2024-04-25 12:49:59 +00:00
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import os
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2024-03-20 23:11:36 +00:00
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import logging
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2024-04-14 21:55:00 +00:00
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import requests
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2024-06-02 14:34:31 +00:00
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from typing import List, Union
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2024-04-14 21:55:00 +00:00
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2024-04-22 18:27:43 +00:00
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from apps.ollama.main import (
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generate_ollama_embeddings,
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GenerateEmbeddingsForm,
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)
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2024-03-09 03:26:39 +00:00
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2024-04-25 12:49:59 +00:00
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from huggingface_hub import snapshot_download
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2024-04-22 23:36:46 +00:00
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from langchain_core.documents import Document
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from langchain_community.retrievers import BM25Retriever
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from langchain.retrievers import (
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ContextualCompressionRetriever,
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EnsembleRetriever,
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)
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2024-04-25 21:03:00 +00:00
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from typing import Optional
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2024-03-20 23:11:36 +00:00
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2024-06-09 10:01:25 +00:00
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from utils.misc import get_last_user_message, add_or_update_system_message
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2024-06-02 14:34:31 +00:00
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from config import SRC_LOG_LEVELS, CHROMA_CLIENT
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2024-03-20 23:11:36 +00:00
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log = logging.getLogger(__name__)
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log.setLevel(SRC_LOG_LEVELS["RAG"])
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2024-03-09 03:26:39 +00:00
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def query_doc(
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collection_name: str,
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query: str,
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embedding_function,
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k: int,
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):
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try:
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collection = CHROMA_CLIENT.get_collection(name=collection_name)
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query_embeddings = embedding_function(query)
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result = collection.query(
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query_embeddings=[query_embeddings],
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n_results=k,
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)
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log.info(f"query_doc:result {result}")
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return result
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except Exception as e:
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raise e
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2024-04-27 19:38:50 +00:00
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def query_doc_with_hybrid_search(
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collection_name: str,
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query: str,
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embedding_function,
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k: int,
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reranking_function,
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r: float,
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):
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try:
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collection = CHROMA_CLIENT.get_collection(name=collection_name)
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documents = collection.get() # get all documents
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bm25_retriever = BM25Retriever.from_texts(
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texts=documents.get("documents"),
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metadatas=documents.get("metadatas"),
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)
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bm25_retriever.k = k
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chroma_retriever = ChromaRetriever(
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collection=collection,
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embedding_function=embedding_function,
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top_n=k,
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)
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ensemble_retriever = EnsembleRetriever(
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retrievers=[bm25_retriever, chroma_retriever], weights=[0.5, 0.5]
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)
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compressor = RerankCompressor(
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embedding_function=embedding_function,
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top_n=k,
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reranking_function=reranking_function,
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r_score=r,
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)
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compression_retriever = ContextualCompressionRetriever(
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base_compressor=compressor, base_retriever=ensemble_retriever
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)
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result = compression_retriever.invoke(query)
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result = {
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"distances": [[d.metadata.get("score") for d in result]],
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"documents": [[d.page_content for d in result]],
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"metadatas": [[d.metadata for d in result]],
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}
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log.info(f"query_doc_with_hybrid_search:result {result}")
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return result
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except Exception as e:
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raise e
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2024-04-26 01:00:47 +00:00
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def merge_and_sort_query_results(query_results, k, reverse=False):
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# Initialize lists to store combined data
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combined_distances = []
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combined_documents = []
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combined_metadatas = []
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for data in query_results:
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combined_distances.extend(data["distances"][0])
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combined_documents.extend(data["documents"][0])
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combined_metadatas.extend(data["metadatas"][0])
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# Create a list of tuples (distance, document, metadata)
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combined = list(zip(combined_distances, combined_documents, combined_metadatas))
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# Sort the list based on distances
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combined.sort(key=lambda x: x[0], reverse=reverse)
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# We don't have anything :-(
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if not combined:
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sorted_distances = []
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sorted_documents = []
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sorted_metadatas = []
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else:
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# Unzip the sorted list
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sorted_distances, sorted_documents, sorted_metadatas = zip(*combined)
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# Slicing the lists to include only k elements
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sorted_distances = list(sorted_distances)[:k]
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sorted_documents = list(sorted_documents)[:k]
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sorted_metadatas = list(sorted_metadatas)[:k]
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# Create the output dictionary
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result = {
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"distances": [sorted_distances],
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"documents": [sorted_documents],
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"metadatas": [sorted_metadatas],
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}
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return result
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def query_collection(
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collection_names: List[str],
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query: str,
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embedding_function,
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k: int,
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):
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results = []
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for collection_name in collection_names:
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try:
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result = query_doc(
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collection_name=collection_name,
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query=query,
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k=k,
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embedding_function=embedding_function,
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)
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results.append(result)
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except:
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pