalid_iteration
and variant.last_invalid_iteration >= iteration
):
events_to_remove.append(event)
continue
event_url = event.get("url")
if not variant.recycle_url_marker:
variant.recycle_url_marker = event_url
elif variant.recycle_url_marker == event_url:
variant.last_invalid_iteration = iteration
events_to_remove.append(event)
if events_to_remove:
it["events"] = [ev for ev in it["events"] if ev not in events_to_remove]
return [it for it in iterations if it["events"]]

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import operator
from typing import Sequence, Tuple, Optional
import attr
from boltons.iterutils import first
from elasticsearch import Elasticsearch
from jsonmodels.fields import StringField, ListField, IntField, BoolField
from jsonmodels.models import Base
from redis import StrictRedis
from apiserver.apierrors import errors
from apiserver.apimodels import JsonSerializableMixin
from apiserver.bll.event.event_common import (
EventSettings,
EventType,
check_empty_data,
search_company_events,
)
from apiserver.bll.redis_cache_manager import RedisCacheManager
from apiserver.database.errors import translate_errors_context
from apiserver.timing_context import TimingContext
from apiserver.utilities.dicts import nested_get
class VariantState(Base):
name: str = StringField(required=True)
min_iteration: int = IntField()
max_iteration: int = IntField()
class DebugSampleHistoryState(Base, JsonSerializableMixin):
id: str = StringField(required=True)
iteration: int = IntField()
variant: str = StringField()
task: str = StringField()
metric: str = StringField()
reached_first: bool = BoolField()
reached_last: bool = BoolField()
variant_states: Sequence[VariantState] = ListField([VariantState])
warning: str = StringField()
@attr.s(auto_attribs=True)
class DebugSampleHistoryResult(object):
scroll_id: str = None
event: dict = None
min_iteration: int = None
max_iteration: int = None
class DebugSampleHistory:
EVENT_TYPE = EventType.metrics_image
def __init__(self, redis: StrictRedis, es: Elasticsearch):
self.es = es
self.cache_manager = RedisCacheManager(
state_class=DebugSampleHistoryState,
redis=redis,
expiration_interval=EventSettings.state_expiration_sec,
)
def get_next_debug_image(
self, company_id: str, task: str, state_id: str, navigate_earlier: bool
) -> DebugSampleHistoryResult:
"""
Get the debug image for next/prev variant on the current iteration
If does not exist then try getting image for the first/last variant from next/prev iteration
"""
res = DebugSampleHistoryResult(scroll_id=state_id)
state = self.cache_manager.get_state(state_id)
if not state or state.task != task:
raise errors.bad_request.InvalidScrollId(scroll_id=state_id)
if check_empty_data(self.es, company_id=company_id, event_type=self.EVENT_TYPE):
return res
image = self._get_next_for_current_iteration(
company_id=company_id, navigate_earlier=navigate_earlier, state=state
) or self._get_next_for_another_iteration(
company_id=company_id, navigate_earlier=navigate_earlier, state=state
)
if not image:
return res
self._fill_res_and_update_state(image=image, res=res, state=state)
self.cache_manager.set_state(state=state)
return res
def _fill_res_and_update_state(
self, image: dict, res: DebugSampleHistoryResult, state: DebugSampleHistoryState
):
state.variant = image["variant"]
state.iteration = image["iter"]
res.event = image
var_state = first(s for s in state.variant_states if s.name == state.variant)
if var_state:
res.min_iteration = var_state.min_iteration
res.max_iteration = var_state.max_iteration
def _get_next_for_current_iteration(
self, company_id: str, navigate_earlier: bool, state: DebugSampleHistoryState
) -> Optional[dict]:
"""
Get the image for next (if navigated earlier is False) or previous variant sorted by name for the same iteration
Only variants for which the iteration falls into their valid range are considered
Return None if no such variant or image is found
"""
cmp = operator.lt if navigate_earlier else operator.gt
variants = [
var_state
for var_state in state.variant_states
if cmp(var_state.name, state.variant)
and var_state.min_iteration <= state.iteration
]
if not variants:
return
must_conditions = [
{"term": {"task": state.task}},
{"term": {"metric": state.metric}},
{"terms": {"variant": [v.name for v in variants]}},
{"term": {"iter": state.iteration}},
{"exists": {"field": "url"}},
]
es_req = {
"size": 1,
"sort": {"variant": "desc" if navigate_earlier else "asc"},
"query": {"bool": {"must": must_conditions}},
}
with translate_errors_context(), TimingContext(
"es", "get_next_for_current_iteration"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=self.EVENT_TYPE, body=es_req
)
hits = nested_get(es_res, ("hits", "hits"))
if not hits:
return
return hits[0]["_source"]
def _get_next_for_another_iteration(
self, company_id: str, navigate_earlier: bool, state: DebugSampleHistoryState
) -> Optional[dict]:
"""
Get the image for the first variant for the next iteration (if navigate_earlier is set to False)
or from the last variant for the previous iteration (otherwise)
The variants for which the image falls in invalid range are discarded
If no suitable image is found then None is returned
"""
must_conditions = [
{"term": {"task": state.task}},
{"term": {"metric": state.metric}},
{"exists": {"field": "url"}},
]
if navigate_earlier:
range_operator = "lt"
order = "desc"
variants = [
var_state
for var_state in state.variant_states
if var_state.min_iteration < state.iteration
]
else:
range_operator = "gt"
order = "asc"
variants = state.variant_states
if not variants:
return
variants_conditions = [
{
"bool": {
"must": [
{"term": {"variant": v.name}},
{"range": {"iter": {"gte": v.min_iteration}}},
]
}
}
for v in variants
]
must_conditions.append({"bool": {"should": variants_conditions}})
must_conditions.append({"range": {"iter": {range_operator: state.iteration}}},)
es_req = {
"size": 1,
"sort": [{"iter": order}, {"variant": order}],
"query": {"bool": {"must": must_conditions}},
}
with translate_errors_context(), TimingContext(
"es", "get_next_for_another_iteration"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=self.EVENT_TYPE, body=es_req
)
hits = nested_get(es_res, ("hits", "hits"))
if not hits:
return
return hits[0]["_source"]
def get_debug_image_for_variant(
self,
company_id: str,
task: str,
metric: str,
variant: str,
iteration: Optional[int] = None,
refresh: bool = False,
state_id: str = None,
) -> DebugSampleHistoryResult:
"""
Get the debug image for the requested iteration or the latest before it
If the iteration is not passed then get the latest event
"""
res = DebugSampleHistoryResult()
if check_empty_data(self.es, company_id=company_id, event_type=self.EVENT_TYPE):
return res
def init_state(state_: DebugSampleHistoryState):
state_.task = task
state_.metric = metric
self._reset_variant_states(company_id=company_id, state=state_)
def validate_state(state_: DebugSampleHistoryState):
if state_.task != task or state_.metric != metric:
raise errors.bad_request.InvalidScrollId(
"Task and metric stored in the state do not match the passed ones",
scroll_id=state_.id,
)
if refresh:
self._reset_variant_states(company_id=company_id, state=state_)
state: DebugSampleHistoryState
with self.cache_manager.get_or_create_state(
state_id=state_id, init_state=init_state, validate_state=validate_state,
) as state:
res.scroll_id = state.id
var_state = first(s for s in state.variant_states if s.name == variant)
if not var_state:
return res
res.min_iteration = var_state.min_iteration
res.max_iteration = var_state.max_iteration
must_conditions = [
{"term": {"task": task}},
{"term": {"metric": metric}},
{"term": {"variant": variant}},
{"exists": {"field": "url"}},
]
if iteration is not None:
must_conditions.append(
{
"range": {
"iter": {"lte": iteration, "gte": var_state.min_iteration}
}
}
)
else:
must_conditions.append(
{"range": {"iter": {"gte": var_state.min_iteration}}}
)
es_req = {
"size": 1,
"sort": {"iter": "desc"},
"query": {"bool": {"must": must_conditions}},
}
with translate_errors_context(), TimingContext(
"es", "get_debug_image_for_variant"
):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=self.EVENT_TYPE,
body=es_req,
)
hits = nested_get(es_res, ("hits", "hits"))
if not hits:
return res
self._fill_res_and_update_state(
image=hits[0]["_source"], res=res, state=state
)
return res
def _reset_variant_states(self, company_id: str, state: DebugSampleHistoryState):
variant_iterations = self._get_variant_iterations(
company_id=company_id, task=state.task, metric=state.metric
)
state.variant_states = [
VariantState(name=var_name, min_iteration=min_iter, max_iteration=max_iter)
for var_name, min_iter, max_iter in variant_iterations
]
def _get_variant_iterations(
self,
company_id: str,
task: str,
metric: str,
variants: Optional[Sequence[str]] = None,
) -> Sequence[Tuple[str, int, int]]:
"""
Return valid min and max iterations that the task reported images
The min iteration is the lowest iteration that contains non-recycled image url
"""
must = [
{"term": {"task": task}},
{"term": {"metric": metric}},
{"exists": {"field": "url"}},
]
if variants:
must.append({"terms": {"variant": variants}})
es_req: dict = {
"size": 0,
"query": {"bool": {"must": must}},
"aggs": {
"variants": {
# all variants that sent debug images
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"last_iter": {"max": {"field": "iter"}},
"urls": {
# group by urls and choose the minimal iteration
# from all the maximal iterations per url
"terms": {
"field": "url",
"order": {"max_iter": "asc"},
"size": 1,
},
"aggs": {
# find max iteration for each url
"max_iter": {"max": {"field": "iter"}}
},
},
},
}
},
}
with translate_errors_context(), TimingContext(
"es", "get_debug_image_iterations"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=self.EVENT_TYPE, body=es_req
)
def get_variant_data(variant_bucket: dict) -> Tuple[str, int, int]:
variant = variant_bucket["key"]
urls = nested_get(variant_bucket, ("urls", "buckets"))
min_iter = int(urls[0]["max_iter"]["value"])
max_iter = int(variant_bucket["last_iter"]["value"])
return variant, min_iter, max_iter
return [
get_variant_data(variant_bucket)
for variant_bucket in nested_get(
es_res, ("aggregations", "variants", "buckets")
)
]

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@@ -0,0 +1,894 @@
import base64
import hashlib
import zlib
from collections import defaultdict
from contextlib import closing
from datetime import datetime
from operator import attrgetter
from typing import Sequence, Set, Tuple, Optional, Dict
import six
from elasticsearch import helpers
from mongoengine import Q
from nested_dict import nested_dict
from apiserver.bll.event.debug_sample_history import DebugSampleHistory
from apiserver.bll.event.event_common import (
EventType,
EventSettings,
get_index_name,
check_empty_data,
search_company_events,
delete_company_events,
)
from apiserver.bll.util import parallel_chunked_decorator
from apiserver.database import utils as dbutils
from apiserver.es_factory import es_factory
from apiserver.apierrors import errors
from apiserver.bll.event.debug_images_iterator import DebugImagesIterator
from apiserver.bll.event.event_metrics import EventMetrics
from apiserver.bll.event.log_events_iterator import LogEventsIterator, TaskEventsResult
from apiserver.bll.task import TaskBLL
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.task.task import Task, TaskStatus
from apiserver.redis_manager import redman
from apiserver.timing_context import TimingContext
from apiserver.tools import safe_get
from apiserver.utilities.dicts import flatten_nested_items
# noinspection PyTypeChecker
from apiserver.utilities.json import loads
EVENT_TYPES = set(map(attrgetter("value"), EventType))
LOCKED_TASK_STATUSES = (TaskStatus.publishing, TaskStatus.published)
class PlotFields:
valid_plot = "valid_plot"
plot_len = "plot_len"
plot_str = "plot_str"
plot_data = "plot_data"
class EventBLL(object):
id_fields = ("task", "iter", "metric", "variant", "key")
empty_scroll = "FFFF"
def __init__(self, events_es=None, redis=None):
self.es = events_es or es_factory.connect("events")
self._metrics = EventMetrics(self.es)
self._skip_iteration_for_metric = set(
config.get("services.events.ignore_iteration.metrics", [])
)
self.redis = redis or redman.connection("apiserver")
self.debug_images_iterator = DebugImagesIterator(es=self.es, redis=self.redis)
self.debug_sample_history = DebugSampleHistory(es=self.es, redis=self.redis)
self.log_events_iterator = LogEventsIterator(es=self.es)
@property
def metrics(self) -> EventMetrics:
return self._metrics
@staticmethod
def _get_valid_tasks(company_id, task_ids: Set, allow_locked_tasks=False) -> Set:
"""Verify that task exists and can be updated"""
if not task_ids:
return set()
with translate_errors_context(), TimingContext("mongo", "task_by_ids"):
query = Q(id__in=task_ids, company=company_id)
if not allow_locked_tasks:
query &= Q(status__nin=LOCKED_TASK_STATUSES)
res = Task.objects(query).only("id")
return {r.id for r in res}
def add_events(
self, company_id, events, worker, allow_locked_tasks=False
) -> Tuple[int, int, dict]:
actions = []
task_ids = set()
task_iteration = defaultdict(lambda: 0)
task_last_scalar_events = nested_dict(
3, dict
) # task_id -> metric_hash -> variant_hash -> MetricEvent
task_last_events = nested_dict(
3, dict
) # task_id -> metric_hash -> event_type -> MetricEvent
errors_per_type = defaultdict(int)
valid_tasks = self._get_valid_tasks(
company_id,
task_ids={
event["task"] for event in events if event.get("task") is not None
},
allow_locked_tasks=allow_locked_tasks,
)
for event in events:
# remove spaces from event type
event_type = event.get("type")
if event_type is None:
errors_per_type["Event must have a 'type' field"] += 1
continue
event_type = event_type.replace(" ", "_")
if event_type not in EVENT_TYPES:
errors_per_type[f"Invalid event type {event_type}"] += 1
continue
task_id = event.get("task")
if task_id is None:
errors_per_type["Event must have a 'task' field"] += 1
continue
if task_id not in valid_tasks:
errors_per_type["Invalid task id"] += 1
continue
event["type"] = event_type
# @timestamp indicates the time the event is written, not when it happened
event["@timestamp"] = es_factory.get_es_timestamp_str()
# for backward bomba-tavili-tea
if "ts" in event:
event["timestamp"] = event.pop("ts")
# set timestamp and worker if not sent
if "timestamp" not in event:
event["timestamp"] = es_factory.get_timestamp_millis()
if "worker" not in event:
event["worker"] = worker
# force iter to be a long int
iter = event.get("iter")
if iter is not None:
iter = int(iter)
event["iter"] = iter
# used to have "values" to indicate array. no need anymore
if "values" in event:
event["value"] = event["values"]
del event["values"]
event["metric"] = event.get("metric") or ""
event["variant"] = event.get("variant") or ""
index_name = get_index_name(company_id, event_type)
es_action = {
"_op_type": "index", # overwrite if exists with same ID
"_index": index_name,
"_source": event,
}
# for "log" events, don't assing custom _id - whatever is sent, is written (not overwritten)
if event_type != EventType.task_log.value:
es_action["_id"] = self._get_event_id(event)
else:
es_action["_id"] = dbutils.id()
task_ids.add(task_id)
if (
iter is not None
and event.get("metric") not in self._skip_iteration_for_metric
):
task_iteration[task_id] = max(iter, task_iteration[task_id])
self._update_last_metric_events_for_task(
last_events=task_last_events[task_id], event=event,
)
if event_type == EventType.metrics_scalar.value:
self._update_last_scalar_events_for_task(
last_events=task_last_scalar_events[task_id], event=event
)
actions.append(es_action)
action: Dict[dict]
plot_actions = [
action["_source"]
for action in actions
if action["_source"]["type"] == EventType.metrics_plot.value
]
if plot_actions:
self.validate_and_compress_plots(
plot_actions,
validate_json=config.get("services.events.validate_plot_str", False),
compression_threshold=config.get(
"services.events.plot_compression_threshold", 100_000
),
)
added = 0
if actions:
chunk_size = 500
with translate_errors_context(), TimingContext("es", "events_add_batch"):
# TODO: replace it with helpers.parallel_bulk in the future once the parallel pool leak is fixed
with closing(
helpers.streaming_bulk(
self.es,
actions,
chunk_size=chunk_size,
# thread_count=8,
refresh=True,
)
) as it:
for success, info in it:
if success:
added += 1
else:
errors_per_type["Error when indexing events batch"] += 1
remaining_tasks = set()
now = datetime.utcnow()
for task_id in task_ids:
# Update related tasks. For reasons of performance, we prefer to update
# all of them and not only those who's events were successful
updated = self._update_task(
company_id=company_id,
task_id=task_id,
now=now,
iter_max=task_iteration.get(task_id),
last_scalar_events=task_last_scalar_events.get(task_id),
last_events=task_last_events.get(task_id),
)
if not updated:
remaining_tasks.add(task_id)
continue
if remaining_tasks:
TaskBLL.set_last_update(
remaining_tasks, company_id, last_update=now
)
if not added:
raise errors.bad_request.EventsNotAdded(**errors_per_type)
errors_count = sum(errors_per_type.values())
return added, errors_count, errors_per_type
@parallel_chunked_decorator(chunk_size=10)
def validate_and_compress_plots(
self,
plot_events: Sequence[dict],
validate_json: bool,
compression_threshold: int,
):
for event in plot_events:
validate = validate_json and not event.pop("skip_validation", False)
plot_str = event.get(PlotFields.plot_str)
if not plot_str:
event[PlotFields.plot_len] = 0
if validate:
event[PlotFields.valid_plot] = False
continue
plot_len = len(plot_str)
event[PlotFields.plot_len] = plot_len
if validate:
event[PlotFields.valid_plot] = self._is_valid_json(plot_str)
if compression_threshold and plot_len >= compression_threshold:
event[PlotFields.plot_data] = base64.encodebytes(
zlib.compress(plot_str.encode(), level=1)
).decode("ascii")
event.pop(PlotFields.plot_str, None)
@parallel_chunked_decorator(chunk_size=10)
def uncompress_plots(self, plot_events: Sequence[dict]):
for event in plot_events:
plot_data = event.pop(PlotFields.plot_data, None)
if plot_data and event.get(PlotFields.plot_str) is None:
event[PlotFields.plot_str] = zlib.decompress(
base64.b64decode(plot_data)
).decode()
@staticmethod
def _is_valid_json(text: str) -> bool:
"""Check str for valid json"""
if not text:
return False
try:
loads(text)
except Exception:
return False
return True
def _update_last_scalar_events_for_task(self, last_events, event):
"""
Update last_events structure with the provided event details if this event is more
recent than the currently stored event for its metric/variant combination.
last_events contains [hashed_metric_name -> hashed_variant_name -> event]. Keys are hashed to avoid mongodb
key conflicts due to invalid characters and/or long field names.
"""
metric = event.get("metric")
variant = event.get("variant")
if not (metric and variant):
return
metric_hash = dbutils.hash_field_name(metric)
variant_hash = dbutils.hash_field_name(variant)
last_event = last_events[metric_hash][variant_hash]
event_iter = event.get("iter", 0)
event_timestamp = event.get("timestamp", 0)
value = event.get("value")
if value is not None and (
(event_iter, event_timestamp)
>= (
last_event.get("iter", event_iter),
last_event.get("timestamp", event_timestamp),
)
):
event_data = {
k: event[k]
for k in ("value", "metric", "variant", "iter", "timestamp")
if k in event
}
event_data["min_value"] = min(value, last_event.get("min_value", value))
event_data["max_value"] = max(value, last_event.get("max_value", value))
last_events[metric_hash][variant_hash] = event_data
def _update_last_metric_events_for_task(self, last_events, event):
"""
Update last_events structure with the provided event details if this event is more
recent than the currently stored event for its metric/event_type combination.
last_events contains [metric_name -> event_type -> event]
"""
metric = event.get("metric")
event_type = event.get("type")
if not (metric and event_type):
return
timestamp = last_events[metric][event_type].get("timestamp", None)
if timestamp is None or timestamp < event["timestamp"]:
last_events[metric][event_type] = event
def _update_task(
self,
company_id,
task_id,
now,
iter_max=None,
last_scalar_events=None,
last_events=None,
):
"""
Update task information in DB with aggregated results after handling event(s) related to this task.
This updates the task with the highest iteration value encountered during the last events update, as well
as the latest metric/variant scalar values reported (according to the report timestamp) and the task's last
update time.
"""
fields = {}
if iter_max is not None:
fields["last_iteration_max"] = iter_max
if last_scalar_events:
fields["last_scalar_values"] = list(
flatten_nested_items(
last_scalar_events,
nesting=2,
include_leaves=[
"value",
"min_value",
"max_value",
"metric",
"variant",
],
)
)
if last_events:
fields["last_events"] = last_events
if not fields:
return False
return TaskBLL.update_statistics(task_id, company_id, last_update=now, **fields)
def _get_event_id(self, event):
id_values = (str(event[field]) for field in self.id_fields if field in event)
return hashlib.md5("-".join(id_values).encode()).hexdigest()
def scroll_task_events(
self,
company_id: str,
task_id: str,
order: str,
event_type: EventType,
batch_size=10000,
scroll_id=None,
):
if scroll_id == self.empty_scroll:
return [], scroll_id, 0
if scroll_id:
with translate_errors_context(), TimingContext("es", "task_log_events"):
es_res = self.es.scroll(scroll_id=scroll_id, scroll="1h")
else:
size = min(batch_size, 10000)
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return [], None, 0
es_req = {
"size": size,
"sort": {"timestamp": {"order": order}},
"query": {"bool": {"must": [{"term": {"task": task_id}}]}},
}
with translate_errors_context(), TimingContext("es", "scroll_task_events"):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=event_type,
body=es_req,
scroll="1h",
)
events, total_events, next_scroll_id = self._get_events_from_es_res(es_res)
return events, next_scroll_id, total_events
def get_last_iterations_per_event_metric_variant(
self,
company_id: str,
task_id: str,
num_last_iterations: int,
event_type: EventType,
):
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return []
es_req: dict = {
"size": 0,
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"iters": {
"terms": {
"field": "iter",
"size": num_last_iterations,
"order": {"_key": "desc"},
}
}
},
}
},
}
},
"query": {"bool": {"must": [{"term": {"task": task_id}}]}},
}
with translate_errors_context(), TimingContext(
"es", "task_last_iter_metric_variant"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
if "aggregations" not in es_res:
return []
return [
(metric["key"], variant["key"], iter["key"])
for metric in es_res["aggregations"]["metrics"]["buckets"]
for variant in metric["variants"]["buckets"]
for iter in variant["iters"]["buckets"]
]
def get_task_plots(
self,
company_id: str,
tasks: Sequence[str],
last_iterations_per_plot: int = None,
sort=None,
size: int = 500,
scroll_id: str = None,
):
if scroll_id == self.empty_scroll:
return [], scroll_id, 0
if scroll_id:
with translate_errors_context(), TimingContext("es", "get_task_events"):
es_res = self.es.scroll(scroll_id=scroll_id, scroll="1h")
else:
event_type = EventType.metrics_plot
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return TaskEventsResult()
plot_valid_condition = {
"bool": {
"should": [
{"term": {PlotFields.valid_plot: True}},
{
"bool": {
"must_not": {"exists": {"field": PlotFields.valid_plot}}
}
},
]
}
}
must = [plot_valid_condition]
if last_iterations_per_plot is None:
must.append({"terms": {"task": tasks}})
else:
should = []
for i, task_id in enumerate(tasks):
last_iters = self.get_last_iterations_per_event_metric_variant(
company_id=company_id,
task_id=task_id,
num_last_iterations=last_iterations_per_plot,
event_type=event_type,
)
if not last_iters:
continue
for metric, variant, iter in last_iters:
should.append(
{
"bool": {
"must": [
{"term": {"task": task_id}},
{"term": {"metric": metric}},
{"term": {"variant": variant}},
{"term": {"iter": iter}},
]
}
}
)
if not should:
return TaskEventsResult()
must.append({"bool": {"should": should}})
if sort is None:
sort = [{"timestamp": {"order": "asc"}}]
es_req = {
"sort": sort,
"size": min(size, 10000),
"query": {"bool": {"must": must}},
}
with translate_errors_context(), TimingContext("es", "get_task_plots"):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=event_type,
body=es_req,
ignore=404,
scroll="1h",
)
events, total_events, next_scroll_id = self._get_events_from_es_res(es_res)
self.uncompress_plots(events)
return TaskEventsResult(
events=events, next_scroll_id=next_scroll_id, total_events=total_events
)
def _get_events_from_es_res(self, es_res: dict) -> Tuple[list, int, Optional[str]]:
"""
Return events and next scroll id from the scrolled query
Release the scroll once it is exhausted
"""
total_events = safe_get(es_res, "hits/total/value", default=0)
events = [doc["_source"] for doc in safe_get(es_res, "hits/hits", default=[])]
next_scroll_id = es_res.get("_scroll_id")
if next_scroll_id and not events:
self.es.clear_scroll(scroll_id=next_scroll_id)
next_scroll_id = self.empty_scroll
return events, total_events, next_scroll_id
def get_task_events(
self,
company_id: str,
task_id: str,
event_type: EventType,
metric=None,
variant=None,
last_iter_count=None,
sort=None,
size=500,
scroll_id=None,
):
if scroll_id == self.empty_scroll:
return [], scroll_id, 0
if scroll_id:
with translate_errors_context(), TimingContext("es", "get_task_events"):
es_res = self.es.scroll(scroll_id=scroll_id, scroll="1h")
else:
task_ids = [task_id] if isinstance(task_id, six.string_types) else task_id
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return TaskEventsResult()
must = []
if metric:
must.append({"term": {"metric": metric}})
if variant:
must.append({"term": {"variant": variant}})
if last_iter_count is None:
must.append({"terms": {"task": task_ids}})
else:
should = []
for i, task_id in enumerate(task_ids):
last_iters = self.get_last_iters(
company_id=company_id,
event_type=event_type,
task_id=task_id,
iters=last_iter_count,
)
if not last_iters:
continue
should.append(
{
"bool": {
"must": [
{"term": {"task": task_id}},
{"terms": {"iter": last_iters}},
]
}
}
)
if not should:
return TaskEventsResult()
must.append({"bool": {"should": should}})
if sort is None:
sort = [{"timestamp": {"order": "asc"}}]
es_req = {
"sort": sort,
"size": min(size, 10000),
"query": {"bool": {"must": must}},
}
with translate_errors_context(), TimingContext("es", "get_task_events"):
es_res = search_company_events(
self.es,
company_id=company_id,
event_type=event_type,
body=es_req,
ignore=404,
scroll="1h",
)
events, total_events, next_scroll_id = self._get_events_from_es_res(es_res)
return TaskEventsResult(
events=events, next_scroll_id=next_scroll_id, total_events=total_events
)
def get_metrics_and_variants(
self, company_id: str, task_id: str, event_type: EventType
):
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return {}
es_req = {
"size": 0,
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
}
}
},
}
},
"query": {"bool": {"must": [{"term": {"task": task_id}}]}},
}
with translate_errors_context(), TimingContext(
"es", "events_get_metrics_and_variants"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
metrics = {}
for metric_bucket in es_res["aggregations"]["metrics"].get("buckets"):
metric = metric_bucket["key"]
metrics[metric] = [
b["key"] for b in metric_bucket["variants"].get("buckets")
]
return metrics
def get_task_latest_scalar_values(self, company_id: str, task_id: str):
event_type = EventType.metrics_scalar
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return {}
es_req = {
"size": 0,
"query": {
"bool": {
"must": [
{"query_string": {"query": "value:>0"}},
{"term": {"task": task_id}},
]
}
},
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"last_value": {
"top_hits": {
"docvalue_fields": ["value"],
"_source": "value",
"size": 1,
"sort": [{"iter": {"order": "desc"}}],
}
},
"last_timestamp": {"max": {"field": "@timestamp"}},
"last_10_value": {
"top_hits": {
"docvalue_fields": ["value"],
"_source": "value",
"size": 10,
"sort": [{"iter": {"order": "desc"}}],
}
},
},
}
},
}
},
"_source": {"excludes": []},
}
with translate_errors_context(), TimingContext(
"es", "events_get_metrics_and_variants"
):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
metrics = []
max_timestamp = 0
for metric_bucket in es_res["aggregations"]["metrics"].get("buckets"):
metric_summary = dict(name=metric_bucket["key"], variants=[])
for variant_bucket in metric_bucket["variants"].get("buckets"):
variant_name = variant_bucket["key"]
last_value = variant_bucket["last_value"]["hits"]["hits"][0]["fields"][
"value"
][0]
last_10_value = variant_bucket["last_10_value"]["hits"]["hits"][0][
"fields"
]["value"][0]
timestamp = variant_bucket["last_timestamp"]["value"]
max_timestamp = max(timestamp, max_timestamp)
metric_summary["variants"].append(
dict(
name=variant_name,
last_value=last_value,
last_10_value=last_10_value,
)
)
metrics.append(metric_summary)
return metrics, max_timestamp
def get_vector_metrics_per_iter(self, company_id, task_id, metric, variant):
event_type = EventType.metrics_vector
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return [], []
es_req = {
"size": 10000,
"query": {
"bool": {
"must": [
{"term": {"task": task_id}},
{"term": {"metric": metric}},
{"term": {"variant": variant}},
]
}
},
"_source": ["iter", "value"],
"sort": ["iter"],
}
with translate_errors_context(), TimingContext("es", "task_stats_vector"):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
vectors = []
iterations = []
for hit in es_res["hits"]["hits"]:
vectors.append(hit["_source"]["value"])
iterations.append(hit["_source"]["iter"])
return iterations, vectors
def get_last_iters(
self, company_id: str, event_type: EventType, task_id: str, iters: int
):
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return []
es_req: dict = {
"size": 0,
"aggs": {
"iters": {
"terms": {
"field": "iter",
"size": iters,
"order": {"_key": "desc"},
}
}
},
"query": {"bool": {"must": [{"term": {"task": task_id}}]}},
}
with translate_errors_context(), TimingContext("es", "task_last_iter"):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
if "aggregations" not in es_res:
return []
return [b["key"] for b in es_res["aggregations"]["iters"]["buckets"]]
def delete_task_events(self, company_id, task_id, allow_locked=False):
with translate_errors_context():
extra_msg = None
query = Q(id=task_id, company=company_id)
if not allow_locked:
query &= Q(status__nin=LOCKED_TASK_STATUSES)
extra_msg = "or task published"
res = Task.objects(query).only("id").first()
if not res:
raise errors.bad_request.InvalidTaskId(
extra_msg, company=company_id, id=task_id
)
es_req = {"query": {"term": {"task": task_id}}}
with translate_errors_context(), TimingContext("es", "delete_task_events"):
es_res = delete_company_events(
es=self.es,
company_id=company_id,
event_type=EventType.all,
body=es_req,
refresh=True,
)
return es_res.get("deleted", 0)

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@@ -0,0 +1,66 @@
from enum import Enum
from typing import Union, Sequence
from boltons.typeutils import classproperty
from elasticsearch import Elasticsearch
from apiserver.config_repo import config
class EventType(Enum):
metrics_scalar = "training_stats_scalar"
metrics_vector = "training_stats_vector"
metrics_image = "training_debug_image"
metrics_plot = "plot"
task_log = "log"
all = "*"
class EventSettings:
@classproperty
def max_workers(self):
return config.get("services.events.events_retrieval.max_metrics_concurrency", 4)
@classproperty
def state_expiration_sec(self):
return config.get(
f"services.events.events_retrieval.state_expiration_sec", 3600
)
@classproperty
def max_metrics_count(self):
return config.get("services.events.events_retrieval.max_metrics_count", 100)
@classproperty
def max_variants_count(self):
return config.get("services.events.events_retrieval.max_variants_count", 100)
def get_index_name(company_id: str, event_type: str):
event_type = event_type.lower().replace(" ", "_")
return f"events-{event_type}-{company_id}"
def check_empty_data(es: Elasticsearch, company_id: str, event_type: EventType) -> bool:
es_index = get_index_name(company_id, event_type.value)
if not es.indices.exists(es_index):
return True
return False
def search_company_events(
es: Elasticsearch,
company_id: Union[str, Sequence[str]],
event_type: EventType,
body: dict,
**kwargs,
) -> dict:
es_index = get_index_name(company_id, event_type.value)
return es.search(index=es_index, body=body, **kwargs)
def delete_company_events(
es: Elasticsearch, company_id: str, event_type: EventType, body: dict, **kwargs
) -> dict:
es_index = get_index_name(company_id, event_type.value)
return es.delete_by_query(index=es_index, body=body, **kwargs)

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@@ -0,0 +1,429 @@
import itertools
import math
from collections import defaultdict
from concurrent.futures.thread import ThreadPoolExecutor
from functools import partial
from operator import itemgetter
from typing import Sequence, Tuple
from elasticsearch import Elasticsearch
from mongoengine import Q
from apiserver.apierrors import errors
from apiserver.bll.event.event_common import (
EventType,
EventSettings,
search_company_events,
check_empty_data,
)
from apiserver.bll.event.scalar_key import ScalarKey, ScalarKeyEnum
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.task.task import Task
from apiserver.timing_context import TimingContext
from apiserver.tools import safe_get
log = config.logger(__file__)
class EventMetrics:
MAX_AGGS_ELEMENTS_COUNT = 50
MAX_SAMPLE_BUCKETS = 6000
def __init__(self, es: Elasticsearch):
self.es = es
def get_scalar_metrics_average_per_iter(
self, company_id: str, task_id: str, samples: int, key: ScalarKeyEnum
) -> dict:
"""
Get scalar metric histogram per metric and variant
The amount of points in each histogram should not exceed
the requested samples
"""
event_type = EventType.metrics_scalar
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return {}
return self._get_scalar_average_per_iter_core(
task_id, company_id, event_type, samples, ScalarKey.resolve(key)
)
def _get_scalar_average_per_iter_core(
self,
task_id: str,
company_id: str,
event_type: EventType,
samples: int,
key: ScalarKey,
run_parallel: bool = True,
) -> dict:
intervals = self._get_task_metric_intervals(
company_id=company_id,
event_type=event_type,
task_id=task_id,
samples=samples,
field=key.field,
)
if not intervals:
return {}
interval_groups = self._group_task_metric_intervals(intervals)
get_scalar_average = partial(
self._get_scalar_average,
task_id=task_id,
company_id=company_id,
event_type=event_type,
key=key,
)
if run_parallel:
with ThreadPoolExecutor(max_workers=EventSettings.max_workers) as pool:
metrics = itertools.chain.from_iterable(
pool.map(get_scalar_average, interval_groups)
)
else:
metrics = itertools.chain.from_iterable(
get_scalar_average(group) for group in interval_groups
)
ret = defaultdict(dict)
for metric_key, metric_values in metrics:
ret[metric_key].update(metric_values)
return ret
def compare_scalar_metrics_average_per_iter(
self,
company_id,
task_ids: Sequence[str],
samples,
key: ScalarKeyEnum,
allow_public=True,
):
"""
Compare scalar metrics for different tasks per metric and variant
The amount of points in each histogram should not exceed the requested samples
"""
task_name_by_id = {}
with translate_errors_context():
task_objs = Task.get_many(
company=company_id,
query=Q(id__in=task_ids),
allow_public=allow_public,
override_projection=("id", "name", "company", "company_origin"),
return_dicts=False,
)
if len(task_objs) < len(task_ids):
invalid = tuple(set(task_ids) - set(r.id for r in task_objs))
raise errors.bad_request.InvalidTaskId(company=company_id, ids=invalid)
task_name_by_id = {t.id: t.name for t in task_objs}
companies = {t.get_index_company() for t in task_objs}
if len(companies) > 1:
raise errors.bad_request.InvalidTaskId(
"only tasks from the same company are supported"
)
event_type = EventType.metrics_scalar
company_id = next(iter(companies))
if check_empty_data(self.es, company_id=company_id, event_type=event_type):
return {}
get_scalar_average_per_iter = partial(
self._get_scalar_average_per_iter_core,
company_id=company_id,
event_type=event_type,
samples=samples,
key=ScalarKey.resolve(key),
run_parallel=False,
)
with ThreadPoolExecutor(max_workers=EventSettings.max_workers) as pool:
task_metrics = zip(
task_ids, pool.map(get_scalar_average_per_iter, task_ids)
)
res = defaultdict(lambda: defaultdict(dict))
for task_id, task_data in task_metrics:
task_name = task_name_by_id[task_id]
for metric_key, metric_data in task_data.items():
for variant_key, variant_data in metric_data.items():
variant_data["name"] = task_name
res[metric_key][variant_key][task_id] = variant_data
return res
MetricInterval = Tuple[str, str, int, int]
MetricIntervalGroup = Tuple[int, Sequence[Tuple[str, str]]]
@classmethod
def _group_task_metric_intervals(
cls, intervals: Sequence[MetricInterval]
) -> Sequence[MetricIntervalGroup]:
"""
Group task metric intervals so that the following conditions are meat:
- All the metrics in the same group have the same interval (with 10% rounding)
- The amount of metrics in the group does not exceed MAX_AGGS_ELEMENTS_COUNT
- The total count of samples in the group does not exceed MAX_SAMPLE_BUCKETS
"""
metric_interval_groups = []
interval_group = []
group_interval_upper_bound = 0
group_max_interval = 0
group_samples = 0
for metric, variant, interval, size in sorted(intervals, key=itemgetter(2)):
if (
interval > group_interval_upper_bound
or (group_samples + size) > cls.MAX_SAMPLE_BUCKETS
or len(interval_group) >= cls.MAX_AGGS_ELEMENTS_COUNT
):
if interval_group:
metric_interval_groups.append((group_max_interval, interval_group))
interval_group = []
group_max_interval = interval
group_interval_upper_bound = interval + int(interval * 0.1)
group_samples = 0
interval_group.append((metric, variant))
group_samples += size
group_max_interval = max(group_max_interval, interval)
if interval_group:
metric_interval_groups.append((group_max_interval, interval_group))
return metric_interval_groups
def _get_task_metric_intervals(
self,
company_id: str,
event_type: EventType,
task_id: str,
samples: int,
field: str = "iter",
) -> Sequence[MetricInterval]:
"""
Calculate interval per task metric variant so that the resulting
amount of points does not exceed sample.
Return the list og metric variant intervals as the following tuple:
(metric, variant, interval, samples)
"""
es_req = {
"size": 0,
"query": {"term": {"task": task_id}},
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": {
"count": {"value_count": {"field": field}},
"min_index": {"min": {"field": field}},
"max_index": {"max": {"field": field}},
},
}
},
}
},
}
with translate_errors_context(), TimingContext("es", "task_stats_get_interval"):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req,
)
aggs_result = es_res.get("aggregations")
if not aggs_result:
return []
return [
self._build_metric_interval(metric["key"], variant["key"], variant, samples)
for metric in aggs_result["metrics"]["buckets"]
for variant in metric["variants"]["buckets"]
]
@staticmethod
def _build_metric_interval(
metric: str, variant: str, data: dict, samples: int
) -> Tuple[str, str, int, int]:
"""
Calculate index interval per metric_variant variant so that the
total amount of intervals does not exceeds the samples
Return the interval and resulting amount of intervals
"""
count = safe_get(data, "count/value", default=0)
if count < samples:
return metric, variant, 1, count
min_index = safe_get(data, "min_index/value", default=0)
max_index = safe_get(data, "max_index/value", default=min_index)
index_range = max_index - min_index + 1
interval = max(1, math.ceil(float(index_range) / samples))
max_samples = math.ceil(float(index_range) / interval)
return (
metric,
variant,
interval,
max_samples,
)
MetricData = Tuple[str, dict]
def _get_scalar_average(
self,
metrics_interval: MetricIntervalGroup,
task_id: str,
company_id: str,
event_type: EventType,
key: ScalarKey,
) -> Sequence[MetricData]:
"""
Retrieve scalar histograms per several metric variants that share the same interval
"""
interval, metrics = metrics_interval
aggregation = self._add_aggregation_average(key.get_aggregation(interval))
aggs = {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
},
"aggs": {
"variants": {
"terms": {
"field": "variant",
"size": EventSettings.max_variants_count,
"order": {"_key": "asc"},
},
"aggs": aggregation,
}
},
}
}
aggs_result = self._query_aggregation_for_task_metrics(
company_id=company_id,
event_type=event_type,
aggs=aggs,
task_id=task_id,
metrics=metrics,
)
if not aggs_result:
return {}
metrics = [
(
metric["key"],
{
variant["key"]: {
"name": variant["key"],
**key.get_iterations_data(variant),
}
for variant in metric["variants"]["buckets"]
},
)
for metric in aggs_result["metrics"]["buckets"]
]
return metrics
@staticmethod
def _add_aggregation_average(aggregation):
average_agg = {"avg_val": {"avg": {"field": "value"}}}
return {
key: {**value, "aggs": {**value.get("aggs", {}), **average_agg}}
for key, value in aggregation.items()
}
def _query_aggregation_for_task_metrics(
self,
company_id: str,
event_type: EventType,
aggs: dict,
task_id: str,
metrics: Sequence[Tuple[str, str]],
) -> dict:
"""
Return the result of elastic search query for the given aggregation filtered
by the given task_ids and metrics
"""
must = [{"term": {"task": task_id}}]
if metrics:
should = [
{
"bool": {
"must": [
{"term": {"metric": metric}},
{"term": {"variant": variant}},
]
}
}
for metric, variant in metrics
]
must.append({"bool": {"should": should}})
es_req = {
"size": 0,
"query": {"bool": {"must": must}},
"aggs": aggs,
}
with translate_errors_context(), TimingContext("es", "task_stats_scalar"):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req,
)
return es_res.get("aggregations")
def get_tasks_metrics(
self, company_id, task_ids: Sequence, event_type: EventType
) -> Sequence:
"""
For the requested tasks return all the metrics that
reported events of the requested types
"""
if check_empty_data(self.es, company_id, event_type):
return {}
with ThreadPoolExecutor(EventSettings.max_workers) as pool:
res = pool.map(
partial(
self._get_task_metrics,
company_id=company_id,
event_type=event_type,
),
task_ids,
)
return list(zip(task_ids, res))
def _get_task_metrics(
self, task_id: str, company_id: str, event_type: EventType
) -> Sequence:
es_req = {
"size": 0,
"query": {"bool": {"must": [{"term": {"task": task_id}}]}},
"aggs": {
"metrics": {
"terms": {
"field": "metric",
"size": EventSettings.max_metrics_count,
"order": {"_key": "asc"},
}
}
},
}
with translate_errors_context(), TimingContext("es", "_get_task_metrics"):
es_res = search_company_events(
self.es, company_id=company_id, event_type=event_type, body=es_req
)
return [
metric["key"]
for metric in safe_get(es_res, "aggregations/metrics/buckets", default=[])
]

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from typing import Optional, Tuple, Sequence
import attr
from elasticsearch import Elasticsearch
from apiserver.bll.event.event_common import (
check_empty_data,
search_company_events,
EventType,
)
from apiserver.database.errors import translate_errors_context
from apiserver.timing_context import TimingContext
@attr.s(auto_attribs=True)
class TaskEventsResult:
total_events: int = 0
next_scroll_id: str = None
events: list = attr.Factory(list)
class LogEventsIterator:
EVENT_TYPE = EventType.task_log
def __init__(self, es: Elasticsearch):
self.es = es
def get_task_events(
self,
company_id: str,
task_id: str,
batch_size: int,
navigate_earlier: bool = True,
from_timestamp: Optional[int] = None,
) -> TaskEventsResult:
if check_empty_data(self.es, company_id, self.EVENT_TYPE):
return TaskEventsResult()
res = TaskEventsResult()
res.events, res.total_events = self._get_events(
company_id=company_id,
task_id=task_id,
batch_size=batch_size,
navigate_earlier=navigate_earlier,
from_timestamp=from_timestamp,
)
return res
def _get_events(
self,
company_id: str,
task_id: str,
batch_size: int,
navigate_earlier: bool,
from_timestamp: Optional[int],
) -> Tuple[Sequence[dict], int]:
"""
Return up to 'batch size' events starting from the previous timestamp either in the
direction of earlier events (navigate_earlier=True) or in the direction of later events.
If last_min_timestamp and last_max_timestamp are not set then start either from latest or earliest.
For the last timestamp all the events are brought (even if the resulting size
exceeds batch_size) so that this timestamp events will not be lost between the calls.
In case any events were received update 'last_min_timestamp' and 'last_max_timestamp'
"""
# retrieve the next batch of events
es_req = {
"size": batch_size,
"query": {"term": {"task": task_id}},
"sort": {"timestamp": "desc" if navigate_earlier else "asc"},
}
if from_timestamp:
es_req["search_after"] = [from_timestamp]
with translate_errors_context(), TimingContext("es", "get_task_events"):
es_result = search_company_events(
self.es,
company_id=company_id,
event_type=self.EVENT_TYPE,
body=es_req,
)
hits = es_result["hits"]["hits"]
hits_total = es_result["hits"]["total"]["value"]
if not hits:
return [], hits_total
events = [hit["_source"] for hit in hits]
# retrieve the events that match the last event timestamp
# but did not make it into the previous call due to batch_size limitation
es_req = {
"size": 10000,
"query": {
"bool": {
"must": [
{"term": {"task": task_id}},
{"term": {"timestamp": events[-1]["timestamp"]}},
]
}
},
}
es_result = search_company_events(
self.es,
company_id=company_id,
event_type=self.EVENT_TYPE,
body=es_req,
)
last_second_hits = es_result["hits"]["hits"]
if not last_second_hits or len(last_second_hits) < 2:
# if only one element is returned for the last timestamp
# then it is already present in the events
return events, hits_total
already_present_ids = set(hit["_id"] for hit in hits)
last_second_events = [
hit["_source"]
for hit in last_second_hits
if hit["_id"] not in already_present_ids
]
# return the list merged from original query results +
# leftovers from the last timestamp
return (
[*events, *last_second_events],
hits_total,
)

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"""
Module for polymorphism over different types of X axes in scalar aggregations
"""
from abc import ABC, abstractmethod
from enum import auto
from apiserver.utilities.stringenum import StringEnum
from apiserver.bll.util import extract_properties_to_lists
from apiserver.config_repo import config
log = config.logger(__file__)
class ScalarKeyEnum(StringEnum):
"""
String enum representing X axes key
"""
iter = auto()
timestamp = auto()
iso_time = auto()
class ScalarKey(ABC):
"""
Abstract scalar key
"""
_enum_to_key = {}
bucket_key_key = "key"
@property
@abstractmethod
def enum_value(self) -> ScalarKeyEnum:
"""
Enum value accepted in API requests
"""
pass
@property
@abstractmethod
def name(self) -> str:
"""
Key name. Used as arbitrary internal key in elasticsearch queries
"""
pass
@property
@abstractmethod
def field(self) -> str:
"""
Event key to aggregate by
"""
pass
@abstractmethod
def get_aggregation(self, interval: int) -> dict:
"""
Get aggregation for this type of key
:param interval: elasticsearch aggregation interval
"""
pass
def __init_subclass__(cls, **kwargs):
"""
Save a mapping from enum values to key class
"""
if cls.enum_value not in ScalarKeyEnum:
raise ValueError(f"{cls.enum_value!r} not in {ScalarKeyEnum.__name__}")
if cls.enum_value in cls._enum_to_key:
log.warning(
f"'{cls.enum_value.value}' is already registered to {ScalarKey.__name__}"
)
cls._enum_to_key[cls.enum_value] = cls
@classmethod
def resolve(cls, key: ScalarKeyEnum):
"""
Create a key instance from enum instance
"""
return cls._enum_to_key[key]()
def get_iterations_data(self, iter_buckets: dict) -> dict:
"""
Convert a list of bucket entries to `x`s array and `y`s array
"""
return extract_properties_to_lists(
("x", "y"),
iter_buckets[self.name]["buckets"],
self._get_iterations_data_single,
)
def _get_iterations_data_single(self, iter_data):
"""
Extract x value and y value from a single bucket item
"""
return int(iter_data[self.bucket_key_key]), iter_data["avg_val"]["value"]
class TimestampKey(ScalarKey):
"""
Aggregate by timestamp in milliseconds since epoch
"""
name = "timestamp"
field = "timestamp"
enum_value = ScalarKeyEnum.timestamp
def get_aggregation(self, interval: int) -> dict:
return {
self.name: {
"date_histogram": {
"field": "timestamp",
"fixed_interval": f"{interval}ms",
"min_doc_count": 1,
}
}
}
class IterKey(ScalarKey):
"""
Aggregate by iteration number
"""
name = "iters"
field = "iter"
enum_value = ScalarKeyEnum.iter
def get_aggregation(self, interval: int) -> dict:
return {
self.name: {
"histogram": {"field": "iter", "interval": interval, "min_doc_count": 1}
}
}
class ISOTimeKey(ScalarKey):
"""
Aggregate by time formatted as ISO strings
"""
name = "iso_time"
field = "timestamp"
enum_value = ScalarKeyEnum.iso_time
bucket_key_key = "key_as_string"
def get_aggregation(self, interval: int) -> dict:
return {
self.name: {
"date_histogram": {
"field": "timestamp",
"fixed_interval": f"{interval}ms",
"min_doc_count": 1,
"format": "strict_date_time",
}
}
}
def _get_iterations_data_single(self, iter_data):
return iter_data[self.bucket_key_key], iter_data["avg_val"]["value"]

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from typing import Optional, Sequence
from mongoengine import Q
from apiserver.database.model.model import Model
from apiserver.database.utils import get_company_or_none_constraint
class ModelBLL:
def get_frameworks(self, company, project_ids: Optional[Sequence]) -> Sequence:
"""
Return the list of unique frameworks used by company and public models
If project ids passed then only models from these projects are considered
"""
query = get_company_or_none_constraint(company)
if project_ids:
query &= Q(project__in=project_ids)
return Model.objects(query).distinct(field="framework")

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from collections import defaultdict
from enum import Enum
from operator import itemgetter
from typing import Sequence, Dict, Optional
from mongoengine import Q
from apiserver.config_repo import config
from apiserver.database.model import EntityVisibility
from apiserver.database.model.model import Model
from apiserver.database.model.task.task import Task
from apiserver.redis_manager import redman
from .tags_cache import _TagsCache
log = config.logger(__file__)
class Tags(Enum):
Task = "task"
Model = "model"
class OrgBLL:
def __init__(self, redis=None):
self.redis = redis or redman.connection("apiserver")
self._task_tags = _TagsCache(Task, self.redis)
self._model_tags = _TagsCache(Model, self.redis)
def get_tags(
self,
company_id: str,
entity: Tags,
include_system: bool = False,
filter_: Dict[str, Sequence[str]] = None,
projects: Sequence[str] = None,
) -> dict:
tags_cache = self._get_tags_cache_for_entity(entity)
if not projects:
return tags_cache.get_tags(
company_id, include_system=include_system, filter_=filter_
)
ret = defaultdict(set)
for project in projects:
project_tags = tags_cache.get_tags(
company_id,
include_system=include_system,
filter_=filter_,
project=project,
)
for field, tags in project_tags.items():
ret[field] |= tags
return ret
def update_tags(
self, company_id: str, entity: Tags, project: str, tags=None, system_tags=None,
):
tags_cache = self._get_tags_cache_for_entity(entity)
tags_cache.update_tags(company_id, project, tags, system_tags)
def reset_tags(self, company_id: str, entity: Tags, projects: Sequence[str]):
tags_cache = self._get_tags_cache_for_entity(entity)
tags_cache.reset_tags(company_id, projects=projects)
def _get_tags_cache_for_entity(self, entity: Tags) -> _TagsCache:
return self._task_tags if entity == Tags.Task else self._model_tags
@classmethod
def get_parent_tasks(
cls,
company_id: str,
projects: Sequence[str],
state: Optional[EntityVisibility] = None,
) -> Sequence[dict]:
"""
Get list of unique parent tasks sorted by task name for the passed company projects
If projects is None or empty then get parents for all the company tasks
"""
query = Q(company=company_id)
if projects:
query &= Q(project__in=projects)
if state == EntityVisibility.archived:
query &= Q(system_tags__in=[EntityVisibility.archived.value])
elif state == EntityVisibility.active:
query &= Q(system_tags__nin=[EntityVisibility.archived.value])
parent_ids = set(Task.objects(query).distinct("parent"))
if not parent_ids:
return []
parents = Task.get_many_with_join(
company_id,
query=Q(id__in=parent_ids),
allow_public=True,
override_projection=("id", "name", "project.name"),
)
return sorted(parents, key=itemgetter("name"))

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from itertools import chain
from typing import Sequence, Union, Type, Dict
from mongoengine import Q
from redis import Redis
from apiserver.config_repo import config
from apiserver.database.model.base import GetMixin
from apiserver.database.model.model import Model
from apiserver.database.model.task.task import Task
log = config.logger(__file__)
_settings_prefix = "services.organization"
class _TagsCache:
_tags_field = "tags"
_system_tags_field = "system_tags"
_dummy_tag = "__dummy__"
# prepend our list in redis with this tag since empty lists are auto deleted
def __init__(self, db_cls: Union[Type[Model], Type[Task]], redis: Redis):
self.db_cls = db_cls
self.redis = redis
@property
def _tags_cache_expiration_seconds(self):
return config.get(f"{_settings_prefix}.tags_cache.expiration_seconds", 3600)
def _get_tags_from_db(
self,
company_id: str,
field: str,
project: str = None,
filter_: Dict[str, Sequence[str]] = None,
) -> set:
query = Q(company=company_id)
if filter_:
for name, vals in filter_.items():
if vals:
query &= GetMixin.get_list_field_query(name, vals)
if project:
query &= Q(project=project)
return self.db_cls.objects(query).distinct(field)
def _get_tags_cache_key(
self,
company_id: str,
field: str,
project: str = None,
filter_: Dict[str, Sequence[str]] = None,
):
"""
Project None means 'from all company projects'
The key is built in the way that scanning company keys for 'all company projects'
will not return the keys related to the particular company projects and vice versa.
So that we can have a fine grain control on what redis keys to invalidate
"""
filter_str = None
if filter_:
filter_str = "_".join(
["filter", *chain.from_iterable([f, *v] for f, v in filter_.items())]
)
key_parts = [field, company_id, project, self.db_cls.__name__, filter_str]
return "_".join(filter(None, key_parts))
def get_tags(
self,
company_id: str,
include_system: bool = False,
filter_: Dict[str, Sequence[str]] = None,
project: str = None,
) -> dict:
"""
Get tags and optionally system tags for the company
Return the dictionary of tags per tags field name
The function retrieves both cached values from Redis in one call
and re calculates any of them if missing in Redis
"""
fields = [self._tags_field]
if include_system:
fields.append(self._system_tags_field)
ret = {}
for field in fields:
redis_key = self._get_tags_cache_key(
company_id, field=field, project=project, filter_=filter_
)
cached_tags = self.redis.lrange(redis_key, 0, -1)
if cached_tags:
tags = [c.decode() for c in cached_tags[1:]]
else:
tags = list(
self._get_tags_from_db(
company_id, field=field, project=project, filter_=filter_
)
)
self.redis.rpush(redis_key, self._dummy_tag, *tags)
self.redis.expire(redis_key, self._tags_cache_expiration_seconds)
ret[field] = set(tags)
return ret
def update_tags(self, company_id: str, project: str, tags=None, system_tags=None):
"""
Updates tags. If reset is set then both tags and system_tags
are recalculated. Otherwise only those that are not 'None'
"""
fields = [
field
for field, update in (
(self._tags_field, tags),
(self._system_tags_field, system_tags),
)
if update is not None
]
if not fields:
return
self._delete_redis_keys(company_id, projects=[project], fields=fields)
def reset_tags(self, company_id: str, projects: Sequence[str]):
self._delete_redis_keys(
company_id,
projects=projects,
fields=(self._tags_field, self._system_tags_field),
)
def _delete_redis_keys(
self, company_id: str, projects: [Sequence[str]], fields: Sequence[str]
):
redis_keys = list(
chain.from_iterable(
self.redis.keys(
self._get_tags_cache_key(company_id, field=f, project=p) + "*"
)
for f in fields
for p in set(projects) | {None}
)
)
if redis_keys:
self.redis.delete(*redis_keys)

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from .project_bll import ProjectBLL

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from datetime import datetime
from typing import Sequence, Optional, Type
from mongoengine import Q, Document
from apiserver import database
from apiserver.apierrors import errors
from apiserver.config_repo import config
from apiserver.database.model.model import Model
from apiserver.database.model.project import Project
from apiserver.database.model.task.task import Task
from apiserver.timing_context import TimingContext
log = config.logger(__file__)
class ProjectBLL:
@classmethod
def get_active_users(
cls, company, project_ids: Sequence, user_ids: Optional[Sequence] = None
) -> set:
"""
Get the set of user ids that created tasks/models in the given projects
If project_ids is empty then all projects are examined
If user_ids are passed then only subset of these users is returned
"""
with TimingContext("mongo", "active_users_in_projects"):
res = set()
query = Q(company=company)
if project_ids:
query &= Q(project__in=project_ids)
if user_ids:
query &= Q(user__in=user_ids)
for cls_ in (Task, Model):
res |= set(cls_.objects(query).distinct(field="user"))
return res
@classmethod
def create(
cls,
user: str,
company: str,
name: str,
description: str,
tags: Sequence[str] = None,
system_tags: Sequence[str] = None,
default_output_destination: str = None,
) -> str:
"""
Create a new project.
Returns project ID
"""
now = datetime.utcnow()
project = Project(
id=database.utils.id(),
user=user,
company=company,
name=name,
description=description,
tags=tags,
system_tags=system_tags,
default_output_destination=default_output_destination,
created=now,
last_update=now,
)
project.save()
return project.id
@classmethod
def find_or_create(
cls,
user: str,
company: str,
project_name: str,
description: str,
project_id: str = None,
tags: Sequence[str] = None,
system_tags: Sequence[str] = None,
default_output_destination: str = None,
) -> str:
"""
Find a project named `project_name` or create a new one.
Returns project ID
"""
if not project_id and not project_name:
raise ValueError("project id or name required")
if project_id:
project = Project.objects(company=company, id=project_id).only("id").first()
if not project:
raise errors.bad_request.InvalidProjectId(id=project_id)
return project_id
project = Project.objects(company=company, name=project_name).only("id").first()
if project:
return project.id
return cls.create(
user=user,
company=company,
name=project_name,
description=description,
tags=tags,
system_tags=system_tags,
default_output_destination=default_output_destination,
)
@classmethod
def move_under_project(
cls,
entity_cls: Type[Document],
user: str,
company: str,
ids: Sequence[str],
project: str = None,
project_name: str = None,
):
"""
Move a batch of entities to `project` or a project named `project_name` (create if does not exist)
"""
with TimingContext("mongo", "move_under_project"):
project = cls.find_or_create(
user=user,
company=company,
project_id=project,
project_name=project_name,
description="Auto-generated during move",
)
extra = (
{"set__last_change": datetime.utcnow()}
if hasattr(entity_cls, "last_change")
else {}
)
entity_cls.objects(company=company, id__in=ids).update(set__project=project, **extra)
return project

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from .builder import Builder

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from typing import Optional, Sequence, Iterable, Union
from apiserver.config_repo import config
log = config.logger(__file__)
RANGE_IGNORE_VALUE = -1
class Builder:
@staticmethod
def dates_range(from_date: Union[int, float], to_date: Union[int, float]) -> dict:
return {
"range": {
"timestamp": {
"gte": int(from_date),
"lte": int(to_date),
"format": "epoch_second",
}
}
}
@staticmethod
def terms(field: str, values: Iterable[str]) -> dict:
return {"terms": {field: list(values)}}
@staticmethod
def normalize_range(
range_: Sequence[Union[int, float]],
ignore_value: Union[int, float] = RANGE_IGNORE_VALUE,
) -> Optional[Sequence[Union[int, float]]]:
if not range_ or set(range_) == {ignore_value}:
return None
if len(range_) < 2:
return [range_[0]] * 2
return range_

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from .queue_bll import QueueBLL

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from collections import defaultdict
from datetime import datetime
from typing import Callable, Sequence, Optional, Tuple
from elasticsearch import Elasticsearch
from apiserver import database
from apiserver.es_factory import es_factory
from apiserver.apierrors import errors
from apiserver.bll.queue.queue_metrics import QueueMetrics
from apiserver.bll.workers import WorkerBLL
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.queue import Queue, Entry
log = config.logger(__file__)
class QueueBLL(object):
def __init__(self, worker_bll: WorkerBLL = None, es: Elasticsearch = None):
self.worker_bll = worker_bll or WorkerBLL()
self.es = es or es_factory.connect("workers")
self._metrics = QueueMetrics(self.es)
@property
def metrics(self) -> QueueMetrics:
return self._metrics
@staticmethod
def create(
company_id: str,
name: str,
tags: Optional[Sequence[str]] = None,
system_tags: Optional[Sequence[str]] = None,
) -> Queue:
"""Creates a queue"""
with translate_errors_context():
now = datetime.utcnow()
queue = Queue(
id=database.utils.id(),
company=company_id,
created=now,
name=name,
tags=tags or [],
system_tags=system_tags or [],
last_update=now,
)
queue.save()
return queue
def get_by_id(
self, company_id: str, queue_id: str, only: Optional[Sequence[str]] = None
) -> Queue:
"""
Get queue by id
:raise errors.bad_request.InvalidQueueId: if the queue is not found
"""
with translate_errors_context():
query = dict(id=queue_id, company=company_id)
qs = Queue.objects(**query)
if only:
qs = qs.only(*only)
queue = qs.first()
if not queue:
raise errors.bad_request.InvalidQueueId(**query)
return queue
@classmethod
def get_queue_with_task(cls, company_id: str, queue_id: str, task_id: str) -> Queue:
with translate_errors_context():
query = dict(id=queue_id, company=company_id)
queue = Queue.objects(entries__task=task_id, **query).first()
if not queue:
raise errors.bad_request.InvalidQueueOrTaskNotQueued(
task=task_id, **query
)
return queue
def get_default(self, company_id: str) -> Queue:
"""
Get the default queue
:raise errors.bad_request.NoDefaultQueue: if the default queue not found
:raise errors.bad_request.MultipleDefaultQueues: if more than one default queue is found
"""
with translate_errors_context():
res = Queue.objects(company=company_id, system_tags="default").only(
"id", "name"
)
if not res:
raise errors.bad_request.NoDefaultQueue()
if len(res) > 1:
raise errors.bad_request.MultipleDefaultQueues(
queues=tuple(r.id for r in res)
)
return res.first()
def update(
self, company_id: str, queue_id: str, **update_fields
) -> Tuple[int, dict]:
"""
Partial update of the queue from update_fields
:raise errors.bad_request.InvalidQueueId: if the queue is not found
:return: number of updated objects and updated fields dictionary
"""
with translate_errors_context():
# validate the queue exists
self.get_by_id(company_id=company_id, queue_id=queue_id, only=("id",))
return Queue.safe_update(company_id, queue_id, update_fields)
def delete(self, company_id: str, queue_id: str, force: bool) -> None:
"""
Delete the queue
:raise errors.bad_request.InvalidQueueId: if the queue is not found
:raise errors.bad_request.QueueNotEmpty: if the queue is not empty and 'force' not set
"""
with translate_errors_context():
queue = self.get_by_id(company_id=company_id, queue_id=queue_id)
if queue.entries and not force:
raise errors.bad_request.QueueNotEmpty(
"use force=true to delete", id=queue_id
)
queue.delete()
def get_all(self, company_id: str, query_dict: dict) -> Sequence[dict]:
"""Get all the queues according to the query"""
with translate_errors_context():
return Queue.get_many(
company=company_id, parameters=query_dict, query_dict=query_dict
)
def get_queue_infos(self, company_id: str, query_dict: dict) -> Sequence[dict]:
"""
Get infos on all the company queues, including queue tasks and workers
"""
projection = Queue.get_extra_projection("entries.task.name")
with translate_errors_context():
res = Queue.get_many_with_join(
company=company_id,
query_dict=query_dict,
override_projection=projection,
)
queue_workers = defaultdict(list)
for worker in self.worker_bll.get_all(company_id):
for queue in worker.queues:
queue_workers[queue].append(worker)
for item in res:
item["workers"] = [
{
"name": w.id,
"ip": w.ip,
"task": w.task.to_struct() if w.task else None,
}
for w in queue_workers.get(item["id"], [])
]
return res
def add_task(self, company_id: str, queue_id: str, task_id: str) -> dict:
"""
Add the task to the queue and return the queue update results
:raise errors.bad_request.TaskAlreadyQueued: if the task is already in the queue
:raise errors.bad_request.InvalidQueueOrTaskNotQueued: if the queue update operation failed
"""
with translate_errors_context():
queue = self.get_by_id(company_id=company_id, queue_id=queue_id)
if any(e.task == task_id for e in queue.entries):
raise errors.bad_request.TaskAlreadyQueued(task=task_id)
self.metrics.log_queue_metrics_to_es(company_id=company_id, queues=[queue])
entry = Entry(added=datetime.utcnow(), task=task_id)
query = dict(id=queue_id, company=company_id)
res = Queue.objects(entries__task__ne=task_id, **query).update_one(
push__entries=entry, last_update=datetime.utcnow(), upsert=False
)
if not res:
raise errors.bad_request.InvalidQueueOrTaskNotQueued(
task=task_id, **query
)
return res
def get_next_task(self, company_id: str, queue_id: str) -> Optional[Entry]:
"""
Atomically pop and return the first task from the queue (or None)
:raise errors.bad_request.InvalidQueueId: if the queue does not exist
"""
with translate_errors_context():
query = dict(id=queue_id, company=company_id)
queue = Queue.objects(**query).modify(pop__entries=-1, upsert=False)
if not queue:
raise errors.bad_request.InvalidQueueId(**query)
self.metrics.log_queue_metrics_to_es(company_id, queues=[queue])
if not queue.entries:
return
try:
Queue.objects(**query).update(last_update=datetime.utcnow())
except Exception:
log.exception("Error while updating Queue.last_update")
return queue.entries[0]
def remove_task(self, company_id: str, queue_id: str, task_id: str) -> int:
"""
Removes the task from the queue and returns the number of removed items
:raise errors.bad_request.InvalidQueueOrTaskNotQueued: if the task is not found in the queue
"""
with translate_errors_context():
queue = self.get_queue_with_task(
company_id=company_id, queue_id=queue_id, task_id=task_id
)
self.metrics.log_queue_metrics_to_es(company_id, queues=[queue])
entries_to_remove = [e for e in queue.entries if e.task == task_id]
query = dict(id=queue_id, company=company_id)
res = Queue.objects(entries__task=task_id, **query).update_one(
pull_all__entries=entries_to_remove, last_update=datetime.utcnow()
)
return len(entries_to_remove) if res else 0
def reposition_task(
self,
company_id: str,
queue_id: str,
task_id: str,
pos_func: Callable[[int], int],
) -> int:
"""
Moves the task in the queue to the position calculated by pos_func
Returns the updated task position in the queue
"""
with translate_errors_context():
queue = self.get_queue_with_task(
company_id=company_id, queue_id=queue_id, task_id=task_id
)
position = next(i for i, e in enumerate(queue.entries) if e.task == task_id)
new_position = pos_func(position)
if new_position != position:
entry = queue.entries[position]
query = dict(id=queue_id, company=company_id)
updated = Queue.objects(entries__task=task_id, **query).update_one(
pull__entries=entry, last_update=datetime.utcnow()
)
if not updated:
raise errors.bad_request.RemovedDuringReposition(
task=task_id, **query
)
inst = {"$push": {"entries": {"$each": [entry.to_proper_dict()]}}}
if new_position >= 0:
inst["$push"]["entries"]["$position"] = new_position
res = Queue.objects(entries__task__ne=task_id, **query).update_one(
__raw__=inst
)
if not res:
raise errors.bad_request.FailedAddingDuringReposition(
task=task_id, **query
)
return new_position

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from collections import defaultdict
from datetime import datetime
from typing import Sequence
import elasticsearch.helpers
from elasticsearch import Elasticsearch
from apiserver.es_factory import es_factory
from apiserver.apierrors.errors import bad_request
from apiserver.bll.query import Builder as QueryBuilder
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.queue import Queue, Entry
from apiserver.timing_context import TimingContext
log = config.logger(__file__)
class QueueMetrics:
class EsKeys:
WAITING_TIME_FIELD = "average_waiting_time"
QUEUE_LENGTH_FIELD = "queue_length"
TIMESTAMP_FIELD = "timestamp"
QUEUE_FIELD = "queue"
def __init__(self, es: Elasticsearch):
self.es = es
@staticmethod
def _queue_metrics_prefix_for_company(company_id: str) -> str:
"""Returns the es index prefix for the company"""
return f"queue_metrics_{company_id}_"
@staticmethod
def _get_es_index_suffix():
"""Get the index name suffix for storing current month data"""
return datetime.utcnow().strftime("%Y-%m")
@staticmethod
def _calc_avg_waiting_time(entries: Sequence[Entry]) -> float:
"""
Calculate avg waiting time for the given tasks.
Return 0 if the list is empty
"""
if not entries:
return 0
now = datetime.utcnow()
total_waiting_in_secs = sum((now - e.added).total_seconds() for e in entries)
return total_waiting_in_secs / len(entries)
def log_queue_metrics_to_es(self, company_id: str, queues: Sequence[Queue]) -> bool:
"""
Calculate and write queue statistics (avg waiting time and queue length) to Elastic
:return: True if the write to es was successful, false otherwise
"""
es_index = (
self._queue_metrics_prefix_for_company(company_id)
+ self._get_es_index_suffix()
)
timestamp = es_factory.get_timestamp_millis()
def make_doc(queue: Queue) -> dict:
entries = [e for e in queue.entries if e.added]
return dict(
_index=es_index,
_source={
self.EsKeys.TIMESTAMP_FIELD: timestamp,
self.EsKeys.QUEUE_FIELD: queue.id,
self.EsKeys.WAITING_TIME_FIELD: self._calc_avg_waiting_time(
entries
),
self.EsKeys.QUEUE_LENGTH_FIELD: len(entries),
},
)
actions = list(map(make_doc, queues))
es_res = elasticsearch.helpers.bulk(self.es, actions)
added, errors = es_res[:2]
return (added == len(actions)) and not errors
def _log_current_metrics(self, company_id: str, queue_ids=Sequence[str]):
query = dict(company=company_id)
if queue_ids:
query["id__in"] = list(queue_ids)
queues = Queue.objects(**query)
self.log_queue_metrics_to_es(company_id, queues=list(queues))
def _search_company_metrics(self, company_id: str, es_req: dict) -> dict:
return self.es.search(
index=f"{self._queue_metrics_prefix_for_company(company_id)}*",
body=es_req,
)
@classmethod
def _get_dates_agg(cls, interval) -> dict:
"""
Aggregation for building date histogram with internal grouping per queue.
We are grouping by queue inside date histogram and not vice versa so that
it will be easy to average between queue metrics inside each date bucket.
Ignore empty buckets.
"""
return {
"dates": {
"date_histogram": {
"field": cls.EsKeys.TIMESTAMP_FIELD,
"fixed_interval": f"{interval}s",
"min_doc_count": 1,
},
"aggs": {
"queues": {
"terms": {"field": cls.EsKeys.QUEUE_FIELD},
"aggs": cls._get_top_waiting_agg(),
}
},
}
}
@classmethod
def _get_top_waiting_agg(cls) -> dict:
"""
Aggregation for getting max waiting time and the corresponding queue length
inside each date->queue bucket
"""
return {
"top_avg_waiting": {
"top_hits": {
"sort": [
{cls.EsKeys.WAITING_TIME_FIELD: {"order": "desc"}},
{cls.EsKeys.QUEUE_LENGTH_FIELD: {"order": "desc"}},
],
"_source": {
"includes": [
cls.EsKeys.WAITING_TIME_FIELD,
cls.EsKeys.QUEUE_LENGTH_FIELD,
]
},
"size": 1,
}
}
}
def get_queue_metrics(
self,
company_id: str,
from_date: float,
to_date: float,
interval: int,
queue_ids: Sequence[str],
) -> dict:
"""
Get the company queue metrics in the specified time range.
Returned as date histograms of average values per queue and metric type.
The from_date is extended by 'metrics_before_from_date' seconds from
queues.conf due to possibly small amount of points. The default extension is 3600s
In case no queue ids are specified the avg across all the
company queues is calculated for each metric
"""
# self._log_current_metrics(company, queue_ids=queue_ids)
if from_date >= to_date:
raise bad_request.FieldsValueError("from_date must be less than to_date")
seconds_before = config.get("services.queues.metrics_before_from_date", 3600)
must_terms = [QueryBuilder.dates_range(from_date - seconds_before, to_date)]
if queue_ids:
must_terms.append(QueryBuilder.terms("queue", queue_ids))
es_req = {
"size": 0,
"query": {"bool": {"must": must_terms}},
"aggs": self._get_dates_agg(interval),
}
with translate_errors_context(), TimingContext("es", "get_queue_metrics"):
res = self._search_company_metrics(company_id, es_req)
if "aggregations" not in res:
return {}
date_metrics = [
dict(
timestamp=d["key"],
queue_metrics=self._extract_queue_metrics(d["queues"]["buckets"]),
)
for d in res["aggregations"]["dates"]["buckets"]
if d["doc_count"] > 0
]
if queue_ids:
return self._datetime_histogram_per_queue(date_metrics)
return self._average_datetime_histogram(date_metrics)
@classmethod
def _datetime_histogram_per_queue(cls, date_metrics: Sequence[dict]) -> dict:
"""
Build datetime histogram per queue from datetime histogram where every
bucket contains all the queues metrics
"""
queues_data = defaultdict(list)
for date_data in date_metrics:
timestamp = date_data["timestamp"]
for queue, metrics in date_data["queue_metrics"].items():
queues_data[queue].append({"date": timestamp, **metrics})
return queues_data
@classmethod
def _average_datetime_histogram(cls, date_metrics: Sequence[dict]) -> dict:
"""
Calculate weighted averages and total count for each bucket of date_metrics histogram.
If for any queue the data is missing then take it from the previous bucket
The result is returned as a dictionary with one key 'total'
"""
queues_total = []
last_values = {}
for date_data in date_metrics:
date_metrics = date_data["queue_metrics"]
queue_metrics = {
**date_metrics,
**{k: v for k, v in last_values.items() if k not in date_metrics},
}
total_length = sum(m["queue_length"] for m in queue_metrics.values())
if total_length:
total_average = sum(
m["avg_waiting_time"] * m["queue_length"] / total_length
for m in queue_metrics.values()
)
else:
total_average = 0
queues_total.append(
dict(
date=date_data["timestamp"],
avg_waiting_time=total_average,
queue_length=total_length,
)
)
for k, v in date_metrics.items():
last_values[k] = v
return dict(total=queues_total)
@classmethod
def _extract_queue_metrics(cls, queue_buckets: Sequence[dict]) -> dict:
"""
Extract ES data for single date and queue bucket
"""
queue_metrics = dict()
for queue_data in queue_buckets:
if not queue_data["doc_count"]:
continue
res = queue_data["top_avg_waiting"]["hits"]["hits"][0]["_source"]
queue_metrics[queue_data["key"]] = {
"queue_length": res[cls.EsKeys.QUEUE_LENGTH_FIELD],
"avg_waiting_time": res[cls.EsKeys.WAITING_TIME_FIELD],
}
return queue_metrics

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from contextlib import contextmanager
from typing import Optional, TypeVar, Generic, Type, Callable
from redis import StrictRedis
from apiserver import database
from apiserver.timing_context import TimingContext
T = TypeVar("T")
def _do_nothing(_: T):
return
class RedisCacheManager(Generic[T]):
"""
Class for store/retrieve of state objects from redis
self.state_class - class of the state
self.redis - instance of redis
self.expiration_interval - expiration interval in seconds
"""
def __init__(
self, state_class: Type[T], redis: StrictRedis, expiration_interval: int
):
self.state_class = state_class
self.redis = redis
self.expiration_interval = expiration_interval
def set_state(self, state: T) -> None:
redis_key = self._get_redis_key(state.id)
with TimingContext("redis", "cache_set_state"):
self.redis.set(redis_key, state.to_json())
self.redis.expire(redis_key, self.expiration_interval)
def get_state(self, state_id) -> Optional[T]:
redis_key = self._get_redis_key(state_id)
with TimingContext("redis", "cache_get_state"):
response = self.redis.get(redis_key)
if response:
return self.state_class.from_json(response)
def delete_state(self, state_id) -> None:
with TimingContext("redis", "cache_delete_state"):
self.redis.delete(self._get_redis_key(state_id))
def _get_redis_key(self, state_id):
return f"{self.state_class}/{state_id}"
@contextmanager
def get_or_create_state(
self,
state_id=None,
init_state: Callable[[T], None] = _do_nothing,
validate_state: Callable[[T], None] = _do_nothing,
):
"""
Try to retrieve state with the given id from the Redis cache if yes then validates it
If no then create a new one with randomly generated id
Yield the state and write it back to redis once the user code block exits
:param state_id: id of the state to retrieve
:param init_state: user callback to init the newly created state
If not passed then no init except for the id generation is done
:param validate_state: user callback to validate the state if retrieved from cache
Should throw an exception if the state is not valid. If not passed then no validation is done
"""
state = self.get_state(state_id) if state_id else None
if state:
validate_state(state)
else:
state = self.state_class(id=database.utils.id())
init_state(state)
try:
yield state
finally:
self.set_state(state)

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from datetime import datetime
import operator
from threading import Thread, Lock
from time import sleep
import attr
import psutil
from apiserver.utilities.threads_manager import ThreadsManager
class ResourceMonitor(Thread):
@attr.s(auto_attribs=True)
class Sample:
cpu_usage: float = 0.0
mem_used_gb: float = 0
mem_free_gb: float = 0
@classmethod
def _apply(cls, op, *samples):
return cls(
**{
field: op(*(getattr(sample, field) for sample in samples))
for field in attr.fields_dict(cls)
}
)
def min(self, sample):
return self._apply(min, self, sample)
def max(self, sample):
return self._apply(max, self, sample)
def avg(self, sample, count):
res = self._apply(lambda x: x * count, self)
res = self._apply(operator.add, res, sample)
res = self._apply(lambda x: x / (count + 1), res)
return res
def __init__(self, sample_interval_sec=5):
super(ResourceMonitor, self).__init__(daemon=True)
self.sample_interval_sec = sample_interval_sec
self._lock = Lock()
self._clear()
def _clear(self):
sample = self._get_sample()
self._avg = sample
self._min = sample
self._max = sample
self._clear_time = datetime.utcnow()
self._count = 1
@classmethod
def _get_sample(cls) -> Sample:
return cls.Sample(
cpu_usage=psutil.cpu_percent(),
mem_used_gb=psutil.virtual_memory().used / (1024 ** 3),
mem_free_gb=psutil.virtual_memory().free / (1024 ** 3),
)
def run(self):
while not ThreadsManager.terminating:
sleep(self.sample_interval_sec)
sample = self._get_sample()
with self._lock:
self._min = self._min.min(sample)
self._max = self._max.max(sample)
self._avg = self._avg.avg(sample, self._count)
self._count += 1
def get_stats(self) -> dict:
""" Returns current resource statistics and clears internal resource statistics """
with self._lock:
min_ = attr.asdict(self._min)
max_ = attr.asdict(self._max)
avg = attr.asdict(self._avg)
interval = datetime.utcnow() - self._clear_time
self._clear()
return {
"interval_sec": interval.total_seconds(),
"num_cores": psutil.cpu_count(),
**{
k: {"min": v, "max": max_[k], "avg": avg[k]}
for k, v in min_.items()
}
}

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import logging
import queue
import random
import time
from datetime import timedelta, datetime
from time import sleep
from typing import Sequence, Optional
import dpath
import requests
from requests.adapters import HTTPAdapter
from requests.packages.urllib3.util.retry import Retry
from apiserver.bll.query import Builder as QueryBuilder
from apiserver.bll.util import get_server_uuid
from apiserver.bll.workers import WorkerStats, WorkerBLL
from apiserver.config_repo import config
from apiserver.config.info import get_deployment_type
from apiserver.database.model import Company, User
from apiserver.database.model.queue import Queue
from apiserver.database.model.task.task import Task
from apiserver.tools import safe_get
from apiserver.utilities.json import dumps
from apiserver.utilities.threads_manager import ThreadsManager
from apiserver.version import __version__ as current_version
from .resource_monitor import ResourceMonitor
log = config.logger(__file__)
worker_bll = WorkerBLL()
class StatisticsReporter:
threads = ThreadsManager("Statistics", resource_monitor=ResourceMonitor)
send_queue = queue.Queue()
supported = config.get("apiserver.statistics.supported", True)
@classmethod
def start(cls):
cls.start_sender()
cls.start_reporter()
@classmethod
@threads.register("reporter", daemon=True)
def start_reporter(cls):
"""
Periodically send statistics reports for companies who have opted in.
Note: in trains we usually have only a single company
"""
if not cls.supported:
return
report_interval = timedelta(
hours=config.get("apiserver.statistics.report_interval_hours", 24)
)
sleep(report_interval.total_seconds())
while not ThreadsManager.terminating:
try:
for company in Company.objects(
defaults__stats_option__enabled=True
).only("id"):
stats = cls.get_statistics(company.id)
cls.send_queue.put(stats)
except Exception as ex:
log.exception(f"Failed collecting stats: {str(ex)}")
sleep(report_interval.total_seconds())
@classmethod
@threads.register("sender", daemon=True)
def start_sender(cls):
if not cls.supported:
return
url = config.get("apiserver.statistics.url")
retries = config.get("apiserver.statistics.max_retries", 5)
max_backoff = config.get("apiserver.statistics.max_backoff_sec", 5)
session = requests.Session()
adapter = HTTPAdapter(max_retries=Retry(retries))
session.mount("http://", adapter)
session.mount("https://", adapter)
session.headers["Content-type"] = "application/json"
WarningFilter.attach()
while not ThreadsManager.terminating:
try:
report = cls.send_queue.get()
# Set a random backoff factor each time we send a report
adapter.max_retries.backoff_factor = random.random() * max_backoff
session.post(url, data=dumps(report))
except Exception as ex:
pass
@classmethod
def get_statistics(cls, company_id: str) -> dict:
"""
Returns a statistics report per company
"""
return {
"time": datetime.utcnow(),
"company_id": company_id,
"server": {
"version": current_version,
"deployment": get_deployment_type(),
"uuid": get_server_uuid(),
"queues": {"count": Queue.objects(company=company_id).count()},
"users": {"count": User.objects(company=company_id).count()},
"resources": cls.threads.resource_monitor.get_stats(),
"experiments": next(
iter(cls._get_experiments_stats(company_id).values()), {}
),
},
"agents": cls._get_agents_statistics(company_id),
}
@classmethod
def _get_agents_statistics(cls, company_id: str) -> Sequence[dict]:
result = cls._get_resource_stats_per_agent(company_id, key="resources")
dpath.merge(
result, cls._get_experiments_stats_per_agent(company_id, key="experiments")
)
return [{"uuid": agent_id, **data} for agent_id, data in result.items()]
@classmethod
def _get_resource_stats_per_agent(cls, company_id: str, key: str) -> dict:
agent_resource_threshold_sec = timedelta(
hours=config.get("apiserver.statistics.report_interval_hours", 24)
).total_seconds()
to_timestamp = int(time.time())
from_timestamp = to_timestamp - int(agent_resource_threshold_sec)
es_req = {
"size": 0,
"query": QueryBuilder.dates_range(from_timestamp, to_timestamp),
"aggs": {
"workers": {
"terms": {"field": "worker"},
"aggs": {
"categories": {
"terms": {"field": "category"},
"aggs": {"count": {"cardinality": {"field": "variant"}}},
},
"metrics": {
"terms": {"field": "metric"},
"aggs": {
"min": {"min": {"field": "value"}},
"max": {"max": {"field": "value"}},
"avg": {"avg": {"field": "value"}},
},
},
},
}
},
}
res = cls._run_worker_stats_query(company_id, es_req)
def _get_cardinality_fields(categories: Sequence[dict]) -> dict:
names = {"cpu": "num_cores"}
return {
names[c["key"]]: safe_get(c, "count/value")
for c in categories
if c["key"] in names
}
def _get_metric_fields(metrics: Sequence[dict]) -> dict:
names = {
"cpu_usage": "cpu_usage",
"memory_used": "mem_used_gb",
"memory_free": "mem_free_gb",
}
return {
names[m["key"]]: {
"min": safe_get(m, "min/value"),
"max": safe_get(m, "max/value"),
"avg": safe_get(m, "avg/value"),
}
for m in metrics
if m["key"] in names
}
buckets = safe_get(res, "aggregations/workers/buckets", default=[])
return {
b["key"]: {
key: {
"interval_sec": agent_resource_threshold_sec,
**_get_cardinality_fields(safe_get(b, "categories/buckets", [])),
**_get_metric_fields(safe_get(b, "metrics/buckets", [])),
}
}
for b in buckets
}
@classmethod
def _get_experiments_stats_per_agent(cls, company_id: str, key: str) -> dict:
agent_relevant_threshold = timedelta(
days=config.get("apiserver.statistics.agent_relevant_threshold_days", 30)
)
to_timestamp = int(time.time())
from_timestamp = to_timestamp - int(agent_relevant_threshold.total_seconds())
workers = cls._get_active_workers(company_id, from_timestamp, to_timestamp)
if not workers:
return {}
stats = cls._get_experiments_stats(company_id, list(workers.keys()))
return {
worker_id: {key: {**workers[worker_id], **stat}}
for worker_id, stat in stats.items()
}
@classmethod
def _get_active_workers(
cls, company_id, from_timestamp: int, to_timestamp: int
) -> dict:
es_req = {
"size": 0,
"query": QueryBuilder.dates_range(from_timestamp, to_timestamp),
"aggs": {
"workers": {
"terms": {"field": "worker"},
"aggs": {"last_activity_time": {"max": {"field": "timestamp"}}},
}
},
}
res = cls._run_worker_stats_query(company_id, es_req)
buckets = safe_get(res, "aggregations/workers/buckets", default=[])
return {
b["key"]: {"last_activity_time": b["last_activity_time"]["value"]}
for b in buckets
}
@classmethod
def _run_worker_stats_query(cls, company_id, es_req) -> dict:
return worker_bll.es_client.search(
index=f"{WorkerStats.worker_stats_prefix_for_company(company_id)}*",
body=es_req,
)
@classmethod
def _get_experiments_stats(
cls, company_id, workers: Optional[Sequence] = None
) -> dict:
pipeline = [
{
"$match": {
"company": company_id,
"started": {"$exists": True, "$ne": None},
"last_update": {"$exists": True, "$ne": None},
"status": {"$nin": ["created", "queued"]},
**({"last_worker": {"$in": workers}} if workers else {}),
}
},
{
"$group": {
"_id": "$last_worker" if workers else None,
"count": {"$sum": 1},
"avg_run_time_sec": {
"$avg": {
"$divide": [
{"$subtract": ["$last_update", "$started"]},
1000,
]
}
},
"avg_iterations": {"$avg": "$last_iteration"},
}
},
{
"$project": {
"count": 1,
"avg_run_time_sec": {"$trunc": "$avg_run_time_sec"},
"avg_iterations": {"$trunc": "$avg_iterations"},
}
},
]
return {
group["_id"]: {k: v for k, v in group.items() if k != "_id"}
for group in Task.aggregate(pipeline)
}
class WarningFilter(logging.Filter):
@classmethod
def attach(cls):
from urllib3.connectionpool import (
ConnectionPool,
) # required to make sure the logger is created
assert ConnectionPool # make sure import is not optimized out
logging.getLogger("urllib3.connectionpool").addFilter(cls())
def filter(self, record):
if (
record.levelno == logging.WARNING
and len(record.args) > 2
and record.args[2] == "/stats"
):
return False
return True

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from hashlib import md5
from operator import itemgetter
from typing import Sequence
from apiserver.apimodels.tasks import Artifact as ApiArtifact, ArtifactId
from apiserver.bll.task.utils import get_task_for_update, update_task
from apiserver.database.model.task.task import DEFAULT_ARTIFACT_MODE, Artifact
from apiserver.timing_context import TimingContext
from apiserver.utilities.dicts import nested_get, nested_set
from apiserver.utilities.parameter_key_escaper import mongoengine_safe
def get_artifact_id(artifact: dict):
"""
Calculate id from 'key' and 'mode' fields
Return hash on on the id so that it will not contain mongo illegal characters
"""
key_hash: str = md5(artifact["key"].encode()).hexdigest()
mode: str = artifact.get("mode", DEFAULT_ARTIFACT_MODE)
return f"{key_hash}_{mode}"
def artifacts_prepare_for_save(fields: dict):
artifacts_field = ("execution", "artifacts")
artifacts = nested_get(fields, artifacts_field)
if artifacts is None:
return
nested_set(
fields, artifacts_field, value={get_artifact_id(a): a for a in artifacts}
)
def artifacts_unprepare_from_saved(fields):
artifacts_field = ("execution", "artifacts")
artifacts = nested_get(fields, artifacts_field)
if artifacts is None:
return
nested_set(
fields,
artifacts_field,
value=sorted(artifacts.values(), key=itemgetter("key", "mode")),
)
class Artifacts:
@classmethod
def add_or_update_artifacts(
cls,
company_id: str,
task_id: str,
artifacts: Sequence[ApiArtifact],
force: bool,
) -> int:
with TimingContext("mongo", "update_artifacts"):
task = get_task_for_update(
company_id=company_id,
task_id=task_id,
force=force,
)
artifacts = {
get_artifact_id(a): Artifact(**a)
for a in (api_artifact.to_struct() for api_artifact in artifacts)
}
update_cmds = {
f"set__execution__artifacts__{mongoengine_safe(name)}": value
for name, value in artifacts.items()
}
return update_task(task, update_cmds=update_cmds)
@classmethod
def delete_artifacts(
cls,
company_id: str,
task_id: str,
artifact_ids: Sequence[ArtifactId],
force: bool,
) -> int:
with TimingContext("mongo", "delete_artifacts"):
task = get_task_for_update(
company_id=company_id,
task_id=task_id,
force=force,
)
artifact_ids = [
get_artifact_id(a)
for a in (artifact_id.to_struct() for artifact_id in artifact_ids)
]
delete_cmds = {
f"unset__execution__artifacts__{id_}": 1 for id_ in set(artifact_ids)
}
return update_task(task, update_cmds=delete_cmds)

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from itertools import chain
from operator import attrgetter
from typing import Sequence, Dict
from boltons import iterutils
from apiserver.apierrors import errors
from apiserver.apimodels.tasks import (
HyperParamKey,
HyperParamItem,
ReplaceHyperparams,
Configuration,
)
from apiserver.bll.task import TaskBLL
from apiserver.bll.task.utils import get_task_for_update, update_task
from apiserver.config_repo import config
from apiserver.database.model.task.task import ParamsItem, Task, ConfigurationItem
from apiserver.timing_context import TimingContext
from apiserver.utilities.parameter_key_escaper import (
ParameterKeyEscaper,
mongoengine_safe,
)
log = config.logger(__file__)
task_bll = TaskBLL()
class HyperParams:
_properties_section = "properties"
@classmethod
def get_params(cls, company_id: str, task_ids: Sequence[str]) -> Dict[str, dict]:
only = ("id", "hyperparams")
tasks = task_bll.assert_exists(
company_id=company_id, task_ids=task_ids, only=only, allow_public=True,
)
return {
task.id: {"hyperparams": cls._get_params_list(items=task.hyperparams)}
for task in tasks
}
@classmethod
def _get_params_list(
cls, items: Dict[str, Dict[str, ParamsItem]]
) -> Sequence[dict]:
ret = list(chain.from_iterable(v.values() for v in items.values()))
return [
p.to_proper_dict() for p in sorted(ret, key=attrgetter("section", "name"))
]
@classmethod
def _normalize_params(cls, params: Sequence) -> bool:
"""
Lower case properties section and return True if it is the only section
"""
for p in params:
if p.section.lower() == cls._properties_section:
p.section = cls._properties_section
return all(p.section == cls._properties_section for p in params)
@classmethod
def delete_params(
cls,
company_id: str,
task_id: str,
hyperparams: Sequence[HyperParamKey],
force: bool,
) -> int:
with TimingContext("mongo", "delete_hyperparams"):
properties_only = cls._normalize_params(hyperparams)
task = get_task_for_update(
company_id=company_id,
task_id=task_id,
allow_all_statuses=properties_only,
force=force,
)
with_param, without_param = iterutils.partition(
hyperparams, key=lambda p: bool(p.name)
)
sections_to_delete = {p.section for p in without_param}
delete_cmds = {
f"unset__hyperparams__{ParameterKeyEscaper.escape(section)}": 1
for section in sections_to_delete
}
for item in with_param:
section = ParameterKeyEscaper.escape(item.section)
if item.section in sections_to_delete:
raise errors.bad_request.FieldsConflict(
"Cannot delete section field if the whole section was scheduled for deletion"
)
name = ParameterKeyEscaper.escape(item.name)
delete_cmds[f"unset__hyperparams__{section}__{name}"] = 1
return update_task(
task, update_cmds=delete_cmds, set_last_update=not properties_only
)
@classmethod
def edit_params(
cls,
company_id: str,
task_id: str,
hyperparams: Sequence[HyperParamItem],
replace_hyperparams: str,
force: bool,
) -> int:
with TimingContext("mongo", "edit_hyperparams"):
properties_only = cls._normalize_params(hyperparams)
task = get_task_for_update(
company_id=company_id,
task_id=task_id,
allow_all_statuses=properties_only,
force=force,
)
update_cmds = dict()
hyperparams = cls._db_dicts_from_list(hyperparams)
if replace_hyperparams == ReplaceHyperparams.all:
update_cmds["set__hyperparams"] = hyperparams
elif replace_hyperparams == ReplaceHyperparams.section:
for section, value in hyperparams.items():
update_cmds[
f"set__hyperparams__{mongoengine_safe(section)}"
] = value
else:
for section, section_params in hyperparams.items():
for name, value in section_params.items():
update_cmds[
f"set__hyperparams__{section}__{mongoengine_safe(name)}"
] = value
return update_task(
task, update_cmds=update_cmds, set_last_update=not properties_only
)
@classmethod
def _db_dicts_from_list(cls, items: Sequence[HyperParamItem]) -> Dict[str, dict]:
sections = iterutils.bucketize(items, key=attrgetter("section"))
return {
ParameterKeyEscaper.escape(section): {
ParameterKeyEscaper.escape(param.name): ParamsItem(**param.to_struct())
for param in params
}
for section, params in sections.items()
}
@classmethod
def get_configurations(
cls, company_id: str, task_ids: Sequence[str], names: Sequence[str]
) -> Dict[str, dict]:
only = ["id"]
if names:
only.extend(
f"configuration.{ParameterKeyEscaper.escape(name)}" for name in names
)
else:
only.append("configuration")
tasks = task_bll.assert_exists(
company_id=company_id, task_ids=task_ids, only=only, allow_public=True,
)
return {
task.id: {
"configuration": [
c.to_proper_dict()
for c in sorted(task.configuration.values(), key=attrgetter("name"))
]
}
for task in tasks
}
@classmethod
def get_configuration_names(
cls, company_id: str, task_ids: Sequence[str]
) -> Dict[str, list]:
with TimingContext("mongo", "get_configuration_names"):
pipeline = [
{
"$match": {
"company": {"$in": [None, "", company_id]},
"_id": {"$in": task_ids},
}
},
{"$project": {"items": {"$objectToArray": "$configuration"}}},
{"$unwind": "$items"},
{"$group": {"_id": "$_id", "names": {"$addToSet": "$items.k"}}},
]
tasks = Task.aggregate(pipeline)
return {
task["_id"]: {
"names": sorted(
ParameterKeyEscaper.unescape(name) for name in task["names"]
)
}
for task in tasks
}
@classmethod
def edit_configuration(
cls,
company_id: str,
task_id: str,
configuration: Sequence[Configuration],
replace_configuration: bool,
force: bool,
) -> int:
with TimingContext("mongo", "edit_configuration"):
task = get_task_for_update(
company_id=company_id, task_id=task_id, force=force
)
update_cmds = dict()
configuration = {
ParameterKeyEscaper.escape(c.name): ConfigurationItem(**c.to_struct())
for c in configuration
}
if replace_configuration:
update_cmds["set__configuration"] = configuration
else:
for name, value in configuration.items():
update_cmds[f"set__configuration__{mongoengine_safe(name)}"] = value
return update_task(task, update_cmds=update_cmds)
@classmethod
def delete_configuration(
cls, company_id: str, task_id: str, configuration: Sequence[str], force: bool
) -> int:
with TimingContext("mongo", "delete_configuration"):
task = get_task_for_update(
company_id=company_id, task_id=task_id, force=force
)
delete_cmds = {
f"unset__configuration__{ParameterKeyEscaper.escape(name)}": 1
for name in set(configuration)
}
return update_task(task, update_cmds=delete_cmds)

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from datetime import timedelta, datetime
from time import sleep
from apiserver.bll.task import update_project_time
from apiserver.config_repo import config
from apiserver.database.model.task.task import TaskStatus, Task
from apiserver.utilities.threads_manager import ThreadsManager
log = config.logger(__file__)
class NonResponsiveTasksWatchdog:
threads = ThreadsManager()
class _Settings:
"""
Retrieves watchdog settings from the config file
The properties are not cached so that the updates in
the config file are reflected
"""
_prefix = "services.tasks.non_responsive_tasks_watchdog"
@property
def enabled(self):
return config.get(f"{self._prefix}.enabled", True)
@property
def watch_interval_sec(self):
return config.get(f"{self._prefix}.watch_interval_sec", 900)
@property
def threshold_sec(self):
return config.get(f"{self._prefix}.threshold_sec", 7200)
settings = _Settings()
@classmethod
@threads.register("non_responsive_tasks_watchdog", daemon=True)
def start(cls):
sleep(cls.settings.watch_interval_sec)
while not ThreadsManager.terminating:
watch_interval = cls.settings.watch_interval_sec
if cls.settings.enabled:
try:
stopped = cls.cleanup_tasks(
threshold_sec=cls.settings.threshold_sec
)
log.info(f"{stopped} non-responsive tasks stopped")
except Exception as ex:
log.exception(f"Failed stopping tasks: {str(ex)}")
sleep(watch_interval)
@classmethod
def cleanup_tasks(cls, threshold_sec):
relevant_status = (TaskStatus.in_progress,)
threshold = timedelta(seconds=threshold_sec)
ref_time = datetime.utcnow() - threshold
log.info(
f"Starting cleanup cycle for running tasks last updated before {ref_time}"
)
tasks = list(
Task.objects(status__in=relevant_status, last_update__lt=ref_time).only(
"id", "name", "status", "project", "last_update"
)
)
log.info(f"{len(tasks)} non-responsive tasks found")
if not tasks:
return 0
err_count = 0
project_ids = set()
now = datetime.utcnow()
for task in tasks:
log.info(
f"Stopping {task.id} ({task.name}), last updated at {task.last_update}"
)
# noinspection PyBroadException
try:
updated = Task.objects(id=task.id, status=task.status).update(
status=TaskStatus.stopped,
status_reason="Forced stop (non-responsive)",
status_message="Forced stop (non-responsive)",
status_changed=now,
last_update=now,
last_change=now,
)
if updated:
project_ids.add(task.project)
else:
err_count += 1
except Exception as ex:
log.error("Failed setting status: %s", str(ex))
update_project_time(list(project_ids))
return len(tasks) - err_count

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import itertools
from typing import Sequence, Tuple
import dpath
from apiserver.apierrors import errors
from apiserver.database.model.task.task import Task
from apiserver.tools import safe_get
from apiserver.utilities.parameter_key_escaper import ParameterKeyEscaper
hyperparams_default_section = "Args"
hyperparams_legacy_type = "legacy"
tf_define_section = "TF_DEFINE"
def split_param_name(full_name: str, default_section: str) -> Tuple[str, str]:
"""
Return parameter section and name. The section is either TF_DEFINE or the default one
"""
if default_section is None:
return None, full_name
section, _, name = full_name.partition("/")
if section != tf_define_section:
return default_section, full_name
if not name:
raise errors.bad_request.ValidationError("Parameter name cannot be empty")
return section, name
def _get_full_param_name(param: dict) -> str:
section = param.get("section")
if section != tf_define_section:
return param["name"]
return "/".join((section, param["name"]))
def _remove_legacy_params(data: dict, with_sections: bool = False) -> int:
"""
Remove the legacy params from the data dict and return the number of removed params
If the path not found then return 0
"""
removed = 0
if not data:
return removed
if with_sections:
for section, section_data in list(data.items()):
removed += _remove_legacy_params(section_data)
if not section_data:
"""If section is empty after removing legacy params then delete it"""
del data[section]
else:
for key, param in list(data.items()):
if param.get("type") == hyperparams_legacy_type:
removed += 1
del data[key]
return removed
def _get_legacy_params(data: dict, with_sections: bool = False) -> Sequence[str]:
"""
Remove the legacy params from the data dict and return the number of removed params
If the path not found then return 0
"""
if not data:
return []
if with_sections:
return itertools.chain.from_iterable(
_get_legacy_params(section_data) for section_data in data.values()
)
return [
param for param in data.values() if param.get("type") == hyperparams_legacy_type
]
def params_prepare_for_save(fields: dict, previous_task: Task = None):
"""
If legacy hyper params or configuration is passed then replace the corresponding section in the new structure
Escape all the section and param names for hyper params and configuration to make it mongo sage
"""
for old_params_field, new_params_field, default_section in (
("execution/parameters", "hyperparams", hyperparams_default_section),
("execution/model_desc", "configuration", None),
):
legacy_params = safe_get(fields, old_params_field)
if legacy_params is None:
continue
if (
not safe_get(fields, new_params_field)
and previous_task
and previous_task[new_params_field]
):
previous_data = previous_task.to_proper_dict().get(new_params_field)
removed = _remove_legacy_params(
previous_data, with_sections=default_section is not None
)
if not legacy_params and not removed:
# if we only need to delete legacy fields from the db
# but they are not there then there is no point to proceed
continue
fields_update = {new_params_field: previous_data}
params_unprepare_from_saved(fields_update)
fields.update(fields_update)
for full_name, value in legacy_params.items():
section, name = split_param_name(full_name, default_section)
new_path = list(filter(None, (new_params_field, section, name)))
new_param = dict(name=name, type=hyperparams_legacy_type, value=str(value))
if section is not None:
new_param["section"] = section
dpath.new(fields, new_path, new_param)
dpath.delete(fields, old_params_field)
for param_field in ("hyperparams", "configuration"):
params = safe_get(fields, param_field)
if params:
escaped_params = {
ParameterKeyEscaper.escape(key): {
ParameterKeyEscaper.escape(k): v for k, v in value.items()
}
if isinstance(value, dict)
else value
for key, value in params.items()
}
dpath.set(fields, param_field, escaped_params)
def params_unprepare_from_saved(fields, copy_to_legacy=False):
"""
Unescape all section and param names for hyper params and configuration
If copy_to_legacy is set then copy hyperparams and configuration data to the legacy location for the old clients
"""
for param_field in ("hyperparams", "configuration"):
params = safe_get(fields, param_field)
if params:
unescaped_params = {
ParameterKeyEscaper.unescape(key): {
ParameterKeyEscaper.unescape(k): v for k, v in value.items()
}
if isinstance(value, dict)
else value
for key, value in params.items()
}
dpath.set(fields, param_field, unescaped_params)
if copy_to_legacy:
for new_params_field, old_params_field, use_sections in (
(f"hyperparams", "execution/parameters", True),
(f"configuration", "execution/model_desc", False),
):
legacy_params = _get_legacy_params(
safe_get(fields, new_params_field), with_sections=use_sections
)
if legacy_params:
dpath.new(
fields,
old_params_field,
{_get_full_param_name(p): p["value"] for p in legacy_params},
)
def _process_path(path: str):
"""
Frontend does a partial escaping on the path so the all '.' in section and key names are escaped
Need to unescape and apply a full mongo escaping
"""
parts = path.split(".")
if len(parts) < 2 or len(parts) > 3:
raise errors.bad_request.ValidationError("invalid task field", path=path)
return ".".join(
ParameterKeyEscaper.escape(ParameterKeyEscaper.unescape(p)) for p in parts
)
def escape_paths(paths: Sequence[str]) -> Sequence[str]:
for old_prefix, new_prefix in (
("execution.parameters", f"hyperparams.{hyperparams_default_section}"),
("execution.model_desc", f"configuration"),
):
path: str
paths = [path.replace(old_prefix, new_prefix) for path in paths]
for prefix in (
"hyperparams.",
"-hyperparams.",
"configuration.",
"-configuration.",
):
paths = [
_process_path(path) if path.startswith(prefix) else path for path in paths
]
return paths

View File

@@ -0,0 +1,715 @@
from collections import OrderedDict
from datetime import datetime
from typing import Collection, Sequence, Tuple, Any, Optional, Dict
import dpath
import six
from mongoengine import Q
from six import string_types
import apiserver.database.utils as dbutils
from apiserver.apierrors import errors
from apiserver.bll.queue import QueueBLL
from apiserver.bll.organization import OrgBLL, Tags
from apiserver.bll.project import ProjectBLL
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.model import Model
from apiserver.database.model.project import Project
from apiserver.database.model.task.metrics import EventStats, MetricEventStats
from apiserver.database.model.task.output import Output
from apiserver.database.model.task.task import (
Task,
TaskStatus,
TaskStatusMessage,
TaskSystemTags,
ArtifactModes,
external_task_types,
)
from apiserver.database.model import EntityVisibility
from apiserver.database.utils import get_company_or_none_constraint, id as create_id
from apiserver.es_factory import es_factory
from apiserver.service_repo import APICall
from apiserver.services.utils import validate_tags
from apiserver.timing_context import TimingContext
from apiserver.utilities.parameter_key_escaper import ParameterKeyEscaper
from .artifacts import artifacts_prepare_for_save
from .param_utils import params_prepare_for_save
from .utils import ChangeStatusRequest, validate_status_change, update_project_time
log = config.logger(__file__)
org_bll = OrgBLL()
queue_bll = QueueBLL()
project_bll = ProjectBLL()
class TaskBLL:
def __init__(self, events_es=None):
self.events_es = (
events_es if events_es is not None else es_factory.connect("events")
)
@classmethod
def get_types(cls, company, project_ids: Optional[Sequence]) -> set:
"""
Return the list of unique task types used by company and public tasks
If project ids passed then only tasks from these projects are considered
"""
query = get_company_or_none_constraint(company)
if project_ids:
query &= Q(project__in=project_ids)
res = Task.objects(query).distinct(field="type")
return set(res).intersection(external_task_types)
@staticmethod
def get_task_with_access(
task_id, company_id, only=None, allow_public=False, requires_write_access=False
) -> Task:
"""
Gets a task that has a required write access
:except errors.bad_request.InvalidTaskId: if the task is not found
:except errors.forbidden.NoWritePermission: if write_access was required and the task cannot be modified
"""
with translate_errors_context():
query = dict(id=task_id, company=company_id)
with TimingContext("mongo", "task_with_access"):
if requires_write_access:
task = Task.get_for_writing(_only=only, **query)
else:
task = Task.get(_only=only, **query, include_public=allow_public)
if not task:
raise errors.bad_request.InvalidTaskId(**query)
return task
@staticmethod
def get_by_id(
company_id, task_id, required_status=None, only_fields=None, allow_public=False,
):
if only_fields:
if isinstance(only_fields, string_types):
only_fields = [only_fields]
else:
only_fields = list(only_fields)
only_fields = only_fields + ["status"]
with TimingContext("mongo", "task_by_id_all"):
tasks = Task.get_many(
company=company_id,
query=Q(id=task_id),
allow_public=allow_public,
override_projection=only_fields,
return_dicts=False,
)
task = None if not tasks else tasks[0]
if not task:
raise errors.bad_request.InvalidTaskId(id=task_id)
if required_status and not task.status == required_status:
raise errors.bad_request.InvalidTaskStatus(expected=required_status)
return task
@staticmethod
def assert_exists(
company_id, task_ids, only=None, allow_public=False, return_tasks=True
) -> Optional[Sequence[Task]]:
task_ids = [task_ids] if isinstance(task_ids, six.string_types) else task_ids
with translate_errors_context(), TimingContext("mongo", "task_exists"):
ids = set(task_ids)
q = Task.get_many(
company=company_id,
query=Q(id__in=ids),
allow_public=allow_public,
return_dicts=False,
)
if only:
# Make sure to reset fields filters (some fields are excluded by default) since this
# is an internal call and specific fields were requested.
q = q.all_fields().only(*only)
if q.count() != len(ids):
raise errors.bad_request.InvalidTaskId(ids=task_ids)
if return_tasks:
return list(q)
@staticmethod
def create(call: APICall, fields: dict):
identity = call.identity
now = datetime.utcnow()
return Task(
id=create_id(),
user=identity.user,
company=identity.company,
created=now,
last_update=now,
last_change=now,
**fields,
)
@staticmethod
def validate_execution_model(task, allow_only_public=False):
if not task.execution or not task.execution.model:
return
company = None if allow_only_public else task.company
model_id = task.execution.model
model = Model.objects(
Q(id=model_id) & get_company_or_none_constraint(company)
).first()
if not model:
raise errors.bad_request.InvalidModelId(model=model_id)
return model
@classmethod
def clone_task(
cls,
company_id: str,
user_id: str,
task_id: str,
name: Optional[str] = None,
comment: Optional[str] = None,
parent: Optional[str] = None,
project: Optional[str] = None,
tags: Optional[Sequence[str]] = None,
system_tags: Optional[Sequence[str]] = None,
hyperparams: Optional[dict] = None,
configuration: Optional[dict] = None,
execution_overrides: Optional[dict] = None,
validate_references: bool = False,
new_project_name: str = None,
) -> Tuple[Task, dict]:
validate_tags(tags, system_tags)
params_dict = {
field: value
for field, value in (
("hyperparams", hyperparams),
("configuration", configuration),
)
if value is not None
}
task = cls.get_by_id(company_id=company_id, task_id=task_id, allow_public=True)
execution_dict = task.execution.to_proper_dict() if task.execution else {}
execution_model_overriden = False
if execution_overrides:
execution_model_overriden = execution_overrides.get("model") is not None
artifacts_prepare_for_save({"execution": execution_overrides})
params_dict["execution"] = {}
for legacy_param in ("parameters", "configuration"):
legacy_value = execution_overrides.pop(legacy_param, None)
if legacy_value is not None:
params_dict["execution"] = legacy_value
execution_dict.update(execution_overrides)
params_prepare_for_save(params_dict, previous_task=task)
artifacts = execution_dict.get("artifacts")
if artifacts:
execution_dict["artifacts"] = {
k: a
for k, a in artifacts.items()
if a.get("mode") != ArtifactModes.output
}
execution_dict.pop("queue", None)
new_project_data = None
if not project and new_project_name:
# Use a project with the provided name, or create a new project
project = ProjectBLL.find_or_create(
project_name=new_project_name,
user=user_id,
company=company_id,
description="Auto-generated while cloning",
)
new_project_data = {"id": project, "name": new_project_name}
now = datetime.utcnow()
def clean_system_tags(input_tags: Sequence[str]) -> Sequence[str]:
if not input_tags:
return input_tags
return [
tag
for tag in input_tags
if tag not in [TaskSystemTags.development, EntityVisibility.archived.value]
]
with TimingContext("mongo", "clone task"):
new_task = Task(
id=create_id(),
user=user_id,
company=company_id,
created=now,
last_update=now,
last_change=now,
name=name or task.name,
comment=comment or task.comment,
parent=parent or task.parent,
project=project or task.project,
tags=tags or task.tags,
system_tags=system_tags or clean_system_tags(task.system_tags),
type=task.type,
script=task.script,
output=Output(destination=task.output.destination)
if task.output
else None,
execution=execution_dict,
configuration=params_dict.get("configuration") or task.configuration,
hyperparams=params_dict.get("hyperparams") or task.hyperparams,
)
cls.validate(
new_task,
validate_model=validate_references or execution_model_overriden,
validate_parent=validate_references or parent,
validate_project=validate_references or project,
)
new_task.save()
if task.project == new_task.project:
updated_tags = tags
updated_system_tags = system_tags
else:
updated_tags = new_task.tags
updated_system_tags = new_task.system_tags
org_bll.update_tags(
company_id,
Tags.Task,
project=new_task.project,
tags=updated_tags,
system_tags=updated_system_tags,
)
update_project_time(new_task.project)
return new_task, new_project_data
@classmethod
def validate(
cls,
task: Task,
validate_model=True,
validate_parent=True,
validate_project=True,
):
"""
Validate task properties according to the flag
Task project is always checked for being writable
in order to disable the modification of public projects
"""
if (
validate_parent
and task.parent
and not Task.get(
company=task.company, id=task.parent, _only=("id",), include_public=True
)
):
raise errors.bad_request.InvalidTaskId("invalid parent", parent=task.parent)
if task.project:
project = Project.get_for_writing(company=task.company, id=task.project)
if validate_project and not project:
raise errors.bad_request.InvalidProjectId(id=task.project)
if validate_model:
cls.validate_execution_model(task)
@staticmethod
def get_unique_metric_variants(company_id, project_ids=None):
pipeline = [
{
"$match": dict(
company={"$in": [None, "", company_id]},
**({"project": {"$in": project_ids}} if project_ids else {}),
)
},
{"$project": {"metrics": {"$objectToArray": "$last_metrics"}}},
{"$unwind": "$metrics"},
{
"$project": {
"metric": "$metrics.k",
"variants": {"$objectToArray": "$metrics.v"},
}
},
{"$unwind": "$variants"},
{
"$group": {
"_id": {
"metric": "$variants.v.metric",
"variant": "$variants.v.variant",
},
"metrics": {
"$addToSet": {
"metric": "$variants.v.metric",
"metric_hash": "$metric",
"variant": "$variants.v.variant",
"variant_hash": "$variants.k",
}
},
}
},
{"$sort": OrderedDict({"_id.metric": 1, "_id.variant": 1})},
]
with translate_errors_context():
result = Task.aggregate(pipeline)
return [r["metrics"][0] for r in result]
@staticmethod
def set_last_update(
task_ids: Collection[str],
company_id: str,
last_update: datetime,
**extra_updates,
):
tasks = Task.objects(id__in=task_ids, company=company_id).only(
"status", "started"
)
for task in tasks:
updates = extra_updates
if task.status == TaskStatus.in_progress and task.started:
updates = {
"active_duration": (
datetime.utcnow() - task.started
).total_seconds(),
**extra_updates,
}
Task.objects(id=task.id, company=company_id).update(
upsert=False,
last_update=last_update,
last_change=last_update,
**updates,
)
@staticmethod
def update_statistics(
task_id: str,
company_id: str,
last_update: datetime = None,
last_iteration: int = None,
last_iteration_max: int = None,
last_scalar_values: Sequence[Tuple[Tuple[str, ...], Any]] = None,
last_events: Dict[str, Dict[str, dict]] = None,
**extra_updates,
):
"""
Update task statistics
:param task_id: Task's ID.
:param company_id: Task's company ID.
:param last_update: Last update time. If not provided, defaults to datetime.utcnow().
:param last_iteration: Last reported iteration. Use this to set a value regardless of current
task's last iteration value.
:param last_iteration_max: Last reported iteration. Use this to conditionally set a value only
if the current task's last iteration value is smaller than the provided value.
:param last_scalar_values: Last reported metrics summary for scalar events (value, metric, variant).
:param last_events: Last reported metrics summary (value, metric, event type).
:param extra_updates: Extra task updates to include in this update call.
:return:
"""
last_update = last_update or datetime.utcnow()
if last_iteration is not None:
extra_updates.update(last_iteration=last_iteration)
elif last_iteration_max is not None:
extra_updates.update(max__last_iteration=last_iteration_max)
if last_scalar_values is not None:
def op_path(op, *path):
return "__".join((op, "last_metrics") + path)
for path, value in last_scalar_values:
if path[-1] == "min_value":
extra_updates[op_path("min", *path[:-1], "min_value")] = value
elif path[-1] == "max_value":
extra_updates[op_path("max", *path[:-1], "max_value")] = value
else:
extra_updates[op_path("set", *path)] = value
if last_events is not None:
def events_per_type(metric_data: Dict[str, dict]) -> Dict[str, EventStats]:
return {
event_type: EventStats(last_update=event["timestamp"])
for event_type, event in metric_data.items()
}
metric_stats = {
dbutils.hash_field_name(metric_key): MetricEventStats(
metric=metric_key, event_stats_by_type=events_per_type(metric_data)
)
for metric_key, metric_data in last_events.items()
}
extra_updates["metric_stats"] = metric_stats
TaskBLL.set_last_update(
task_ids=[task_id],
company_id=company_id,
last_update=last_update,
**extra_updates,
)
@classmethod
def model_set_ready(
cls,
model_id: str,
company_id: str,
publish_task: bool,
force_publish_task: bool = False,
) -> tuple:
with translate_errors_context():
query = dict(id=model_id, company=company_id)
model = Model.objects(**query).first()
if not model:
raise errors.bad_request.InvalidModelId(**query)
elif model.ready:
raise errors.bad_request.ModelIsReady(**query)
published_task_data = {}
if model.task and publish_task:
task = (
Task.objects(id=model.task, company=company_id)
.only("id", "status")
.first()
)
if task and task.status != TaskStatus.published:
published_task_data["data"] = cls.publish_task(
task_id=model.task,
company_id=company_id,
publish_model=False,
force=force_publish_task,
)
published_task_data["id"] = model.task
updated = model.update(upsert=False, ready=True)
return updated, published_task_data
@classmethod
def publish_task(
cls,
task_id: str,
company_id: str,
publish_model: bool,
force: bool,
status_reason: str = "",
status_message: str = "",
) -> dict:
task = cls.get_task_with_access(
task_id, company_id=company_id, requires_write_access=True
)
if not force:
validate_status_change(task.status, TaskStatus.published)
previous_task_status = task.status
output = task.output or Output()
publish_failed = False
try:
# set state to publishing
task.status = TaskStatus.publishing
task.save()
# publish task models
if task.output.model and publish_model:
output_model = (
Model.objects(id=task.output.model)
.only("id", "task", "ready")
.first()
)
if output_model and not output_model.ready:
cls.model_set_ready(
model_id=task.output.model,
company_id=company_id,
publish_task=False,
)
# set task status to published, and update (or set) it's new output (view and models)
return ChangeStatusRequest(
task=task,
new_status=TaskStatus.published,
force=force,
status_reason=status_reason,
status_message=status_message,
).execute(published=datetime.utcnow(), output=output)
except Exception as ex:
publish_failed = True
raise ex
finally:
if publish_failed:
task.status = previous_task_status
task.save()
@classmethod
def stop_task(
cls,
task_id: str,
company_id: str,
user_name: str,
status_reason: str,
force: bool,
) -> dict:
"""
Stop a running task. Requires task status 'in_progress' and
execution_progress 'running', or force=True. Development task or
task that has no associated worker is stopped immediately.
For a non-development task with worker only the status message
is set to 'stopping' to allow the worker to stop the task and report by itself
:return: updated task fields
"""
task = cls.get_task_with_access(
task_id,
company_id=company_id,
only=(
"status",
"project",
"tags",
"system_tags",
"last_worker",
"last_update",
),
requires_write_access=True,
)
def is_run_by_worker(t: Task) -> bool:
"""Checks if there is an active worker running the task"""
update_timeout = config.get("apiserver.workers.task_update_timeout", 600)
return (
t.last_worker
and t.last_update
and (datetime.utcnow() - t.last_update).total_seconds() < update_timeout
)
if TaskSystemTags.development in task.system_tags or not is_run_by_worker(task):
new_status = TaskStatus.stopped
status_message = f"Stopped by {user_name}"
else:
new_status = task.status
status_message = TaskStatusMessage.stopping
return ChangeStatusRequest(
task=task,
new_status=new_status,
status_reason=status_reason,
status_message=status_message,
force=force,
).execute()
@staticmethod
def get_aggregated_project_parameters(
company_id,
project_ids: Sequence[str] = None,
page: int = 0,
page_size: int = 500,
) -> Tuple[int, int, Sequence[dict]]:
page = max(0, page)
page_size = max(1, page_size)
pipeline = [
{
"$match": {
"company": {"$in": [None, "", company_id]},
"hyperparams": {"$exists": True, "$gt": {}},
**({"project": {"$in": project_ids}} if project_ids else {}),
}
},
{"$project": {"sections": {"$objectToArray": "$hyperparams"}}},
{"$unwind": "$sections"},
{
"$project": {
"section": "$sections.k",
"names": {"$objectToArray": "$sections.v"},
}
},
{"$unwind": "$names"},
{"$group": {"_id": {"section": "$section", "name": "$names.k"}}},
{"$sort": OrderedDict({"_id.section": 1, "_id.name": 1})},
{
"$group": {
"_id": 1,
"total": {"$sum": 1},
"results": {"$push": "$$ROOT"},
}
},
{
"$project": {
"total": 1,
"results": {"$slice": ["$results", page * page_size, page_size]},
}
},
]
with translate_errors_context():
result = next(Task.aggregate(pipeline), None)
total = 0
remaining = 0
results = []
if result:
total = int(result.get("total", -1))
results = [
{
"section": ParameterKeyEscaper.unescape(
dpath.get(r, "_id/section")
),
"name": ParameterKeyEscaper.unescape(dpath.get(r, "_id/name")),
}
for r in result.get("results", [])
]
remaining = max(0, total - (len(results) + page * page_size))
return total, remaining, results
@classmethod
def dequeue_and_change_status(
cls, task: Task, company_id: str, status_message: str, status_reason: str,
):
cls.dequeue(task, company_id)
return ChangeStatusRequest(
task=task,
new_status=TaskStatus.created,
status_reason=status_reason,
status_message=status_message,
).execute(unset__execution__queue=1)
@classmethod
def dequeue(cls, task: Task, company_id: str, silent_fail=False):
"""
Dequeue the task from the queue
:param task: task to dequeue
:param company_id: task's company ID.
:param silent_fail: do not throw exceptions. APIError is still thrown
:raise errors.bad_request.InvalidTaskId: if the task's status is not queued
:raise errors.bad_request.MissingRequiredFields: if the task is not queued
:raise APIError or errors.server_error.TransactionError: if internal call to queues.remove_task fails
:return: the result of queues.remove_task call. None in case of silent failure
"""
if task.status not in (TaskStatus.queued,):
if silent_fail:
return
raise errors.bad_request.InvalidTaskId(
status=task.status, expected=TaskStatus.queued
)
if not task.execution or not task.execution.queue:
if silent_fail:
return
raise errors.bad_request.MissingRequiredFields(
"task has no queue value", field="execution.queue"
)
return {
"removed": queue_bll.remove_task(
company_id=company_id, queue_id=task.execution.queue, task_id=task.id
)
}

View File

@@ -1,16 +1,16 @@
from datetime import datetime
from typing import TypeVar, Callable, Tuple, Sequence
from typing import TypeVar, Callable, Tuple, Sequence, Union
import attr
import six
from apierrors import errors
from database.errors import translate_errors_context
from database.model.project import Project
from database.model.task.task import Task, TaskStatus
from database.utils import get_options
from timing_context import TimingContext
from utilities.attrs import typed_attrs
from apiserver.apierrors import errors
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.project import Project
from apiserver.database.model.task.task import Task, TaskStatus, TaskSystemTags
from apiserver.database.utils import get_options
from apiserver.timing_context import TimingContext
from apiserver.utilities.attrs import typed_attrs
valid_statuses = get_options(TaskStatus)
@@ -25,9 +25,10 @@ class ChangeStatusRequest(object):
status_message = attr.ib(type=six.string_types, default="")
force = attr.ib(type=bool, default=False)
allow_same_state_transition = attr.ib(type=bool, default=True)
current_status_override = attr.ib(default=None)
def execute(self, **kwargs):
current_status = self.task.status
current_status = self.current_status_override or self.task.status
project_id = self.task.project
# Verify new status is allowed from current status (will throw exception if not valid)
@@ -42,8 +43,12 @@ class ChangeStatusRequest(object):
status_message=self.status_message,
status_changed=now,
last_update=now,
last_change=now,
)
if self.new_status == TaskStatus.queued:
fields["pull__system_tags"] = TaskSystemTags.development
def safe_mongoengine_key(key):
return f"__{key}" if key in control else key
@@ -66,6 +71,10 @@ class ChangeStatusRequest(object):
)
update_project_time(project_id)
# make sure that _raw_ queries are not returned back to the client
fields.pop("__raw__", None)
return dict(updated=updated, fields=fields)
def validate_transition(self, current_status):
@@ -95,8 +104,14 @@ def validate_status_change(current_status, new_status):
state_machine = {
TaskStatus.created: {TaskStatus.in_progress},
TaskStatus.in_progress: {TaskStatus.stopped, TaskStatus.failed, TaskStatus.created},
TaskStatus.created: {TaskStatus.queued, TaskStatus.in_progress},
TaskStatus.queued: {TaskStatus.created, TaskStatus.in_progress},
TaskStatus.in_progress: {
TaskStatus.stopped,
TaskStatus.failed,
TaskStatus.created,
TaskStatus.completed,
},
TaskStatus.stopped: {
TaskStatus.closed,
TaskStatus.created,
@@ -104,6 +119,7 @@ state_machine = {
TaskStatus.in_progress,
TaskStatus.published,
TaskStatus.publishing,
TaskStatus.completed,
},
TaskStatus.closed: {
TaskStatus.created,
@@ -115,6 +131,11 @@ state_machine = {
TaskStatus.failed: {TaskStatus.created, TaskStatus.stopped, TaskStatus.published},
TaskStatus.publishing: {TaskStatus.published},
TaskStatus.published: set(),
TaskStatus.completed: {
TaskStatus.published,
TaskStatus.in_progress,
TaskStatus.created,
},
}
@@ -124,15 +145,22 @@ def get_possible_status_changes(current_status):
:return possible states from current state
"""
possible = state_machine.get(current_status)
assert (
possible is not None
), f"Current status {current_status} not supported by state machine"
if possible is None:
raise errors.server_error.InternalError(
f"Current status {current_status} not supported by state machine"
)
return possible
def update_project_time(project_id):
if project_id:
Project.objects(id=project_id).update(last_update=datetime.utcnow())
def update_project_time(project_ids: Union[str, Sequence[str]]):
if not project_ids:
return
if isinstance(project_ids, str):
project_ids = [project_ids]
return Project.objects(id__in=project_ids).update(last_update=datetime.utcnow())
T = TypeVar("T")
@@ -149,3 +177,34 @@ def split_by(
[item for cond, item in applied if cond],
[item for cond, item in applied if not cond],
)
def get_task_for_update(
company_id: str, task_id: str, allow_all_statuses: bool = False, force: bool = False
) -> Task:
"""
Loads only task id and return the task only if it is updatable (status == 'created')
"""
task = Task.get_for_writing(company=company_id, id=task_id, _only=("id", "status"))
if not task:
raise errors.bad_request.InvalidTaskId(id=task_id)
if allow_all_statuses:
return task
allowed_statuses = (
[TaskStatus.created, TaskStatus.in_progress] if force else [TaskStatus.created]
)
if task.status not in allowed_statuses:
raise errors.bad_request.InvalidTaskStatus(
expected=TaskStatus.created, status=task.status
)
return task
def update_task(task: Task, update_cmds: dict, set_last_update: bool = True):
now = datetime.utcnow()
last_updates = dict(last_change=now)
if set_last_update:
last_updates.update(last_update=now)
return task.update(**update_cmds, **last_updates)

View File

@@ -1,7 +1,7 @@
from apierrors import errors
from apimodels.users import CreateRequest
from database.errors import translate_errors_context
from database.model.user import User
from apiserver.apierrors import errors
from apiserver.apimodels.users import CreateRequest
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.user import User
class UserBLL:

117
apiserver/bll/util.py Normal file
View File

@@ -0,0 +1,117 @@
import functools
import itertools
from concurrent.futures.thread import ThreadPoolExecutor
from operator import itemgetter
from typing import Sequence, Optional, Callable, Tuple, Dict, Any, Set, Iterable
from boltons import iterutils
from apiserver.database.model import AttributedDocument
from apiserver.database.model.settings import Settings
def extract_properties_to_lists(
key_names: Sequence[str],
data: Sequence[dict],
extract_func: Optional[Callable[[dict], Tuple]] = None,
) -> dict:
"""
Given a list of dictionaries and names of dictionary keys
builds a dictionary with the requested keys and values lists
:param key_names: names of the keys in the resulting dictionary
:param data: sequence of dictionaries to extract values from
:param extract_func: the optional callable that extracts properties
from a dictionary and put them in a tuple in the order corresponding to
key_names. If not specified then properties are extracted according to key_names
"""
value_sequences = zip(*map(extract_func or itemgetter(*key_names), data))
return dict(zip(key_names, map(list, value_sequences)))
class SetFieldsResolver:
"""
The class receives set fields dictionary
and for the set fields that require 'min' or 'max'
operation replace them with a simple set in case the
DB document does not have these fields set
"""
SET_MODIFIERS = ("min", "max")
def __init__(self, set_fields: Dict[str, Any]):
self.orig_fields = {}
self.fields = {}
self.add_fields(**set_fields)
def add_fields(self, **set_fields: Any):
self.orig_fields.update(set_fields)
self.fields.update(
{
f: fname
for f, modifier, dunder, fname in (
(f,) + f.partition("__") for f in set_fields.keys()
)
if dunder and modifier in self.SET_MODIFIERS
}
)
def _get_updated_name(self, doc: AttributedDocument, name: str) -> str:
if name in self.fields and doc.get_field_value(self.fields[name]) is None:
return self.fields[name]
return name
def get_fields(self, doc: AttributedDocument):
"""
For the given document return the set fields instructions
with min/max operations replaced with a single set in case
the document does not have the field set
"""
return {
self._get_updated_name(doc, name): value
for name, value in self.orig_fields.items()
}
def get_names(self) -> Set[str]:
"""
Returns the names of the fields that had min/max modifiers
in the format suitable for projection (dot separated)
"""
return set(name.replace("__", ".") for name in self.fields.values())
@functools.lru_cache()
def get_server_uuid() -> Optional[str]:
return Settings.get_by_key("server.uuid")
def parallel_chunked_decorator(func: Callable = None, chunk_size: int = 100):
"""
Decorates a method for parallel chunked execution. The method should have
one positional parameter (that is used for breaking into chunks)
and arbitrary number of keyword params. The return value should be iterable
The results are concatenated in the same order as the passed params
"""
if func is None:
return functools.partial(parallel_chunked_decorator, chunk_size=chunk_size)
@functools.wraps(func)
def wrapper(self, iterable: Iterable, **kwargs):
assert iterutils.is_collection(
iterable
), "The positional parameter should be an iterable for breaking into chunks"
func_with_params = functools.partial(func, self, **kwargs)
with ThreadPoolExecutor() as pool:
return list(
itertools.chain.from_iterable(
filter(
None,
pool.map(
func_with_params,
iterutils.chunked_iter(iterable, chunk_size),
),
)
),
)
return wrapper

View File

@@ -0,0 +1,439 @@
import itertools
from datetime import datetime, timedelta
from typing import Sequence, Set, Optional
import attr
import elasticsearch.helpers
from apiserver.es_factory import es_factory
from apiserver.apierrors import APIError
from apiserver.apierrors.errors import bad_request, server_error
from apiserver.apimodels.workers import (
DEFAULT_TIMEOUT,
IdNameEntry,
WorkerEntry,
StatusReportRequest,
WorkerResponseEntry,
QueueEntry,
MachineStats,
)
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.database.model.auth import User
from apiserver.database.model.company import Company
from apiserver.database.model.project import Project
from apiserver.database.model.queue import Queue
from apiserver.database.model.task.task import Task
from apiserver.redis_manager import redman
from apiserver.timing_context import TimingContext
from apiserver.tools import safe_get
from .stats import WorkerStats
log = config.logger(__file__)
class WorkerBLL:
def __init__(self, es=None, redis=None):
self.es_client = es or es_factory.connect("workers")
self.redis = redis or redman.connection("workers")
self._stats = WorkerStats(self.es_client)
@property
def stats(self) -> WorkerStats:
return self._stats
def register_worker(
self,
company_id: str,
user_id: str,
worker: str,
ip: str = "",
queues: Sequence[str] = None,
timeout: int = 0,
tags: Sequence[str] = None,
) -> WorkerEntry:
"""
Register a worker
:param company_id: worker's company ID
:param user_id: user ID under which this worker is running
:param worker: worker ID
:param ip: the real ip of the worker
:param queues: queues reported as being monitored by the worker
:param timeout: registration expiration timeout in seconds
:param tags: a list of tags for this worker
:raise bad_request.InvalidUserId: in case the calling user or company does not exist
:return: worker entry instance
"""
key = WorkerBLL._get_worker_key(company_id, user_id, worker)
timeout = timeout or DEFAULT_TIMEOUT
queues = queues or []
with translate_errors_context():
query = dict(id=user_id, company=company_id)
user = User.objects(**query).only("id", "name").first()
if not user:
raise bad_request.InvalidUserId(**query)
company = Company.objects(id=company_id).only("id", "name").first()
if not company:
raise server_error.InternalError("invalid company", company=company_id)
queue_objs = Queue.objects(company=company_id, id__in=queues).only("id")
if len(queue_objs) < len(queues):
invalid = set(queues).difference(q.id for q in queue_objs)
raise bad_request.InvalidQueueId(ids=invalid)
now = datetime.utcnow()
entry = WorkerEntry(
key=key,
id=worker,
user=user.to_proper_dict(),
company=company.to_proper_dict(),
ip=ip,
queues=queues,
register_time=now,
register_timeout=timeout,
last_activity_time=now,
tags=tags,
)
self.redis.setex(key, timedelta(seconds=timeout), entry.to_json())
return entry
def unregister_worker(self, company_id: str, user_id: str, worker: str) -> None:
"""
Unregister a worker
:param company_id: worker's company ID
:param user_id: user ID under which this worker is running
:param worker: worker ID
:raise bad_request.WorkerNotRegistered: the worker was not previously registered
"""
with TimingContext("redis", "workers_unregister"):
res = self.redis.delete(
company_id, self._get_worker_key(company_id, user_id, worker)
)
if not res:
raise bad_request.WorkerNotRegistered(worker=worker)
def status_report(
self, company_id: str, user_id: str, ip: str, report: StatusReportRequest, tags: Sequence[str] = None,
) -> None:
"""
Write worker status report
:param company_id: worker's company ID
:param user_id: user_id ID under which this worker is running
:param ip: worker IP
:param report: the report itself
:param tags: tags for this worker
:raise bad_request.InvalidTaskId: the reported task was not found
:return: worker entry instance
"""
entry = self._get_worker(company_id, user_id, report.worker)
try:
entry.ip = ip
now = datetime.utcnow()
entry.last_activity_time = now
if tags is not None:
entry.tags = tags
if report.machine_stats:
self._log_stats_to_es(
company_id=company_id,
company_name=entry.company.name,
worker=report.worker,
timestamp=report.timestamp,
task=report.task,
machine_stats=report.machine_stats,
)
entry.queue = report.queue
if report.queues:
entry.queues = report.queues
if not report.task:
entry.task = None
entry.project = None
else:
with translate_errors_context():
query = dict(id=report.task, company=company_id)
update = dict(
last_worker=report.worker,
last_worker_report=now,
last_update=now,
last_change=now,
)
# modify(new=True, ...) returns the modified object
task = Task.objects(**query).modify(new=True, **update)
if not task:
raise bad_request.InvalidTaskId(**query)
entry.task = IdNameEntry(id=task.id, name=task.name)
entry.project = None
if task.project:
project = Project.objects(id=task.project).only("name").first()
if project:
entry.project = IdNameEntry(id=project.id, name=project.name)
entry.last_report_time = now
except APIError:
raise
except Exception as e:
msg = "Failed processing worker status report"
log.exception(msg)
raise server_error.DataError(msg, err=e.args[0])
finally:
self._save_worker(entry)
def get_all(
self, company_id: str, last_seen: Optional[int] = None
) -> Sequence[WorkerEntry]:
"""
Get all the company workers that were active during the last_seen period
:param company_id: worker's company id
:param last_seen: period in seconds to check. Min value is 1 second
:return:
"""
try:
workers = self._get(company_id)
except Exception as e:
raise server_error.DataError("failed loading worker entries", err=e.args[0])
if last_seen:
ref_time = datetime.utcnow() - timedelta(seconds=max(1, last_seen))
workers = [
w
for w in workers
if w.last_activity_time.replace(tzinfo=None) >= ref_time
]
return workers
def get_all_with_projection(
self, company_id: str, last_seen: int
) -> Sequence[WorkerResponseEntry]:
helpers = list(
map(
WorkerConversionHelper.from_worker_entry,
self.get_all(company_id=company_id, last_seen=last_seen),
)
)
task_ids = set(filter(None, (helper.task_id for helper in helpers)))
all_queues = set(
itertools.chain.from_iterable(helper.queue_ids for helper in helpers)
)
queues_info = {}
if all_queues:
projection = [
{"$match": {"_id": {"$in": list(all_queues)}}},
{
"$project": {
"name": 1,
"next_entry": {"$arrayElemAt": ["$entries", 0]},
"num_entries": {"$size": "$entries"},
}
},
]
queues_info = {
res["_id"]: res for res in Queue.objects.aggregate(projection)
}
task_ids = task_ids.union(
filter(
None,
(
safe_get(info, "next_entry/task")
for info in queues_info.values()
),
)
)
tasks_info = {}
if task_ids:
tasks_info = {
task.id: task
for task in Task.objects(id__in=task_ids).only(
"name", "started", "last_iteration"
)
}
def update_queue_entries(*entries):
for entry in entries:
if not entry:
continue
info = queues_info.get(entry.id, None)
if not info:
continue
entry.name = info.get("name", None)
entry.num_tasks = info.get("num_entries", 0)
task_id = safe_get(info, "next_entry/task")
if task_id:
task = tasks_info.get(task_id, None)
entry.next_task = IdNameEntry(
id=task_id, name=task.name if task else None
)
for helper in helpers:
worker = helper.worker
if helper.task_id:
task = tasks_info.get(helper.task_id, None)
if task:
worker.task.running_time = (
int((datetime.utcnow() - task.started).total_seconds() * 1000)
if task.started
else 0
)
worker.task.last_iteration = task.last_iteration
update_queue_entries(worker.queue)
if worker.queues:
update_queue_entries(*worker.queues)
return [helper.worker for helper in helpers]
@staticmethod
def _get_worker_key(company: str, user: str, worker_id: str) -> str:
"""Build redis key from company, user and worker_id"""
return f"worker_{company}_{user}_{worker_id}"
def _get_worker(self, company_id: str, user_id: str, worker: str) -> WorkerEntry:
"""
Get a worker entry for the provided worker ID. The entry is loaded from Redis
if it exists (i.e. worker has already been registered), otherwise the worker
is registered and its entry stored into Redis).
:param company_id: worker's company ID
:param user_id: user ID under which this worker is running
:param worker: worker ID
:raise bad_request.InvalidWorkerId: in case the worker id was not found
:return: worker entry instance
"""
key = self._get_worker_key(company_id, user_id, worker)
with TimingContext("redis", "get_worker"):
data = self.redis.get(key)
if data:
try:
entry = WorkerEntry.from_json(data)
if not entry.key:
entry.key = key
self._save_worker(entry)
return entry
except Exception as e:
msg = "Failed parsing worker entry"
log.exception(msg)
raise server_error.DataError(msg, err=e.args[0])
# Failed loading worker from Redis
if config.get("apiserver.workers.auto_register", False):
try:
return self.register_worker(company_id, user_id, worker)
except Exception:
log.error(
"Failed auto registration of {} for company {}".format(
worker, company_id
)
)
raise bad_request.InvalidWorkerId(worker=worker)
def _save_worker(self, entry: WorkerEntry) -> None:
"""Save worker entry in Redis"""
try:
self.redis.setex(
entry.key, timedelta(seconds=entry.register_timeout), entry.to_json()
)
except Exception:
msg = "Failed saving worker entry"
log.exception(msg)
def _get(
self, company: str, user: str = "*", worker_id: str = "*"
) -> Sequence[WorkerEntry]:
"""Get worker entries matching the company and user, worker patterns"""
match = self._get_worker_key(company, user, worker_id)
with TimingContext("redis", "workers_get_all"):
res = self.redis.scan_iter(match)
return [WorkerEntry.from_json(self.redis.get(r)) for r in res]
@staticmethod
def _get_es_index_suffix():
"""Get the index name suffix for storing current month data"""
return datetime.utcnow().strftime("%Y-%m")
def _log_stats_to_es(
self,
company_id: str,
company_name: str,
worker: str,
timestamp: int,
task: str,
machine_stats: MachineStats,
) -> bool:
"""
Actually writing the worker statistics to Elastic
:return: True if successful, False otherwise
"""
es_index = (
f"{self._stats.worker_stats_prefix_for_company(company_id)}"
f"{self._get_es_index_suffix()}"
)
def make_doc(category, metric, variant, value) -> dict:
return dict(
_index=es_index,
_source=dict(
timestamp=timestamp,
worker=worker,
company=company_name,
task=task,
category=category,
metric=metric,
variant=variant,
value=float(value),
),
)
actions = []
for field, value in machine_stats.to_struct().items():
if not value:
continue
category = field.partition("_")[0]
metric = field
if not isinstance(value, (list, tuple)):
actions.append(make_doc(category, metric, "total", value))
else:
actions.extend(
make_doc(category, metric, str(i), val)
for i, val in enumerate(value)
)
es_res = elasticsearch.helpers.bulk(self.es_client, actions)
added, errors = es_res[:2]
return (added == len(actions)) and not errors
@attr.s(auto_attribs=True)
class WorkerConversionHelper:
worker: WorkerResponseEntry
task_id: str
queue_ids: Set[str]
@classmethod
def from_worker_entry(cls, worker: WorkerEntry):
data = worker.to_struct()
queue = data.pop("queue", None) or None
queue_ids = set(data.pop("queues", []))
queues = [QueueEntry(id=id) for id in queue_ids]
if queue:
queue = next((q for q in queues if q.id == queue), None)
return cls(
worker=WorkerResponseEntry(queues=queues, queue=queue, **data),
task_id=worker.task.id if worker.task else None,
queue_ids=queue_ids,
)

View File

@@ -0,0 +1,243 @@
from operator import attrgetter
from typing import Optional, Sequence
from boltons.iterutils import bucketize
from apiserver.apierrors.errors import bad_request
from apiserver.apimodels.workers import AggregationType, GetStatsRequest, StatItem
from apiserver.bll.query import Builder as QueryBuilder
from apiserver.config_repo import config
from apiserver.database.errors import translate_errors_context
from apiserver.timing_context import TimingContext
log = config.logger(__file__)
class WorkerStats:
def __init__(self, es):
self.es = es
@staticmethod
def worker_stats_prefix_for_company(company_id: str) -> str:
"""Returns the es index prefix for the company"""
return f"worker_stats_{company_id}_"
def _search_company_stats(self, company_id: str, es_req: dict) -> dict:
return self.es.search(
index=f"{self.worker_stats_prefix_for_company(company_id)}*",
body=es_req,
)
def get_worker_stats_keys(
self, company_id: str, worker_ids: Optional[Sequence[str]]
) -> dict:
"""
Get dictionary of metric types grouped by categories
:param company_id: company id
:param worker_ids: optional list of workers to get metric types from.
If not specified them metrics for all the company workers returned
:return:
"""
es_req = {
"size": 0,
"aggs": {
"categories": {
"terms": {"field": "category"},
"aggs": {"metrics": {"terms": {"field": "metric"}}},
}
},
}
if worker_ids:
es_req["query"] = QueryBuilder.terms("worker", worker_ids)
res = self._search_company_stats(company_id, es_req)
if not res["hits"]["total"]["value"]:
raise bad_request.WorkerStatsNotFound(
f"No statistic metrics found for the company {company_id} and workers {worker_ids}"
)
return {
category["key"]: [
metric["key"] for metric in category["metrics"]["buckets"]
]
for category in res["aggregations"]["categories"]["buckets"]
}
def get_worker_stats(self, company_id: str, request: GetStatsRequest) -> dict:
"""
Get statistics for company workers metrics in the specified time range
Returned as date histograms for different aggregation types
grouped by worker, metric type (and optionally metric variant)
Buckets with no metrics are not returned
Note: all the statistics are retrieved as one ES query
"""
if request.from_date >= request.to_date:
raise bad_request.FieldsValueError("from_date must be less than to_date")
def get_dates_agg() -> dict:
es_to_agg_types = (
("avg", AggregationType.avg.value),
("min", AggregationType.min.value),
("max", AggregationType.max.value),
)
return {
"dates": {
"date_histogram": {
"field": "timestamp",
"fixed_interval": f"{request.interval}s",
"min_doc_count": 1,
},
"aggs": {
agg_type: {es_agg: {"field": "value"}}
for es_agg, agg_type in es_to_agg_types
},
}
}
def get_variants_agg() -> dict:
return {
"variants": {"terms": {"field": "variant"}, "aggs": get_dates_agg()}
}
es_req = {
"size": 0,
"aggs": {
"workers": {
"terms": {"field": "worker"},
"aggs": {
"metrics": {
"terms": {"field": "metric"},
"aggs": get_variants_agg()
if request.split_by_variant
else get_dates_agg(),
}
},
}
},
}
query_terms = [
QueryBuilder.dates_range(request.from_date, request.to_date),
QueryBuilder.terms("metric", {item.key for item in request.items}),
]
if request.worker_ids:
query_terms.append(QueryBuilder.terms("worker", request.worker_ids))
es_req["query"] = {"bool": {"must": query_terms}}
with translate_errors_context(), TimingContext("es", "get_worker_stats"):
data = self._search_company_stats(company_id, es_req)
return self._extract_results(data, request.items, request.split_by_variant)
@staticmethod
def _extract_results(
data: dict, request_items: Sequence[StatItem], split_by_variant: bool
) -> dict:
"""
Clean results returned from elastic search (remove "aggregations", "buckets" etc.),
leave only aggregation types requested by the user and return a clean dictionary
and return a "clean" dictionary of
:param data: aggregation data retrieved from ES
:param request_items: aggs types requested by the user
:param split_by_variant: if False then aggregate by metric type, otherwise metric type + variant
"""
if "aggregations" not in data:
return {}
items_by_key = bucketize(request_items, key=attrgetter("key"))
aggs_per_metric = {
key: [item.aggregation for item in items]
for key, items in items_by_key.items()
}
def extract_date_stats(date: dict, metric_key) -> dict:
return {
"date": date["key"],
"count": date["doc_count"],
**{agg: date[agg]["value"] for agg in aggs_per_metric[metric_key]},
}
def extract_metric_results(
metric_or_variant: dict, metric_key: str
) -> Sequence[dict]:
return [
extract_date_stats(date, metric_key)
for date in metric_or_variant["dates"]["buckets"]
if date["doc_count"]
]
def extract_variant_results(metric: dict) -> dict:
metric_key = metric["key"]
return {
variant["key"]: extract_metric_results(variant, metric_key)
for variant in metric["variants"]["buckets"]
}
def extract_worker_results(worker: dict) -> dict:
return {
metric["key"]: extract_variant_results(metric)
if split_by_variant
else extract_metric_results(metric, metric["key"])
for metric in worker["metrics"]["buckets"]
}
return {
worker["key"]: extract_worker_results(worker)
for worker in data["aggregations"]["workers"]["buckets"]
}
def get_activity_report(
self,
company_id: str,
from_date: float,
to_date: float,
interval: int,
active_only: bool,
) -> Sequence[dict]:
"""
Get statistics for company workers metrics in the specified time range
Returned as date histograms for different aggregation types
grouped by worker, metric type (and optionally metric variant)
Note: all the statistics are retrieved using one ES query
"""
if from_date >= to_date:
raise bad_request.FieldsValueError("from_date must be less than to_date")
must = [QueryBuilder.dates_range(from_date, to_date)]
if active_only:
must.append({"exists": {"field": "task"}})
es_req = {
"size": 0,
"aggs": {
"dates": {
"date_histogram": {
"field": "timestamp",
"fixed_interval": f"{interval}s",
},
"aggs": {"workers_count": {"cardinality": {"field": "worker"}}},
}
},
"query": {"bool": {"must": must}},
}
with translate_errors_context(), TimingContext(
"es", "get_worker_activity_report"
):
data = self._search_company_stats(company_id, es_req)
if "aggregations" not in data:
return {}
ret = [
dict(date=date["key"], count=date["workers_count"]["value"])
for date in data["aggregations"]["dates"]["buckets"]
]
if ret and ret[-1]["date"] > (to_date - 0.9 * interval):
# remove last interval if it's incomplete. Allow 10% tolerance
ret.pop()
return ret

View File

@@ -0,0 +1 @@
from .basic import BasicConfig, ConfigurationError

176
apiserver/config/basic.py Normal file
View File

@@ -0,0 +1,176 @@
import logging
import logging.config
import os
import platform
from functools import reduce
from os import getenv
from os.path import expandvars
from pathlib import Path
from typing import List, Any, TypeVar
from pyhocon import ConfigTree, ConfigFactory
from pyparsing import (
ParseFatalException,
ParseException,
RecursiveGrammarException,
ParseSyntaxException,
)
from apiserver.utilities import json
EXTRA_CONFIG_PATHS = ("/opt/trains/config",)
EXTRA_CONFIG_PATH_OVERRIDE_VAR = "TRAINS_CONFIG_DIR"
EXTRA_CONFIG_PATH_SEP = ":" if platform.system() != "Windows" else ";"
class BasicConfig:
NotSet = object()
extra_config_values_env_key_sep = "__"
default_config_dir = "default"
def __init__(
self, folder: str = None, verbose: bool = True, prefix: str = "trains"
):
folder = (
Path(folder)
if folder
else Path(__file__).with_name(self.default_config_dir)
)
if not folder.is_dir():
raise ValueError("Invalid configuration folder")
self.verbose = verbose
self.prefix = prefix
self.extra_config_values_env_key_prefix = f"{self.prefix.upper()}__"
self._paths = [folder, *self._get_paths()]
self._config = self._reload()
def __getitem__(self, key):
return self._config[key]
def get(self, key: str, default: Any = NotSet) -> Any:
value = self._config.get(key, default)
if value is self.NotSet:
raise KeyError(
f"Unable to find value for key '{key}' and default value was not provided."
)
return value
def to_dict(self) -> dict:
return self._config.as_plain_ordered_dict()
def as_json(self) -> str:
return json.dumps(self.to_dict(), indent=2)
def logger(self, name: str) -> logging.Logger:
if Path(name).is_file():
name = Path(name).stem
path = ".".join((self.prefix, name))
return logging.getLogger(path)
def _read_extra_env_config_values(self) -> ConfigTree:
""" Loads extra configuration from environment-injected values """
result = ConfigTree()
prefix = self.extra_config_values_env_key_prefix
keys = sorted(k for k in os.environ if k.startswith(prefix))
for key in keys:
path = (
key[len(prefix) :]
.replace(self.extra_config_values_env_key_sep, ".")
.lower()
)
result = ConfigTree.merge_configs(
result, ConfigFactory.parse_string(f"{path}: {os.environ[key]}")
)
return result
def _get_paths(self) -> List[Path]:
default_paths = EXTRA_CONFIG_PATH_SEP.join(EXTRA_CONFIG_PATHS)
value = getenv(EXTRA_CONFIG_PATH_OVERRIDE_VAR, default_paths)
paths = [
Path(expandvars(v)).expanduser() for v in value.split(EXTRA_CONFIG_PATH_SEP)
]
if value is not default_paths:
invalid = [path for path in paths if not path.is_dir()]
if invalid:
print(
f"WARNING: Invalid paths in {EXTRA_CONFIG_PATH_OVERRIDE_VAR} env var: {' '.join(map(str, invalid))}"
)
return [path for path in paths if path.is_dir()]
def reload(self):
self._config = self._reload()
def _reload(self) -> ConfigTree:
extra_config_values = self._read_extra_env_config_values()
configs = [self._read_recursive(path) for path in self._paths]
return reduce(
lambda last, config: ConfigTree.merge_configs(
last, config, copy_trees=True
),
configs + [extra_config_values],
ConfigTree(),
)
def _read_recursive(self, conf_root) -> ConfigTree:
conf = ConfigTree()
if not conf_root:
return conf
if not conf_root.is_dir():
if self.verbose:
if not conf_root.exists():
print(f"No config in {conf_root}")
else:
print(f"Not a directory: {conf_root}")
return conf
if self.verbose:
print(f"Loading config from {conf_root}")
for file in conf_root.rglob("*.conf"):
key = ".".join(file.relative_to(conf_root).with_suffix("").parts)
conf.put(key, self._read_single_file(file))
return conf
def _read_single_file(self, file_path):
if self.verbose:
print(f"Loading config from file {file_path}")
try:
return ConfigFactory.parse_file(file_path)
except ParseSyntaxException as ex:
msg = f"Failed parsing {file_path} ({ex.__class__.__name__}): (at char {ex.loc}, line:{ex.lineno}, col:{ex.column})"
raise ConfigurationError(msg, file_path=file_path) from ex
except (ParseException, ParseFatalException, RecursiveGrammarException) as ex:
msg = f"Failed parsing {file_path} ({ex.__class__.__name__}): {ex}"
raise ConfigurationError(msg) from ex
except Exception as ex:
print(f"Failed loading {file_path}: {ex}")
raise
def initialize_logging(self):
logging_config = self.get("logging", None)
if not logging_config:
return
logging.config.dictConfig(logging_config)
class ConfigurationError(Exception):
def __init__(self, msg, file_path=None, *args):
super().__init__(msg, *args)
self.file_path = file_path
ConfigType = TypeVar("ConfigType", bound=BasicConfig)

View File

@@ -0,0 +1,140 @@
{
watch: false # Watch for changes (dev only)
debug: false # Debug mode
pretty_json: false # prettify json response
return_stack: true # return stack trace on error
log_calls: true # Log API Calls
# if 'return_stack' is true and error contains a status code, return stack trace only for these status codes
# valid values are:
# - an integer number, specifying a status code
# - a tuple of (code, subcode or list of subcodes)
return_stack_on_code: [
[500, 0] # raise on internal server error with no subcode
]
listen {
ip : "0.0.0.0"
port: 8008
}
version {
required: false
default: 1.0
# if set then calls to endpoints with the version
# greater that the current max version will be rejected
check_max_version: false
}
pre_populate {
enabled: false
zip_files: ["/path/to/export.zip"]
fail_on_error: false
# artifacts_path: "/mnt/fileserver"
}
# time in seconds to take an exclusive lock to init es and mongodb
# not including the pre_populate
db_init_timout: 120
mongo {
# controls whether FieldDoesNotExist exception will be raised for any extra attribute existing in stored data
# but not declared in a data model
strict: false
aggregate {
allow_disk_use: true
}
}
elastic {
probing {
# settings for inital probing of elastic connection
max_retries: 4
timeout: 30
}
upgrade_monitoring {
v16_migration_verification: true
}
}
auth {
# verify user tokens
verify_user_tokens: false
# max token expiration timeout in seconds (1 year)
max_expiration_sec: 31536000
# default token expiration timeout in seconds (30 days)
default_expiration_sec: 2592000
# cookie containing auth token, for requests arriving from a web-browser
session_auth_cookie_name: "trains_token_basic"
# cookie configuration for authorization cookies generated by auth.login
cookies {
httponly: true # allow only http to access the cookies (no JS etc)
secure: false # not using HTTPS
domain: null # Limit to localhost is not supported
max_age: 99999999999
}
# # A list of fixed users
# fixed_users {
# enabled: true
# users: [
# {
# username: "john"
# password: "123456"
# name: "john doe"
# }
#
# ]
# }
}
cors {
origins: "*"
# Not supported when origins is "*"
supports_credentials: true
}
default_company: "d1bd92a3b039400cbafc60a7a5b1e52b"
workers {
# Auto-register unknown workers on status reports and other calls
auto_register: true
# Timeout in seconds on task status update. If exceeded
# then task can be stopped without communicating to the worker
task_update_timeout: 600
}
check_for_updates {
enabled: true
# Check for updates every 24 hours
check_interval_sec: 86400
url: "https://updates.trains.allegro.ai/updates"
component_name: "trains-server"
# GET request timeout
request_timeout_sec: 3.0
}
statistics {
# Note: statistics are sent ONLY if the user has actively opted-in
supported: true
url: "https://updates.trains.allegro.ai/stats"
report_interval_hours: 24
agent_relevant_threshold_days: 30
max_retries: 5
max_backoff_sec: 5
}
}

View File

@@ -0,0 +1,45 @@
elastic {
events {
hosts: [{host: "127.0.0.1", port: 9200}]
args {
timeout: 60
dead_timeout: 10
max_retries: 3
retry_on_timeout: true
}
index_version: "1"
}
workers {
hosts: [{host:"127.0.0.1", port:9200}]
args {
timeout: 60
dead_timeout: 10
max_retries: 3
retry_on_timeout: true
}
index_version: "1"
}
}
mongo {
backend {
host: "mongodb://127.0.0.1:27017/backend"
}
auth {
host: "mongodb://127.0.0.1:27017/auth"
}
}
redis {
apiserver {
host: "127.0.0.1"
port: 6379
db: 0
}
workers {
host: "127.0.0.1"
port: 6379
db: 4
}
}

View File

@@ -13,17 +13,21 @@
credentials {
# system credentials as they appear in the auth DB, used for intra-service communications
apiserver {
role: "system"
user_key: "62T8CP7HGBC6647XF9314C2VY67RJO"
user_secret: "FhS8VZv_I4%6Mo$8S1BWc$n$=o1dMYSivuiWU-Vguq7qGOKskG-d+b@tn_Iq"
}
webserver {
role: "system"
user_key: "EYVQ385RW7Y2QQUH88CZ7DWIQ1WUHP"
user_secret: "yfc8KQo*GMXb*9p((qcYC7ByFIpF7I&4VH3BfUYXH%o9vX1ZUZQEEw1Inc)S"
revoke_in_fixed_mode: true
}
tests {
role: "user"
display_name: "Default User"
user_key: "EGRTCO8JMSIGI6S39GTP43NFWXDQOW"
user_secret: "x!XTov_G-#vspE*Y(h$Anm&DIc5Ou-F)jsl$PdOyj5wG1&E!Z8"
}
}
}

View File

@@ -0,0 +1,16 @@
fixed_users {
guest {
enabled: false
default_company: "025315a9321f49f8be07f5ac48fbcf92"
name: "Guest"
username: "guest"
password: "guest"
# Allow access only to the following endpoints when using user/pass credentials
allow_endpoints: [
"auth.login"
]
}
}

View File

@@ -0,0 +1,27 @@
es_index_prefix: "events"
ignore_iteration {
metrics: [":monitor:machine", ":monitor:gpu"]
}
events_retrieval {
state_expiration_sec: 3600
# max number of concurrent queries to ES when calculating events metrics
# should not exceed the amount of concurrent connections set in the ES driver
max_metrics_concurrency: 4
# the max amount of metrics to aggregate on
max_metrics_count: 100
# the max amount of variants to aggregate on
max_variants_count: 100
}
# if set then plot str will be checked for the valid json on plot add
# and the result of the check is written to the db
validate_plot_str: false
# If not 0 then the plots equal or greater to the size will be stored compressed in the DB
plot_compression_threshold: 100000

View File

@@ -0,0 +1,3 @@
tags_cache {
expiration_seconds: 3600
}

View File

@@ -0,0 +1,13 @@
# Order of featured projects, by name or ID
featured {
order: [
# {id: "<project-id>"}
# OR
# {name: "<project-name>"}
# OR
# {name_regex: "<python-regex>"}
]
# default featured index for public projects not specified in the order
public_default: 9999
}

View File

@@ -0,0 +1,11 @@
non_responsive_tasks_watchdog {
enabled: true
# In-progress tasks older than this value in seconds will be stopped by the watchdog
threshold_sec: 7200
# Watchdog will sleep for this number of seconds after each cycle
watch_interval_sec: 900
}
multi_task_histogram_limit: 100

47
apiserver/config/info.py Normal file
View File

@@ -0,0 +1,47 @@
from functools import lru_cache
from os import getenv
from pathlib import Path
from apiserver.config_repo import config
from apiserver.version import __version__
root = Path(__file__).parent.parent
def _get(prop_name, env_suffix=None, default=""):
value = getenv(f"TRAINS_SERVER_{env_suffix or prop_name}")
if value:
return value
try:
return (root / prop_name).read_text().strip()
except FileNotFoundError:
return default
@lru_cache()
def get_build_number():
return _get("BUILD")
@lru_cache()
def get_version():
return _get("VERSION", default=__version__)
@lru_cache()
def get_commit_number():
return _get("COMMIT")
@lru_cache()
def get_deployment_type() -> str:
return _get("DEPLOY", env_suffix="DEPLOYMENT_TYPE", default="manual")
def get_default_company():
return config.get("apiserver.default_company")
missed_es_upgrade = False
es_connection_error = False

4
apiserver/config_repo.py Normal file
View File

@@ -0,0 +1,4 @@
from apiserver.config import BasicConfig
config = BasicConfig()
config.initialize_logging()

View File

@@ -0,0 +1,98 @@
from os import getenv
from boltons.iterutils import first
from furl import furl
from jsonmodels import models
from jsonmodels.errors import ValidationError
from jsonmodels.fields import StringField
from mongoengine import register_connection
from mongoengine.connection import get_connection, disconnect
from apiserver.config_repo import config
from .defs import Database
from .utils import get_items
log = config.logger("database")
strict = config.get("apiserver.mongo.strict", True)
OVERRIDE_HOST_ENV_KEY = (
"TRAINS_MONGODB_SERVICE_HOST",
"MONGODB_SERVICE_HOST",
"MONGODB_SERVICE_SERVICE_HOST",
)
OVERRIDE_PORT_ENV_KEY = ("TRAINS_MONGODB_SERVICE_PORT", "MONGODB_SERVICE_PORT")
class DatabaseEntry(models.Base):
host = StringField(required=True)
alias = StringField()
class DatabaseFactory:
_entries = []
@classmethod
def initialize(cls):
db_entries = config.get("hosts.mongo", {})
missing = []
log.info("Initializing database connections")
override_hostname = first(map(getenv, OVERRIDE_HOST_ENV_KEY), None)
if override_hostname:
log.info(f"Using override mongodb host {override_hostname}")
override_port = first(map(getenv, OVERRIDE_PORT_ENV_KEY), None)
if override_port:
log.info(f"Using override mongodb port {override_port}")
for key, alias in get_items(Database).items():
if key not in db_entries:
missing.append(key)
continue
entry = DatabaseEntry(alias=alias, **db_entries.get(key))
if override_hostname:
entry.host = furl(entry.host).set(host=override_hostname).url
if override_port:
entry.host = furl(entry.host).set(port=override_port).url
try:
entry.validate()
log.info(
"Registering connection to %(alias)s (%(host)s)" % entry.to_struct()
)
register_connection(alias=alias, host=entry.host)
cls._entries.append(entry)
except ValidationError as ex:
raise Exception("Invalid database entry `%s`: %s" % (key, ex.args[0]))
if missing:
raise ValueError("Missing database configuration for %s" % ", ".join(missing))
@classmethod
def get_entries(cls):
return cls._entries
@classmethod
def get_hosts(cls):
return [entry.host for entry in cls.get_entries()]
@classmethod
def get_aliases(cls):
return [entry.alias for entry in cls.get_entries()]
@classmethod
def reconnect(cls):
for entry in cls.get_entries():
# there is bug in the current implementation that prevents
# reconnection from work so workaround this
# get_connection(entry.alias, reconnect=True)
disconnect(entry.alias)
register_connection(alias=entry.alias, host=entry.host)
get_connection(entry.alias)
db = DatabaseFactory()

View File

@@ -1,6 +1,7 @@
import re
from contextlib import contextmanager
from functools import wraps
from textwrap import shorten
import dpath
from dpath.exceptions import InvalidKeyName
@@ -17,7 +18,7 @@ from mongoengine.errors import (
)
from pymongo.errors import PyMongoError, NotMasterError
from apierrors import errors
from apiserver.apierrors import errors
class MakeGetAllQueryError(Exception):
@@ -33,7 +34,7 @@ class ParseCallError(Exception):
self.params = kwargs
def throws_default_error(err_cls):
def throws_default_error(err_cls, shorten_width: int = None):
"""
Used to make functions (Exception, str) -> Optional[str] searching for specialized error messages raise those
messages in ``err_cls``. If the decorated function does not find a suitable error message,
@@ -45,25 +46,49 @@ def throws_default_error(err_cls):
@wraps(func)
def wrapper(self, e, message, **kwargs):
extra_info = func(self, e, message, **kwargs)
raise err_cls(message, err=e, extra_info=extra_info)
err = str(e)
if shorten_width:
err = shorten(err, shorten_width, placeholder="...")
raise err_cls(message, err=err, extra_info=extra_info)
return wrapper
return decorator
# noinspection RegExpRedundantEscape
class ElasticErrorsHandler(object):
@classmethod
@throws_default_error(errors.server_error.DataError)
def _bulk_meta_error(cls, error):
try:
_, err_type = next(dpath.search(error, "*/error/type", yielded=True))
_, reason = next(dpath.search(error, "*/error/reason", yielded=True))
if err_type == "cluster_block_exception":
raise errors.server_error.LowDiskSpace(
"metrics, logs and all indexed data is in read-only mode!",
reason=re.sub(r"^index\s\[.*?\]\s", "", reason) if reason else ""
)
return
except StopIteration:
pass
@classmethod
@throws_default_error(errors.server_error.DataError, shorten_width=200)
def bulk_error(cls, e, _, **__):
if not e.errors:
return
# Currently we only handle the first error
error = e.errors[0]
cls._bulk_meta_error(error)
# Else try returning a better error string
for _, reason in dpath.search(e.errors[0], "*/error/reason", yielded=True):
return reason
# noinspection RegExpRedundantEscape
class MongoEngineErrorsHandler(object):
# NotUniqueError
__not_unique_regex = re.compile(
@@ -81,6 +106,7 @@ class MongoEngineErrorsHandler(object):
def validation_error(cls, e: ValidationError, message, **_):
# Thrown when a document is validated. Documents are validated by default on save and on update
err_dict = e.errors or {e.field_name: e.message}
err_dict = {key: str(value) for key, value in err_dict.items()}
raise errors.bad_request.DataValidationError(message, **err_dict)
@classmethod

View File

@@ -1,5 +1,6 @@
import re
from operator import itemgetter
from sys import maxsize
from typing import Type, Tuple
import six
from mongoengine import (
@@ -11,7 +12,11 @@ from mongoengine import (
SortedListField,
MapField,
DictField,
DynamicField,
)
from mongoengine.fields import key_not_string, key_starts_with_dollar, EmailField
NoneType = type(None)
class LengthRangeListField(ListField):
@@ -88,102 +93,22 @@ class CustomFloatField(FloatField):
self.error("Float value must be greater than %s" % str(self.greater_than))
# TODO: bucket name should be at most 63 characters....
aws_s3_bucket_only_regex = (
r"^s3://"
r"(?:(?:\w[A-Z0-9\-]+\w)\.)*(?:\w[A-Z0-9\-]+\w)" # bucket name
)
class CanonicEmailField(EmailField):
"""email field that is always lower cased"""
def __set__(self, instance, value: str):
if value is not None:
try:
value = value.lower()
except AttributeError:
pass
super().__set__(instance, value)
aws_s3_url_with_bucket_regex = (
r"^s3://"
r"(?:(?:\w[A-Z0-9\-]+\w)\.)*(?:\w[A-Z0-9\-]+\w)" # bucket name
r"(?:(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+(?:[A-Z]{2,6}\.?|[A-Z0-9-]{2,}(?<!-)\.?))" # domain...
)
non_aws_s3_regex = (
r"^s3://"
r"(?:(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+(?:[A-Z]{2,6}\.?|[A-Z0-9-]{2,}(?<!-)\.?)|" # domain...
r"localhost|" # localhost...
r"\d{1,3}\.\d{1,3}\.\d{1,3}\.\d{1,3}|" # ...or ipv4
r"\[?[A-F0-9]*:[A-F0-9:]+\]?)" # ...or ipv6
r"(?::\d+)?" # optional port
r"(?:/(?:(?:\w[A-Z0-9\-]+\w)\.)*(?:\w[A-Z0-9\-]+\w))" # bucket name
)
google_gs_bucket_only_regex = (
r"^gs://"
r"(?:(?:\w[A-Z0-9\-_]+\w)\.)*(?:\w[A-Z0-9\-_]+\w)" # bucket name
)
file_regex = r"^file://"
generic_url_regex = (
r"^%s://" # scheme placeholder
r"(?:(?:[A-Z0-9](?:[A-Z0-9-]{0,61}[A-Z0-9])?\.)+(?:[A-Z]{2,6}\.?|[A-Z0-9-]{2,}(?<!-)\.?)|" # domain...
r"localhost|" # localhost...
r"\d{1,3}\.\d{1,3}\.\d{1,3}\.\d{1,3}|" # ...or ipv4
r"\[?[A-F0-9]*:[A-F0-9:]+\]?)" # ...or ipv6
r"(?::\d+)?" # optional port
)
path_suffix = r"(?:/?|[/?]\S+)$"
file_path_suffix = r"(?:/\S*[^/]+)$"
class _RegexURLField(StringField):
_regex = []
def __init__(self, regex, **kwargs):
super(_RegexURLField, self).__init__(**kwargs)
regex = regex if isinstance(regex, (tuple, list)) else [regex]
self._regex = [
re.compile(e, re.IGNORECASE) if isinstance(e, six.string_types) else e
for e in regex
]
def validate(self, value):
# Check first if the scheme is valid
if not any(regex for regex in self._regex if regex.match(value)):
self.error("Invalid URL: {}".format(value))
return
class OutputDestinationField(_RegexURLField):
""" A field representing task output URL """
schemes = ["s3", "gs", "file"]
_expressions = (
aws_s3_bucket_only_regex + path_suffix,
aws_s3_url_with_bucket_regex + path_suffix,
non_aws_s3_regex + path_suffix,
google_gs_bucket_only_regex + path_suffix,
file_regex + path_suffix,
)
def __init__(self, **kwargs):
super(OutputDestinationField, self).__init__(self._expressions, **kwargs)
class SupportedURLField(_RegexURLField):
""" A field representing a model URL """
schemes = ["s3", "gs", "file", "http", "https"]
_expressions = tuple(
pattern + file_path_suffix
for pattern in (
aws_s3_bucket_only_regex,
aws_s3_url_with_bucket_regex,
non_aws_s3_regex,
google_gs_bucket_only_regex,
file_regex,
(generic_url_regex % "http"),
(generic_url_regex % "https"),
)
)
def __init__(self, **kwargs):
super(SupportedURLField, self).__init__(self._expressions, **kwargs)
def prepare_query_value(self, op, value):
if not isinstance(op, six.string_types):
return value
if value is not None:
value = value.lower()
return super().prepare_query_value(op, value)
class StrippedStringField(StringField):
@@ -221,17 +146,82 @@ def contains_empty_key(d):
return True
class SafeMapField(MapField):
class DictValidationMixin:
"""
DictField validation in MongoEngine requires default alias and permissions to access DB version:
https://github.com/MongoEngine/mongoengine/issues/2239
This is a stripped down implementation that does not require any of the above and implies Mongo ver 3.6+
"""
def _safe_validate(self: DictField, value):
if not isinstance(value, dict):
self.error("Only dictionaries may be used in a DictField")
if key_not_string(value):
msg = "Invalid dictionary key - documents must have only string keys"
self.error(msg)
if key_starts_with_dollar(value):
self.error(
'Invalid dictionary key name - keys may not startswith "$" characters'
)
super(DictField, self).validate(value)
class SafeMapField(MapField, DictValidationMixin):
def validate(self, value):
super(SafeMapField, self).validate(value)
self._safe_validate(value)
if contains_empty_key(value):
self.error("Empty keys are not allowed in a MapField")
class SafeDictField(DictField):
class SafeDictField(DictField, DictValidationMixin):
def validate(self, value):
super(SafeDictField, self).validate(value)
self._safe_validate(value)
if contains_empty_key(value):
self.error("Empty keys are not allowed in a DictField")
class SafeSortedListField(SortedListField):
"""
SortedListField that does not raise an error in case items are not comparable
(in which case they will be sorted by their string representation)
"""
def to_mongo(self, *args, **kwargs):
try:
return super(SafeSortedListField, self).to_mongo(*args, **kwargs)
except TypeError:
return self._safe_to_mongo(*args, **kwargs)
def _safe_to_mongo(self, value, use_db_field=True, fields=None):
value = super(SortedListField, self).to_mongo(value, use_db_field, fields)
if self._ordering is not None:
def key(v):
return str(itemgetter(self._ordering)(v))
else:
key = str
return sorted(value, key=key, reverse=self._order_reverse)
class UnionField(DynamicField):
def __init__(self, types, *args, **kwargs):
super(UnionField, self).__init__(*args, **kwargs)
self.types: Tuple[Type] = tuple(types)
def validate(self, value, clean=True):
if not isinstance(value, self.types):
type_names = [t.__name__ for t in self.types]
expected = " or ".join(
filter(
None,
(", ".join(type_names[:-1]), type_names[-1]))
)
self.error(
f"Expected {expected}, got {type(value).__name__}: {value}"
)
super(UnionField, self).validate(value, clean)

View File

@@ -1,9 +1,11 @@
from enum import Enum
from mongoengine import Document, StringField
from apierrors import errors
from database.model.base import DbModelMixin, ABSTRACT_FLAG
from database.model.company import Company
from database.model.user import User
from apiserver.apierrors import errors
from apiserver.database.model.base import DbModelMixin, ABSTRACT_FLAG
from apiserver.database.model.company import Company
from apiserver.database.model.user import User
class AttributedDocument(DbModelMixin, Document):
@@ -54,3 +56,7 @@ def validate_id(cls, company, **kwargs):
**{name: obj_id for obj_id in missing for name in id_to_name[obj_id]}
)
class EntityVisibility(Enum):
active = "active"
archived = "archived"

View File

@@ -6,10 +6,10 @@ from mongoengine import (
DateTimeField,
)
from database import Database, strict
from database.model import DbModelMixin
from database.model.base import AuthDocument
from database.utils import get_options
from apiserver.database import Database, strict
from apiserver.database.model import DbModelMixin
from apiserver.database.model.base import AuthDocument
from apiserver.database.utils import get_options
class Entities(object):
@@ -32,6 +32,8 @@ class Role(object):
""" Company user """
annotator = "annotator"
""" Annotator with limited access"""
guest = "guest"
""" Guest user. Read Only."""
@classmethod
def get_system_roles(cls) -> set:
@@ -43,15 +45,17 @@ class Role(object):
class Credentials(EmbeddedDocument):
meta = {"strict": False}
key = StringField(required=True)
secret = StringField(required=True)
last_used = DateTimeField()
class User(DbModelMixin, AuthDocument):
meta = {"db_alias": Database.auth, "strict": strict}
id = StringField(primary_key=True)
name = StringField(unique_with="company")
name = StringField()
created = DateTimeField()
""" User auth entry creation time """
@@ -68,5 +72,5 @@ class User(DbModelMixin, AuthDocument):
credentials = EmbeddedDocumentListField(Credentials, default=list)
""" Credentials generated for this user """
email = EmailField(unique=True, required=True)
email = EmailField(unique=True, sparse=True)
""" Email uniquely identifying the user """

View File

@@ -1,19 +1,26 @@
import re
from collections import namedtuple
from functools import reduce
from typing import Collection
from typing import Collection, Sequence, Union, Optional, Type, Tuple
from boltons.iterutils import first, bucketize, partition
from dateutil.parser import parse as parse_datetime
from mongoengine import Q, Document
from six import string_types
from mongoengine import Q, Document, ListField, StringField
from pymongo.command_cursor import CommandCursor
from apierrors import errors
from config import config
from database.errors import MakeGetAllQueryError
from database.projection import project_dict, ProjectionHelper
from database.props import PropsMixin
from database.query import RegexQ, RegexWrapper
from database.utils import get_company_or_none_constraint, get_fields_with_attr
from apiserver.apierrors import errors
from apiserver.apierrors.base import BaseError
from apiserver.config_repo import config
from apiserver.database.errors import MakeGetAllQueryError
from apiserver.database.projection import project_dict, ProjectionHelper
from apiserver.database.props import PropsMixin
from apiserver.database.query import RegexQ, RegexWrapper
from apiserver.database.utils import (
get_company_or_none_constraint,
get_fields_choices,
field_does_not_exist,
field_exists,
)
log = config.logger("dbmodel")
@@ -28,7 +35,12 @@ class AuthDocument(Document):
class ProperDictMixin(object):
def to_proper_dict(self, strip_private=True, only=None, extra_dict=None) -> dict:
def to_proper_dict(
self: Union["ProperDictMixin", Document],
strip_private=True,
only=None,
extra_dict=None,
) -> dict:
return self.properize_dict(
self.to_mongo(use_db_field=False).to_dict(),
strip_private=strip_private,
@@ -54,8 +66,9 @@ class ProperDictMixin(object):
class GetMixin(PropsMixin):
_text_score = "$text_score"
_projection_key = "projection"
_ordering_key = "order_by"
_search_text_key = "search_text"
_multi_field_param_sep = "__"
_multi_field_param_prefix = {
@@ -64,11 +77,13 @@ class GetMixin(PropsMixin):
}
MultiFieldParameters = namedtuple("MultiFieldParameters", "pattern fields")
_field_collation_overrides = {}
class QueryParameterOptions(object):
def __init__(
self,
pattern_fields=("name",),
list_fields=("tags", "id"),
list_fields=("tags", "system_tags", "id"),
datetime_fields=None,
fields=None,
):
@@ -84,11 +99,56 @@ class GetMixin(PropsMixin):
self.list_fields = list_fields
self.pattern_fields = pattern_fields
class ListFieldBucketHelper:
op_prefix = "__$"
legacy_exclude_prefix = "-"
_default = "in"
_ops = {
"not": ("nin", False),
"all": ("all", True),
"and": ("all", True),
}
_next = _default
_sticky = False
def __init__(self, legacy=False):
self._legacy = legacy
def key(self, v):
if v is None:
self._next = self._default
return self._default
elif self._legacy and v.startswith(self.legacy_exclude_prefix):
self._next = self._default
return self._ops["not"][0]
elif v.startswith(self.op_prefix):
self._next, self._sticky = self._ops.get(
v[len(self.op_prefix) :], (self._default, self._sticky)
)
return None
next_ = self._next
if not self._sticky:
self._next = self._default
return next_
def value_transform(self, v):
if self._legacy and v and v.startswith(self.legacy_exclude_prefix):
return v[len(self.legacy_exclude_prefix) :]
return v
get_all_query_options = QueryParameterOptions()
@classmethod
def get(
cls, company, id, *, _only=None, include_public=False, **kwargs
cls: Union["GetMixin", Document],
company,
id,
*,
_only=None,
include_public=False,
**kwargs,
) -> "GetMixin":
q = cls.objects(
cls._prepare_perm_query(company, allow_public=include_public)
@@ -155,17 +215,7 @@ class GetMixin(PropsMixin):
for field in tuple(opts.list_fields or ()):
data = parameters.pop(field, None)
if data:
if not isinstance(data, (list, tuple)):
raise MakeGetAllQueryError("expected list", field)
exclude = [t for t in data if t.startswith("-")]
include = list(set(data).difference(exclude))
mongoengine_field = field.replace(".", "__")
if include:
dict_query[f"{mongoengine_field}__in"] = include
if exclude:
dict_query[f"{mongoengine_field}__nin"] = [
t[1:] for t in exclude
]
query &= cls.get_list_field_query(field, data)
for field in opts.fields or []:
data = parameters.pop(field, None)
@@ -209,12 +259,72 @@ class GetMixin(PropsMixin):
return query & RegexQ(**dict_query)
@classmethod
def get_list_field_query(cls, field: str, data: Sequence[Optional[str]]) -> Q:
"""
Get a proper mongoengine Q object that represents an "or" query for the provided values
with respect to the given list field, with support for "none of empty" in case a None value
is included.
- Exclusion can be specified by a leading "-" for each value (API versions <2.8)
or by a preceding "__$not" value (operator)
- AND can be achieved using a preceding "__$all" or "__$and" value (operator)
"""
if not isinstance(data, (list, tuple)):
raise MakeGetAllQueryError("expected list", field)
# TODO: backwards compatibility only for older API versions
helper = cls.ListFieldBucketHelper(legacy=True)
actions = bucketize(
data, key=helper.key, value_transform=helper.value_transform
)
allow_empty = None in actions.get("in", {})
mongoengine_field = field.replace(".", "__")
q = RegexQ()
for action in filter(None, actions):
q &= RegexQ(
**{
f"{mongoengine_field}__{action}": list(
set(filter(None, actions[action]))
)
}
)
if not allow_empty:
return q
return (
q
| Q(**{f"{mongoengine_field}__exists": False})
| Q(**{mongoengine_field: []})
)
@classmethod
def _prepare_perm_query(cls, company, allow_public=False):
if allow_public:
return get_company_or_none_constraint(company)
return Q(company=company)
@classmethod
def validate_order_by(cls, parameters, search_text) -> Sequence:
"""
Validate and extract order_by params as a list
"""
order_by = parameters.get(cls._ordering_key)
if not order_by:
return []
order_by = order_by if isinstance(order_by, list) else [order_by]
order_by = [cls._text_score if x == "@text_score" else x for x in order_by]
if not search_text and cls._text_score in order_by:
raise errors.bad_request.FieldsValueError(
"text score cannot be used in order_by when search text is not used"
)
return order_by
@classmethod
def validate_paging(
cls, parameters=None, default_page=None, default_page_size=None
@@ -245,11 +355,40 @@ class GetMixin(PropsMixin):
return override_projection
if not parameters:
return []
return parameters.get("projection") or parameters.get("only_fields", [])
return parameters.get(cls._projection_key) or parameters.get("only_fields", [])
@classmethod
def set_default_ordering(cls, parameters, value):
parameters[cls._ordering_key] = parameters.get(cls._ordering_key) or value
def split_projection(
cls, projection: Sequence[str]
) -> Tuple[Collection[str], Collection[str]]:
"""Return include and exclude lists based on passed projection and class definition"""
if projection:
include, exclude = partition(
projection, key=lambda x: x[0] != ProjectionHelper.exclusion_prefix,
)
else:
include, exclude = [], []
exclude = {x.lstrip(ProjectionHelper.exclusion_prefix) for x in exclude}
return include, set(cls.get_exclude_fields()).union(exclude).difference(include)
@classmethod
def set_projection(cls, parameters: dict, value: Sequence[str]) -> Sequence[str]:
parameters.pop("only_fields", None)
parameters[cls._projection_key] = value
return value
@classmethod
def get_ordering(cls, parameters: dict) -> Optional[Sequence[str]]:
return parameters.get(cls._ordering_key)
@classmethod
def set_ordering(cls, parameters: dict, value: Sequence[str]) -> Sequence[str]:
parameters[cls._ordering_key] = value
return value
@classmethod
def set_default_ordering(cls, parameters: dict, value: Sequence[str]) -> None:
cls.set_ordering(parameters, cls.get_ordering(parameters) or value)
@classmethod
def get_many_with_join(
@@ -332,8 +471,9 @@ class GetMixin(PropsMixin):
`@text_score` keyword. A text index must be defined on the document type, otherwise an error will
be raised.
:param return_dicts: Return a list of dictionaries. If True, a list of dicts is returned (if projection was
requested, each contains only the requested projection).
If False, a QuerySet object is returned (lazy evaluated)
requested, each contains only the requested projection). If False, a QuerySet object is returned
(lazy evaluated). If return_dicts is requested then the entities with the None value in order_by field
are returned last in the ordering.
:param company: Company ID (required)
:param parameters: Parameters dict from which paging ordering and searching parameters are extracted.
:param query_dict: If provided, passed to prepare_query() along with all of the relevant arguments to produce
@@ -356,16 +496,38 @@ class GetMixin(PropsMixin):
q = cls._prepare_perm_query(company, allow_public=allow_public)
_query = (q & query) if query else q
if return_dicts:
return cls._get_many_override_none_ordering(
query=_query,
parameters=parameters,
override_projection=override_projection,
)
return cls._get_many_no_company(
query=_query,
parameters=parameters,
override_projection=override_projection,
return_dicts=return_dicts,
query=_query, parameters=parameters, override_projection=override_projection
)
@classmethod
def get_many_public(
cls, query: Q = None, projection: Collection[str] = None,
):
"""
Fetch all public documents matching a provided query.
:param query: Optional query object (mongoengine.Q).
:param projection: A list of projection fields.
:return: A list of documents matching the query.
"""
q = get_company_or_none_constraint()
_query = (q & query) if query else q
return cls._get_many_no_company(query=_query, override_projection=projection)
@classmethod
def _get_many_no_company(
cls, query, parameters=None, override_projection=None, return_dicts=True
cls: Union["GetMixin", Document],
query: Q,
parameters=None,
override_projection=None,
):
"""
Fetch all documents matching a provided query.
@@ -375,59 +537,138 @@ class GetMixin(PropsMixin):
NOTE: BE VERY CAREFUL WITH THIS CALL, as it allows returning data across companies.
:param query: Query object (mongoengine.Q)
:param return_dicts: Return a list of dictionaries. If True, a list of dicts is returned (if projection was
requested, each contains only the requested projection).
If False, a QuerySet object is returned (lazy evaluated)
:param parameters: Parameters dict from which paging ordering and searching parameters are extracted.
:param override_projection: A list of projection fields overriding any projection specified in the `param_dict`
argument
"""
parameters = parameters or {}
if not query:
raise ValueError("query or call_data must be provided")
parameters = parameters or {}
search_text = parameters.get(cls._search_text_key)
order_by = cls.validate_order_by(parameters=parameters, search_text=search_text)
page, page_size = cls.validate_paging(parameters=parameters)
order_by = parameters.get(cls._ordering_key)
if order_by:
order_by = order_by if isinstance(order_by, list) else [order_by]
order_by = [cls._text_score if x == "@text_score" else x for x in order_by]
search_text = parameters.get("search_text")
only = cls.get_projection(parameters, override_projection)
if not search_text and order_by and cls._text_score in order_by:
raise errors.bad_request.FieldsValueError(
"text score cannot be used in order_by when search text is not used"
)
include, exclude = cls.split_projection(
cls.get_projection(parameters, override_projection)
)
qs = cls.objects(query)
if search_text:
qs = qs.search_text(search_text)
if order_by:
# add ordering
qs = (
qs.order_by(order_by)
if isinstance(order_by, string_types)
else qs.order_by(*order_by)
)
if only:
qs = qs.order_by(*order_by)
if include:
# add projection
qs = qs.only(*only)
else:
exclude = set(cls.get_exclude_fields()).difference(only)
if exclude:
qs = qs.exclude(*exclude)
qs = qs.only(*include)
if exclude:
qs = qs.exclude(*exclude)
if page is not None and page_size:
# add paging
qs = qs.skip(page * page_size).limit(page_size)
if return_dicts:
return [obj.to_proper_dict(only=only) for obj in qs]
return qs
@classmethod
def _get_many_override_none_ordering(
cls: Union[Document, "GetMixin"],
query: Q = None,
parameters: dict = None,
override_projection: Collection[str] = None,
) -> Sequence[dict]:
"""
Fetch all documents matching a provided query. For the first order by field
the None values are sorted in the end regardless of the sorting order.
If the first order field is a user defined parameter (either from execution.parameters,
or from last_metrics) then the collation is set that sorts strings in numeric order where possible.
This is a company-less version for internal uses. We assume the caller has either added any necessary
constraints to the query or that no constraints are required.
NOTE: BE VERY CAREFUL WITH THIS CALL, as it allows returning data across companies.
:param query: Query object (mongoengine.Q)
:param parameters: Parameters dict from which paging ordering and searching parameters are extracted.
:param override_projection: A list of projection fields overriding any projection specified in the `param_dict`
argument
"""
if not query:
raise ValueError("query or call_data must be provided")
parameters = parameters or {}
search_text = parameters.get(cls._search_text_key)
order_by = cls.validate_order_by(parameters=parameters, search_text=search_text)
page, page_size = cls.validate_paging(parameters=parameters)
include, exclude = cls.split_projection(
cls.get_projection(parameters, override_projection)
)
query_sets = [cls.objects(query)]
if order_by:
order_field = first(
field for field in order_by if not field.startswith("$")
)
if (
order_field
and not order_field.startswith("-")
and "[" not in order_field
):
params = {}
mongo_field = order_field.replace(".", "__")
if mongo_field in cls.get_field_names_for_type(of_type=ListField):
params["is_list"] = True
elif mongo_field in cls.get_field_names_for_type(of_type=StringField):
params["empty_value"] = ""
non_empty = query & field_exists(mongo_field, **params)
empty = query & field_does_not_exist(mongo_field, **params)
query_sets = [cls.objects(non_empty), cls.objects(empty)]
query_sets = [qs.order_by(*order_by) for qs in query_sets]
if order_field:
collation_override = first(
v
for k, v in cls._field_collation_overrides.items()
if order_field.startswith(k)
)
if collation_override:
query_sets = [
qs.collation(collation=collation_override) for qs in query_sets
]
if search_text:
query_sets = [qs.search_text(search_text) for qs in query_sets]
if include:
# add projection
query_sets = [qs.only(*include) for qs in query_sets]
if exclude:
query_sets = [qs.exclude(*exclude) for qs in query_sets]
if page is None or not page_size:
return [obj.to_proper_dict(only=include) for qs in query_sets for obj in qs]
# add paging
ret = []
start = page * page_size
for qs in query_sets:
qs_size = qs.count()
if qs_size < start:
start -= qs_size
continue
ret.extend(
obj.to_proper_dict(only=include)
for obj in qs.skip(start).limit(page_size)
)
if len(ret) >= page_size:
break
start = 0
page_size -= len(ret)
return ret
@classmethod
def get_for_writing(
cls, *args, _only: Collection[str] = None, **kwargs
@@ -460,14 +701,24 @@ class GetMixin(PropsMixin):
class UpdateMixin(object):
__user_set_allowed_fields = None
__locked_when_published_fields = None
@classmethod
def user_set_allowed(cls):
res = getattr(cls, "__user_set_allowed_fields", None)
if res is None:
res = cls.__user_set_allowed_fields = dict(
get_fields_with_attr(cls, "user_set_allowed")
if cls.__user_set_allowed_fields is None:
cls.__user_set_allowed_fields = dict(
get_fields_choices(cls, "user_set_allowed")
)
return res
return cls.__user_set_allowed_fields
@classmethod
def locked_when_published(cls):
if cls.__locked_when_published_fields is None:
cls.__locked_when_published_fields = dict(
get_fields_choices(cls, "locked_when_published")
)
return cls.__locked_when_published_fields
@classmethod
def get_safe_update_dict(cls, fields):
@@ -488,7 +739,13 @@ class UpdateMixin(object):
return update_dict
@classmethod
def safe_update(cls, company_id, id, partial_update_dict, injected_update=None):
def safe_update(
cls: Union["UpdateMixin", Document],
company_id,
id,
partial_update_dict,
injected_update=None,
):
update_dict = cls.get_safe_update_dict(partial_update_dict)
if not update_dict:
return 0, {}
@@ -503,7 +760,52 @@ class UpdateMixin(object):
class DbModelMixin(GetMixin, ProperDictMixin, UpdateMixin):
""" Provide convenience methods for a subclass of mongoengine.Document """
pass
@classmethod
def aggregate(
cls: Union["DbModelMixin", Document],
pipeline: Sequence[dict],
allow_disk_use=None,
**kwargs,
) -> CommandCursor:
"""
Aggregate objects of this document class according to the provided pipeline.
:param pipeline: a list of dictionaries describing the pipeline stages
:param allow_disk_use: if True, allow the server to use disk space if aggregation query cannot fit in memory.
If None, default behavior will be used (see apiserver.conf/mongo/aggregate/allow_disk_use)
:param kwargs: additional keyword arguments passed to mongoengine
:return:
"""
kwargs.update(
allowDiskUse=allow_disk_use
if allow_disk_use is not None
else config.get("apiserver.mongo.aggregate.allow_disk_use", True)
)
return cls.objects.aggregate(pipeline, **kwargs)
@classmethod
def set_public(
cls: Type[Document],
company_id: str,
ids: Sequence[str],
invalid_cls: Type[BaseError],
enabled: bool = True,
):
if enabled:
items = list(cls.objects(id__in=ids, company=company_id).only("id"))
update = dict(set__company_origin=company_id, set__company="")
else:
items = list(
cls.objects(
id__in=ids, company__in=(None, ""), company_origin=company_id
).only("id")
)
update = dict(set__company=company_id, unset__company_origin=1)
if len(items) < len(ids):
missing = tuple(set(ids).difference(i.id for i in items))
raise invalid_cls(ids=missing)
return {"updated": cls.objects(id__in=ids).update(**update)}
def validate_id(cls, company, **kwargs):
@@ -525,5 +827,5 @@ def validate_id(cls, company, **kwargs):
id_to_name.setdefault(obj_id, []).append(name)
raise errors.bad_request.ValidationError(
"Invalid {} ids".format(cls.__name__.lower()),
**{name: obj_id for obj_id in missing for name in id_to_name[obj_id]}
**{name: obj_id for obj_id in missing for name in id_to_name[obj_id]},
)

View File

@@ -0,0 +1,38 @@
from mongoengine import (
Document,
EmbeddedDocument,
EmbeddedDocumentField,
StringField,
Q,
BooleanField,
DateTimeField,
)
from apiserver.database import Database, strict
from apiserver.database.fields import StrippedStringField
from apiserver.database.model import DbModelMixin
class ReportStatsOption(EmbeddedDocument):
enabled = BooleanField(default=False) # opt-in for statistics reporting
enabled_version = StringField() # server version when enabled
enabled_time = DateTimeField() # time when enabled
enabled_user = StringField() # ID of user who enabled
class CompanyDefaults(EmbeddedDocument):
cluster = StringField()
stats_option = EmbeddedDocumentField(ReportStatsOption, default=ReportStatsOption)
class Company(DbModelMixin, Document):
meta = {"db_alias": Database.backend, "strict": strict}
id = StringField(primary_key=True)
name = StrippedStringField(min_length=3)
defaults = EmbeddedDocumentField(CompanyDefaults, default=CompanyDefaults)
@classmethod
def _prepare_perm_query(cls, company, allow_public=False):
""" Override default behavior since a 'company' constraint is not supported for this document... """
return Q()

View File

@@ -0,0 +1,75 @@
from mongoengine import Document, StringField, DateTimeField, BooleanField
from apiserver.database import Database, strict
from apiserver.database.fields import StrippedStringField, SafeDictField, SafeSortedListField
from apiserver.database.model import DbModelMixin
from apiserver.database.model.base import GetMixin
from apiserver.database.model.model_labels import ModelLabels
from apiserver.database.model.company import Company
from apiserver.database.model.project import Project
from apiserver.database.model.task.task import Task
from apiserver.database.model.user import User
class Model(DbModelMixin, Document):
meta = {
"db_alias": Database.backend,
"strict": strict,
"indexes": [
"parent",
"project",
"task",
("company", "framework"),
("company", "name"),
("company", "user"),
{
"name": "%s.model.main_text_index" % Database.backend,
"fields": ["$name", "$id", "$comment", "$parent", "$task", "$project"],
"default_language": "english",
"weights": {
"name": 10,
"id": 10,
"comment": 10,
"parent": 5,
"task": 3,
"project": 3,
},
},
],
}
get_all_query_options = GetMixin.QueryParameterOptions(
pattern_fields=("name", "comment"),
fields=("ready",),
list_fields=(
"tags",
"system_tags",
"framework",
"uri",
"id",
"user",
"project",
"task",
"parent",
),
)
id = StringField(primary_key=True)
name = StrippedStringField(user_set_allowed=True, min_length=3)
parent = StringField(reference_field="Model", required=False)
user = StringField(required=True, reference_field=User)
company = StringField(required=True, reference_field=Company)
project = StringField(reference_field=Project, user_set_allowed=True)
created = DateTimeField(required=True, user_set_allowed=True)
task = StringField(reference_field=Task)
comment = StringField(user_set_allowed=True)
tags = SafeSortedListField(StringField(required=True), user_set_allowed=True)
system_tags = SafeSortedListField(StringField(required=True), user_set_allowed=True)
uri = StrippedStringField(default="", user_set_allowed=True)
framework = StringField()
design = SafeDictField()
labels = ModelLabels()
ready = BooleanField(required=True)
ui_cache = SafeDictField(
default=dict, user_set_allowed=True, exclude_by_default=True
)
company_origin = StringField(exclude_by_default=True)

View File

@@ -0,0 +1,14 @@
from apiserver.database.fields import NoneType, UnionField, SafeMapField
class ModelLabels(SafeMapField):
def __init__(self, *args, **kwargs):
super(ModelLabels, self).__init__(
field=UnionField(types=(int, NoneType)), *args, **kwargs
)
def validate(self, value):
super(ModelLabels, self).validate(value)
non_empty_values = list(filter(None, value.values()))
if non_empty_values and len(set(non_empty_values)) < len(non_empty_values):
self.error("Same label id appears more than once in model labels")

View File

@@ -1,27 +1,29 @@
from mongoengine import StringField, DateTimeField, ListField
from mongoengine import StringField, DateTimeField, IntField
from database import Database, strict
from database.fields import OutputDestinationField, StrippedStringField
from database.model import AttributedDocument
from database.model.base import GetMixin
from apiserver.database import Database, strict
from apiserver.database.fields import StrippedStringField, SafeSortedListField
from apiserver.database.model import AttributedDocument
from apiserver.database.model.base import GetMixin
class Project(AttributedDocument):
get_all_query_options = GetMixin.QueryParameterOptions(
pattern_fields=("name", "description"), list_fields=("tags", "id")
pattern_fields=("name", "description"),
list_fields=("tags", "system_tags", "id"),
)
meta = {
"db_alias": Database.backend,
"strict": strict,
"indexes": [
("company", "name"),
{
"name": "%s.project.main_text_index" % Database.backend,
"fields": ["$name", "$id", "$description"],
"default_language": "english",
"weights": {"name": 10, "id": 10, "description": 10},
}
},
],
}
@@ -34,6 +36,11 @@ class Project(AttributedDocument):
)
description = StringField(required=True)
created = DateTimeField(required=True)
tags = ListField(StringField(required=True), default=list)
default_output_destination = OutputDestinationField()
tags = SafeSortedListField(StringField(required=True))
system_tags = SafeSortedListField(StringField(required=True))
default_output_destination = StrippedStringField()
last_update = DateTimeField()
featured = IntField(default=9999)
logo_url = StringField()
logo_blob = StringField(exclude_by_default=True)
company_origin = StringField(exclude_by_default=True)

View File

@@ -0,0 +1,46 @@
from mongoengine import (
Document,
EmbeddedDocument,
StringField,
DateTimeField,
EmbeddedDocumentListField,
)
from apiserver.database import Database, strict
from apiserver.database.fields import StrippedStringField, SafeSortedListField
from apiserver.database.model import DbModelMixin
from apiserver.database.model.base import ProperDictMixin, GetMixin
from apiserver.database.model.company import Company
from apiserver.database.model.task.task import Task
class Entry(EmbeddedDocument, ProperDictMixin):
""" Entry representing a task waiting in the queue """
task = StringField(required=True, reference_field=Task)
''' Task ID '''
added = DateTimeField(required=True)
''' Added to the queue '''
class Queue(DbModelMixin, Document):
get_all_query_options = GetMixin.QueryParameterOptions(
pattern_fields=("name",),
list_fields=("tags", "system_tags", "id"),
)
meta = {
'db_alias': Database.backend,
'strict': strict,
}
id = StringField(primary_key=True)
name = StrippedStringField(
required=True, unique_with="company", min_length=3, user_set_allowed=True
)
company = StringField(required=True, reference_field=Company)
created = DateTimeField(required=True)
tags = SafeSortedListField(StringField(required=True), default=list, user_set_allowed=True)
system_tags = SafeSortedListField(StringField(required=True), user_set_allowed=True)
entries = EmbeddedDocumentListField(Entry, default=list)
last_update = DateTimeField()

View File

@@ -0,0 +1,57 @@
from typing import Any, Optional, Sequence, Tuple
from mongoengine import Document, StringField, DynamicField, Q
from mongoengine.errors import NotUniqueError
from apiserver.database import Database, strict
from apiserver.database.model import DbModelMixin
class SettingKeys:
server__uuid = "server.uuid"
class Settings(DbModelMixin, Document):
meta = {
"db_alias": Database.backend,
"strict": strict,
}
key = StringField(primary_key=True)
value = DynamicField()
@classmethod
def get_by_key(cls, key: str, default: Optional[Any] = None, sep: str = ".") -> Any:
key = key.strip(sep)
res = Settings.objects(key=key).first()
if not res:
return default
return res.value
@classmethod
def get_by_prefix(
cls, key_prefix: str, default: Optional[Any] = None, sep: str = "."
) -> Sequence[Tuple[str, Any]]:
key_prefix = key_prefix.strip(sep)
query = Q(key=key_prefix) | Q(key__startswith=key_prefix + sep)
res = Settings.objects(query)
if not res:
return default
return [(x.key, x.value) for x in res]
@classmethod
def set_or_add_value(cls, key: str, value: Any, sep: str = ".") -> bool:
""" Sets a new value or adds a new key/value setting (if key does not exist) """
key = key.strip(sep)
res = Settings.objects(key=key).update(key=key, value=value, upsert=True)
return bool(res)
@classmethod
def add_value(cls, key: str, value: Any, sep: str = ".") -> bool:
""" Adds a new key/value settings. Fails if key already exists. """
key = key.strip(sep)
try:
res = cls(key=key, value=value).save(force_insert=True)
return bool(res)
except NotUniqueError:
return False

View File

@@ -0,0 +1,39 @@
from mongoengine import (
EmbeddedDocument,
StringField,
DynamicField,
LongField,
EmbeddedDocumentField,
)
from apiserver.database.fields import SafeMapField
class MetricEvent(EmbeddedDocument):
meta = {
# For backwards compatibility reasons
"strict": False,
}
metric = StringField(required=True)
variant = StringField(required=True)
value = DynamicField(required=True)
min_value = DynamicField() # for backwards compatibility reasons
max_value = DynamicField() # for backwards compatibility reasons
class EventStats(EmbeddedDocument):
meta = {
# For backwards compatibility reasons
"strict": False,
}
last_update = LongField()
class MetricEventStats(EmbeddedDocument):
meta = {
# For backwards compatibility reasons
"strict": False,
}
metric = StringField(required=True)
event_stats_by_type = SafeMapField(field=EmbeddedDocumentField(EventStats))

View File

@@ -1,7 +1,7 @@
from mongoengine import EmbeddedDocument, StringField
from database.utils import get_options
from database.fields import OutputDestinationField
from apiserver.database.fields import StrippedStringField
from apiserver.database.utils import get_options
class Result(object):
@@ -10,7 +10,7 @@ class Result(object):
class Output(EmbeddedDocument):
destination = OutputDestinationField()
destination = StrippedStringField()
model = StringField(reference_field='Model')
error = StringField(user_set_allowed=True)
result = StringField(choices=get_options(Result))

View File

@@ -0,0 +1,238 @@
from typing import Dict
from mongoengine import (
StringField,
EmbeddedDocumentField,
EmbeddedDocument,
DateTimeField,
IntField,
ListField,
LongField,
)
from apiserver.database import Database, strict
from apiserver.database.fields import (
StrippedStringField,
SafeMapField,
SafeDictField,
UnionField,
SafeSortedListField,
)
from apiserver.database.model import AttributedDocument
from apiserver.database.model.base import ProperDictMixin, GetMixin
from apiserver.database.model.model_labels import ModelLabels
from apiserver.database.model.project import Project
from apiserver.database.utils import get_options
from .metrics import MetricEvent, MetricEventStats
from .output import Output
DEFAULT_LAST_ITERATION = 0
class TaskStatus(object):
created = "created"
queued = "queued"
in_progress = "in_progress"
stopped = "stopped"
publishing = "publishing"
published = "published"
closed = "closed"
failed = "failed"
completed = "completed"
unknown = "unknown"
class TaskStatusMessage(object):
stopping = "stopping"
class TaskSystemTags(object):
development = "development"
class Script(EmbeddedDocument, ProperDictMixin):
binary = StringField(default="python", strip=True)
repository = StringField(default="", strip=True)
tag = StringField(strip=True)
branch = StringField(strip=True)
version_num = StringField(strip=True)
entry_point = StringField(default="", strip=True)
working_dir = StringField(strip=True)
requirements = SafeDictField()
diff = StringField()
class ArtifactTypeData(EmbeddedDocument):
preview = StringField()
content_type = StringField()
data_hash = StringField()
class ArtifactModes:
input = "input"
output = "output"
DEFAULT_ARTIFACT_MODE = ArtifactModes.output
class Artifact(EmbeddedDocument):
key = StringField(required=True)
type = StringField(required=True)
mode = StringField(choices=get_options(ArtifactModes), default=DEFAULT_ARTIFACT_MODE)
uri = StringField()
hash = StringField()
content_size = LongField()
timestamp = LongField()
type_data = EmbeddedDocumentField(ArtifactTypeData)
display_data = SafeSortedListField(ListField(UnionField((int, float, str))))
class ParamsItem(EmbeddedDocument, ProperDictMixin):
section = StringField(required=True)
name = StringField(required=True)
value = StringField(required=True)
type = StringField()
description = StringField()
class ConfigurationItem(EmbeddedDocument, ProperDictMixin):
name = StringField(required=True)
value = StringField(required=True)
type = StringField()
description = StringField()
class Execution(EmbeddedDocument, ProperDictMixin):
meta = {"strict": strict}
test_split = IntField(default=0)
parameters = SafeDictField(default=dict)
model = StringField(reference_field="Model")
model_desc = SafeMapField(StringField(default=""))
model_labels = ModelLabels()
framework = StringField()
artifacts: Dict[str, Artifact] = SafeMapField(field=EmbeddedDocumentField(Artifact))
docker_cmd = StringField()
queue = StringField()
""" Queue ID where task was queued """
class TaskType(object):
training = "training"
testing = "testing"
inference = "inference"
data_processing = "data_processing"
application = "application"
monitor = "monitor"
controller = "controller"
optimizer = "optimizer"
service = "service"
qc = "qc"
custom = "custom"
external_task_types = set(get_options(TaskType))
class Task(AttributedDocument):
_numeric_locale = {"locale": "en_US", "numericOrdering": True}
_field_collation_overrides = {
"execution.parameters.": _numeric_locale,
"last_metrics.": _numeric_locale,
"hyperparams.": _numeric_locale,
"configuration.": _numeric_locale,
}
meta = {
"db_alias": Database.backend,
"strict": strict,
"indexes": [
"created",
"started",
"completed",
"active_duration",
"parent",
"project",
("company", "name"),
("company", "user"),
("company", "status", "type"),
("company", "system_tags", "last_update"),
("company", "type", "system_tags", "status"),
("company", "project", "type", "system_tags", "status"),
("status", "last_update"), # for maintenance tasks
{
"name": "%s.task.main_text_index" % Database.backend,
"fields": [
"$name",
"$id",
"$comment",
"$execution.model",
"$output.model",
"$script.repository",
"$script.entry_point",
],
"default_language": "english",
"weights": {
"name": 10,
"id": 10,
"comment": 10,
"execution.model": 2,
"output.model": 2,
"script.repository": 1,
"script.entry_point": 1,
},
},
],
}
get_all_query_options = GetMixin.QueryParameterOptions(
list_fields=("id", "user", "tags", "system_tags", "type", "status", "project", "parent"),
datetime_fields=("status_changed",),
pattern_fields=("name", "comment"),
)
id = StringField(primary_key=True)
name = StrippedStringField(
required=True, user_set_allowed=True, sparse=False, min_length=3
)
type = StringField(required=True, choices=get_options(TaskType))
status = StringField(default=TaskStatus.created, choices=get_options(TaskStatus))
status_reason = StringField()
status_message = StringField()
status_changed = DateTimeField()
comment = StringField(user_set_allowed=True)
created = DateTimeField(required=True, user_set_allowed=True)
started = DateTimeField()
completed = DateTimeField()
published = DateTimeField()
active_duration = IntField(default=None)
parent = StringField(reference_field="Task")
project = StringField(reference_field=Project, user_set_allowed=True)
output: Output = EmbeddedDocumentField(Output, default=Output)
execution: Execution = EmbeddedDocumentField(Execution, default=Execution)
tags = SafeSortedListField(StringField(required=True), user_set_allowed=True)
system_tags = SafeSortedListField(StringField(required=True), user_set_allowed=True)
script: Script = EmbeddedDocumentField(Script, default=Script)
last_worker = StringField()
last_worker_report = DateTimeField()
last_update = DateTimeField()
last_change = DateTimeField()
last_iteration = IntField(default=DEFAULT_LAST_ITERATION)
last_metrics = SafeMapField(field=SafeMapField(EmbeddedDocumentField(MetricEvent)))
metric_stats = SafeMapField(field=EmbeddedDocumentField(MetricEventStats))
company_origin = StringField(exclude_by_default=True)
duration = IntField() # task duration in seconds
hyperparams = SafeMapField(field=SafeMapField(EmbeddedDocumentField(ParamsItem)))
configuration = SafeMapField(field=EmbeddedDocumentField(ConfigurationItem))
runtime = SafeDictField(default=dict)
docker_init_script = StringField()
def get_index_company(self) -> str:
"""
Returns the company ID used for locating indices containing task data.
In case the task has a valid company, this is the company ID.
Otherwise, if the task has a company_origin, this is a task that has been made public and the
origin company should be used.
Otherwise, an empty company is used.
"""
return self.company or self.company_origin or ""

View File

@@ -0,0 +1,22 @@
from mongoengine import Document, StringField, DynamicField
from apiserver.database import Database, strict
from apiserver.database.model import DbModelMixin
from apiserver.database.model.base import GetMixin
from apiserver.database.model.company import Company
class User(DbModelMixin, Document):
meta = {
"db_alias": Database.backend,
"strict": strict,
}
get_all_query_options = GetMixin.QueryParameterOptions(list_fields=("id",))
id = StringField(primary_key=True)
company = StringField(required=True, reference_field=Company)
name = StringField(required=True, user_set_allowed=True)
family_name = StringField(user_set_allowed=True)
given_name = StringField(user_set_allowed=True)
avatar = StringField()
preferences = DynamicField(default="", exclude_by_default=True)

View File

@@ -0,0 +1,18 @@
from mongoengine import Document, DateTimeField, StringField
from apiserver.database import Database, strict
from apiserver.database.model import DbModelMixin
class Version(DbModelMixin, Document):
meta = {
"collection": "versions", # custom collection name ('version' is not a proper collection name...)
"db_alias": Database.backend, # although we'll use this model for all databases, a default must be defined
"strict": strict,
"indexes": [("-created", "-num")],
}
id = StringField(primary_key=True)
num = StringField(required=True)
created = DateTimeField(required=True)
desc = StringField()

View File

@@ -0,0 +1,377 @@
import threading
from concurrent.futures import ThreadPoolExecutor
from itertools import groupby, chain
from typing import Sequence, Dict, Callable, Tuple, Any, Type
import dpath.path
from apiserver.apierrors import errors
from apiserver.database.props import PropsMixin
SEP = "."
def project_dict(data, projection, separator=SEP):
"""
Project partial data from a dictionary into a new dictionary
:param data: Input dictionary
:param projection: List of dictionary paths (each a string with field names separated using a separator)
:param separator: Separator (default is '.')
:return: A new dictionary containing only the projected parts from the original dictionary
"""
assert isinstance(data, dict)
result = {}
def copy_path(path_parts, source, destination):
src, dst = source, destination
try:
for depth, path_part in enumerate(path_parts[:-1]):
src_part = src[path_part]
if isinstance(src_part, dict):
src = src_part
dst = dst.setdefault(path_part, {})
elif isinstance(src_part, (list, tuple)):
if path_part not in dst:
dst[path_part] = [{} for _ in range(len(src_part))]
elif not isinstance(dst[path_part], (list, tuple)):
raise TypeError(
"Incompatible destination type %s for %s (list expected)"
% (type(dst), separator.join(path_parts[: depth + 1]))
)
elif not len(dst[path_part]) == len(src_part):
raise ValueError(
"Destination list length differs from source length for %s"
% separator.join(path_parts[: depth + 1])
)
dst[path_part] = [
copy_path(path_parts[depth + 1 :], s, d)
for s, d in zip(src_part, dst[path_part])
]
return destination
else:
raise TypeError(
"Unsupported projection type %s for %s"
% (type(src), separator.join(path_parts[: depth + 1]))
)
last_part = path_parts[-1]
dst[last_part] = src[last_part]
except KeyError:
# Projection field not in source, no biggie.
pass
return destination
for projection_path in sorted(projection):
copy_path(
path_parts=projection_path.split(separator), source=data, destination=result
)
return result
class _ReferenceProxy(dict):
def __init__(self, id):
super(_ReferenceProxy, self).__init__(**({"id": id} if id else {}))
class _ProxyManager:
lock = threading.Lock()
def __init__(self):
self._proxies: Dict[str, _ReferenceProxy] = {}
def add(self, id):
with self.lock:
proxy = self._proxies.get(id)
if proxy is None:
proxy = self._proxies[id] = _ReferenceProxy(id)
return proxy
def update(self, result):
proxy = self._proxies.get(result.get("id"))
if proxy is not None:
proxy.update(result)
class ProjectionHelper(object):
pool = ThreadPoolExecutor()
exclusion_prefix = "-"
@property
def doc_projection(self):
return self._doc_projection
def __init__(self, doc_cls, projection, expand_reference_ids=False):
super(ProjectionHelper, self).__init__()
self._should_expand_reference_ids = expand_reference_ids
self._doc_cls = doc_cls
self._doc_projection = None
self._ref_projection = None
self._proxy_manager = _ProxyManager()
# Cached dpath paths for each of the result documents
self._cached_results_paths: Dict[int, Sequence[Tuple[Any, Type]]] = {}
self._parse_projection(projection)
def _collect_projection_fields(self, doc_cls, projection):
"""
Collect projection for the given document into immediate document projection and reference documents projection
:param doc_cls: Document class
:param projection: List of projection fields
:return: A tuple of document projection and reference fields information
"""
doc_projection = (
set()
) # Projection fields for this class (used in the main query)
ref_projection_info = (
[]
) # Projection information for reference fields (used in join queries)
for field in projection:
field_ = field.lstrip(self.exclusion_prefix)
for ref_field, ref_field_cls in doc_cls.get_reference_fields().items():
if not field_.startswith(ref_field):
# Doesn't start with a reference field
continue
if field_ == ref_field:
# Field is exactly a reference field. In this case we won't perform any inner projection (for that,
# use '<reference field name>.*')
continue
subfield = field_[len(ref_field) :]
if not subfield.startswith(SEP):
# Starts with something that looks like a reference field, but isn't
continue
ref_projection_info.append(
(
ref_field,
ref_field_cls,
("" if field_[0] == field[0] else self.exclusion_prefix)
+ subfield[1:],
)
)
break
else:
# Not a reference field, just add to the top-level projection
# We strip any trailing '*' since it means nothing for simple fields and for embedded documents
orig_field = field
if field.endswith(".*"):
field = field[:-2]
if not field.lstrip(self.exclusion_prefix):
raise errors.bad_request.InvalidFields(
field=orig_field, object=doc_cls.__name__
)
doc_projection.add(field)
return doc_projection, ref_projection_info
def _parse_projection(self, projection):
"""
Prepare the projection data structures for get_many_with_join().
:param projection: A list of field names that should be returned by the query. Sub-fields can be specified
using '.' (i.e. "parent.name"). A field terminated by '.*' indicated that all of the field's sub-fields
should be returned (only relevant for fields that represent sub-documents or referenced documents)
:type projection: list of strings
:returns A tuple of (class fields projection, reference fields projection)
"""
doc_cls = self._doc_cls
assert issubclass(doc_cls, PropsMixin)
if not projection:
return [], {}
doc_projection, ref_projection_info = self._collect_projection_fields(
doc_cls, projection
)
def normalize_cls_projection(cls_, fields):
""" Normalize projection for this class and group (expand *, for once) """
if "*" in fields:
return list(fields.difference("*").union(cls_.get_fields()))
return list(fields)
def compute_ref_cls_projection(cls_, group):
""" Compute inner projection for this class and group """
subfields = set([x[2] for x in group if x[2]])
return normalize_cls_projection(cls_, subfields)
def sort_key(proj_info):
return proj_info[:2]
# Aggregate by reference field. We'll leave out '*' from the projected items since
ref_projection = {
ref_field: dict(cls=ref_cls, only=compute_ref_cls_projection(ref_cls, g))
for (ref_field, ref_cls), g in groupby(
sorted(ref_projection_info, key=sort_key), sort_key
)
}
# Make sure this doesn't contain any reference field we'll join anyway
# (i.e. in case only_fields=[project, project.name])
doc_projection = normalize_cls_projection(
doc_cls, doc_projection.difference(ref_projection)
)
# Make sure that in case one or more field is a subfield of another field, we only use the the top-level field.
# This is done since in such a case, MongoDB will only use the most restrictive field (most nested field) and
# won't return some of the data we need.
# This way, we make sure to use the most inclusive field that contains all requested subfields.
projection_set = set(doc_projection)
doc_projection = [
field
for field in doc_projection
if not any(
field.startswith(f"{other_field}.")
for other_field in projection_set - {field}
)
]
# Make sure we didn't get any invalid projection fields for this class
invalid_fields = [
f
for f in doc_projection
if f.partition(SEP)[0].lstrip(self.exclusion_prefix)
not in doc_cls.get_fields()
]
if invalid_fields:
raise errors.bad_request.InvalidFields(
fields=invalid_fields, object=doc_cls.__name__
)
if ref_projection:
# Join mode - use both normal projection fields and top-level reference fields
doc_projection = set(doc_projection)
for field in set(ref_projection).difference(doc_projection):
if any(f for f in doc_projection if field.startswith(f)):
continue
doc_projection.add(field)
doc_projection = list(doc_projection)
# If there are include fields (not only exclude) then add an id field
if (
not all(p.startswith(self.exclusion_prefix) for p in doc_projection)
and "id" not in doc_projection
):
doc_projection.append("id")
self._doc_projection = doc_projection
self._ref_projection = ref_projection
def _search(
self,
doc_cls: PropsMixin,
obj: dict,
path: str,
factory: Callable[[str], dict] = None,
) -> Sequence[str]:
"""
Search for a path in the given object, return the list of values found for the
given path (multiple values may exist if the path is a glob expression)
:param doc_cls: The document class represented by the object
:param obj: Data object
:param path: Path to a leaf in the data object ("." separated, may contain "*")
(in case the path contains "*", there may be multiple values)
:param factory: If provided, replace each value found with an instance provided by the factory.
"""
norm_path = doc_cls.get_dpath_translated_path(path)
globlist = norm_path.strip(SEP).split(SEP)
obj_paths = self._cached_results_paths.get(id(obj))
if obj_paths is None:
obj_paths = self._cached_results_paths[id(obj)] = list(
dpath.path.paths(obj, dirs=True, skip=True)
)
paths = [p for p in obj_paths if dpath.path.match(p, globlist)]
def search_and_replace(p: Sequence[Tuple[str, Type]]) -> Any:
parent = None
target = obj
for part in p:
parent = target
target = target[part[0]]
if parent and factory:
parent[p[-1][0]] = factory(target)
return target
return [search_and_replace(p) for p in paths]
def project(self, results, projection_func):
"""
Perform projection on query results, using the provided projection func.
:param results: A list of results dictionaries on which projection should be performed
:param projection_func: A callable that receives a document type, list of ids and projection and returns query
results. This callable is used in order to perform sub-queries during projection
:return: Modified results (in-place)
"""
cls = self._doc_cls
ref_projection = self._ref_projection
if ref_projection:
# Join mode - get results for each reference fields projection required (this is the join step)
# Note: this is a recursive step, so nested reference fields are supported
def collect_ids(ref_field_name):
"""
Collect unique IDs for the given reference path from all result documents.
All collected IDs are replaced in the result dictionaries with a reference proxy generated by the
proxies manager to allow rapid update later on when projection results are obtained.
"""
all_ids = (
self._search(
cls, res, ref_field_name, factory=self._proxy_manager.add
)
for res in results
)
return list(filter(None, set(chain.from_iterable(all_ids))))
items = [
tup
for tup in (
(*item, collect_ids(item[0])) for item in ref_projection.items()
)
if tup[2]
]
if items:
def do_projection(item):
ref_field_name, data, ids = item
doc_type = data["cls"]
doc_only = list(filter(None, data["only"]))
doc_only = list({"id"} | set(doc_only)) if doc_only else None
for res in projection_func(
doc_type=doc_type, projection=doc_only, ids=ids
):
self._proxy_manager.update(res)
if len(ref_projection) == 1:
do_projection(items[0])
else:
for _ in self.pool.map(do_projection, items):
# From ThreadPoolExecutor.map() documentation: If a call raises an exception then that exception
# will be raised when its value is retrieved from the map() iterator
pass
def do_expand_reference_ids(result, skip_fields=None):
ref_fields = cls.get_reference_fields()
if skip_fields:
ref_fields = set(ref_fields) - set(skip_fields)
self._expand_reference_fields(cls, result, ref_fields)
# any reference field not projected should be expanded
if self._should_expand_reference_ids:
for result in results:
do_expand_reference_ids(
result, skip_fields=list(ref_projection) if ref_projection else None
)
return results
def _expand_reference_fields(self, doc_cls, result, fields):
for ref_field_name in fields:
self._search(doc_cls, result, ref_field_name, factory=_ReferenceProxy)
def expand_reference_ids(self, doc_cls, result):
self._expand_reference_fields(doc_cls, result, doc_cls.get_reference_fields())

View File

@@ -1,17 +1,19 @@
from collections import OrderedDict
from collections import OrderedDict, defaultdict
from itertools import chain
from operator import attrgetter
from threading import Lock
from typing import Sequence
import six
from mongoengine import EmbeddedDocumentField, EmbeddedDocumentListField
from mongoengine.base import get_document
from mongoengine.base import get_document, BaseField
from database.fields import (
from apiserver.database.fields import (
LengthRangeEmbeddedDocumentListField,
UniqueEmbeddedDocumentListField,
EmbeddedDocumentSortedListField,
)
from database.utils import get_fields, get_fields_and_attr
from apiserver.database.utils import get_fields, get_fields_attr
class PropsMixin(object):
@@ -19,6 +21,7 @@ class PropsMixin(object):
__cached_reference_fields = None
__cached_exclude_fields = None
__cached_fields_with_instance = None
__cached_field_names_per_type = None
__cached_dpath_computed_fields_lock = Lock()
__cached_dpath_computed_fields = None
@@ -29,6 +32,39 @@ class PropsMixin(object):
cls.__cached_fields = get_fields(cls)
return cls.__cached_fields
@classmethod
def get_field_names_for_type(cls, of_type=BaseField):
"""
Return field names per type including subfields
The fields of derived types are also returned
"""
assert issubclass(of_type, BaseField)
if cls.__cached_field_names_per_type is None:
fields = defaultdict(list)
for name, field in get_fields(cls, return_instance=True, subfields=True):
fields[type(field)].append(name)
for type_ in fields:
fields[type_].extend(
chain.from_iterable(
fields[other_type]
for other_type in fields
if other_type != type_ and issubclass(other_type, type_)
)
)
cls.__cached_field_names_per_type = fields
if of_type not in cls.__cached_field_names_per_type:
names = list(
chain.from_iterable(
field_names
for type_, field_names in cls.__cached_field_names_per_type.items()
if issubclass(type_, of_type)
)
)
cls.__cached_field_names_per_type[of_type] = names
return cls.__cached_field_names_per_type[of_type]
@classmethod
def get_fields_with_instance(cls, doc_cls):
if cls.__cached_fields_with_instance is None:
@@ -42,7 +78,7 @@ class PropsMixin(object):
@staticmethod
def _get_fields_with_attr(cls_, attr):
""" Get all fields with the specified attribute (supports nested fields) """
res = get_fields_and_attr(cls_, attr=attr)
res = get_fields_attr(cls_, attr=attr)
def resolve_doc(v):
if not isinstance(v, six.string_types):
@@ -122,6 +158,14 @@ class PropsMixin(object):
cls.__cached_reference_fields = OrderedDict(sorted(fields.items()))
return cls.__cached_reference_fields
@classmethod
def get_extra_projection(cls, fields: Sequence) -> tuple:
if isinstance(fields, str):
fields = [fields]
return tuple(
set(fields).union(cls.get_fields()).difference(cls.get_exclude_fields())
)
@classmethod
def get_exclude_fields(cls):
if cls.__cached_exclude_fields is None:
@@ -140,3 +184,18 @@ class PropsMixin(object):
result = separator.join(translated)
cls.__cached_dpath_computed_fields[path] = result
return cls.__cached_dpath_computed_fields[path]
def get_field_value(self, field_path: str, default=None):
"""
Return the document field_path value by the field_path name.
The path may contain '.'. If on any level the path is
not found then the default value is returned
"""
path_elements = field_path.split(".")
current = self
for name in path_elements:
current = getattr(current, name, default)
if current == default:
break
return current

View File

@@ -1,8 +1,14 @@
import copy
import re
from typing import Union
from mongoengine import Q
from mongoengine.queryset.visitor import QueryCompilerVisitor, SimplificationVisitor, QCombination
from mongoengine.queryset.visitor import (
QueryCompilerVisitor,
SimplificationVisitor,
QCombination,
QNode,
)
class RegexWrapper(object):
@@ -17,17 +23,16 @@ class RegexWrapper(object):
class RegexMixin(object):
def to_query(self, document):
def to_query(self: Union["RegexMixin", QNode], document):
query = self.accept(SimplificationVisitor())
query = query.accept(RegexQueryCompilerVisitor(document))
return query
def _combine(self, other, operation):
def _combine(self: Union["RegexMixin", QNode], other, operation):
"""Combine this node with another node into a QCombination
object.
"""
if getattr(other, 'empty', True):
if getattr(other, "empty", True):
return self
if self.empty:

235
apiserver/database/utils.py Normal file
View File

@@ -0,0 +1,235 @@
import hashlib
from inspect import ismethod, getmembers
from typing import Sequence, Tuple, Set, Optional, Callable, Any
from uuid import uuid4
from mongoengine import EmbeddedDocumentField, ListField, Document, Q
from mongoengine.base import BaseField
from .errors import translate_errors_context, ParseCallError
def get_fields(cls, of_type=BaseField, return_instance=False, subfields=False):
return _get_fields(
cls,
of_type=of_type,
subfields=subfields,
selector=lambda k, v: (k, v) if return_instance else k,
)
def get_fields_attr(cls, attr):
""" get field names from a class containing mongoengine fields """
return dict(
_get_fields(cls, with_attr=attr, selector=lambda k, v: (k, getattr(v, attr)))
)
def get_fields_choices(cls, attr):
def get_choices(field_name: str, field: BaseField) -> Tuple:
if isinstance(field, ListField):
return field_name, field.field.choices
return field_name, field.choices
return dict(_get_fields(cls, with_attr=attr, subfields=True, selector=get_choices))
def _get_fields(
cls,
with_attr=None,
of_type=BaseField,
subfields=False,
selector: Optional[Callable[[str, BaseField], Any]] = None,
path: Tuple[str, ...] = (),
):
fields = []
for field_name, field in cls._fields.items():
field_path = path + (field_name,)
if isinstance(field, of_type) and (not with_attr or hasattr(field, with_attr)):
full_name = "__".join(field_path)
fields.append(selector(full_name, field) if selector else full_name)
if subfields and isinstance(field, EmbeddedDocumentField):
fields.extend(
_get_fields(
field.document_type,
with_attr=with_attr,
of_type=of_type,
subfields=subfields,
selector=selector,
path=field_path,
)
)
return fields
def get_items(cls):
""" get key/value items from an enum-like class (members represent enumeration key/value) """
res = {k: v for k, v in getmembers(cls) if not (k.startswith("_") or ismethod(v))}
return res
def get_options(cls):
""" get options from an enum-like class (members represent enumeration key/value) """
return list(get_items(cls).values())
# return a dictionary of items which:
# 1. are in the call_data
# 2. are in the fields dictionary, and their value in the call_data matches the type in fields
# 3. are in the cls_fields
def parse_from_call(call_data, fields, cls_fields, discard_none_values=True):
if not isinstance(fields, dict):
# fields should be key=>type dict
fields = {k: None for k in fields}
fields = {k: v for k, v in fields.items() if k in cls_fields}
res = {}
with translate_errors_context("parsing call data"):
for field, desc in fields.items():
value = call_data.get(field)
if value is None:
if not discard_none_values and field in call_data:
# we'll keep the None value in case the field actually exists in the call data
res[field] = None
continue
if desc:
if issubclass(desc, Document):
if not desc.objects(id=value).only("id"):
raise ParseCallError(
"expecting %s id" % desc.__name__, id=value, field=field
)
elif callable(desc):
try:
desc(value)
except TypeError:
raise ParseCallError(f"expecting {desc.__name__}", field=field)
except Exception as ex:
raise ParseCallError(str(ex), field=field)
res[field] = value
return res
def init_cls_from_base(cls, instance):
return cls(
**{
k: v
for k, v in instance.to_mongo(use_db_field=False).to_dict().items()
if k[0] != "_"
}
)
def get_company_or_none_constraint(company=None):
return Q(company__in=(company, None, "")) | Q(company__exists=False)
def field_does_not_exist(field: str, empty_value=None, is_list=False) -> Q:
"""
Creates a query object used for finding a field that doesn't exist, or has None or an empty value.
:param field: Field name
:param empty_value: The empty value to test for (None means no specific empty value will be used)
:param is_list: Is this a list (array) field. In this case, instead of testing for an empty value,
the length of the array will be used (len==0 means empty)
:return:
"""
query = Q(**{f"{field}__exists": False}) | Q(
**{f"{field}__in": {empty_value, None}}
)
if is_list:
query |= Q(**{f"{field}__size": 0})
return query
def field_exists(field: str, empty_value=None, is_list=False) -> Q:
"""
Creates a query object used for finding a field that exists and is not None or empty.
:param field: Field name
:param empty_value: The empty value to test for (None means no specific empty value will be used)
:param is_list: Is this a list (array) field. In this case, instead of testing for an empty value,
the length of the array will be used (len==0 means empty)
:return:
"""
query = Q(**{f"{field}__exists": True}) & Q(
**{f"{field}__nin": {empty_value, None}}
)
if is_list:
query &= Q(**{f"{field}__not__size": 0})
return query
def get_subkey(d, key_path, default=None):
""" Get a key from a nested dictionary. kay_path is a '.' separated string of keys used to traverse
the nested dictionary.
"""
keys = key_path.split(".")
for i, key in enumerate(keys):
if not isinstance(d, dict):
raise KeyError(
"Expecting a dict (%s)" % (".".join(keys[:i]) if i else "bad input")
)
d = d.get(key)
if d is None:
return default
return d
def id():
return str(uuid4()).replace("-", "")
def hash_field_name(s):
""" Hash field name into a unique safe string """
return hashlib.md5(s.encode()).hexdigest()
def merge_dicts(*dicts):
base = {}
for dct in dicts:
base.update(dct)
return base
def filter_fields(cls, fields):
"""From the fields dictionary return only the fields that match cls fields"""
return {key: fields[key] for key in fields if key in get_fields(cls)}
def _names_set(*names: str) -> Set[str]:
"""
Given a list of names return set with names and '-names'
"""
return set(names) | set(f"-{name}" for name in names)
system_tag_names = {
"model": _names_set("active", "archived"),
"project": _names_set("archived", "public", "default"),
"task": _names_set("active", "archived", "development"),
"queue": _names_set("default"),
}
system_tag_prefixes = {"task": _names_set("annotat")}
def partition_tags(
entity: str, tags: Sequence[str], system_tags: Optional[Sequence[str]] = ()
) -> Tuple[Sequence[str], Sequence[str]]:
"""
Partition the given tags sequence into system and user-defined tags
:param entity: The name of the entity that defines the list of the system tags
:param tags: The tags to partition
:param system_tags: Optional. If passed then these tags are considered system together
with those defined for the entity.
:return: a tuple where the first element is the sequence of user-defined tags and
the second element is the sequence of system tags
"""
tags = set(tags)
system_tags = set(system_tags)
system_tags |= tags & system_tag_names[entity]
prefixes = system_tag_prefixes.get(entity, [])
system_tags |= {t for t in tags for p in prefixes if t.lower().startswith(p)}
return list(tags - system_tags), list(system_tags)

View File

@@ -0,0 +1,58 @@
#!/usr/bin/env python3
"""
Apply elasticsearch mappings to given hosts.
"""
import argparse
import json
from pathlib import Path
from typing import Optional, Sequence
from elasticsearch import Elasticsearch
HERE = Path(__file__).resolve().parent
def apply_mappings_to_cluster(
hosts: Sequence, key: Optional[str] = None, es_args: dict = None
):
"""Hosts maybe a sequence of strings or dicts in the form {"host": <host>, "port": <port>}"""
def _send_template(f):
with f.open() as json_data:
data = json.load(json_data)
template_name = f.stem
res = es.indices.put_template(template_name, body=data)
return {"mapping": template_name, "result": res}
p = HERE / "mappings"
if key:
files = (p / key).glob("*.json")
else:
files = p.glob("**/*.json")
es = Elasticsearch(hosts=hosts, **(es_args or {}))
return [_send_template(f) for f in files]
def parse_args():
parser = argparse.ArgumentParser(
description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter
)
parser.add_argument("--key", help="host key, e.g. events, datasets etc.")
parser.add_argument(
"--hosts",
nargs="+",
help="list of es hosts from the same cluster, where each host is http[s]://[user:password@]host:port",
)
return parser.parse_args()
def main():
args = parse_args()
print(">>>>> Applying mapping to " + str(args.hosts))
res = apply_mappings_to_cluster(args.hosts, args.key)
print(res)
if __name__ == "__main__":
main()

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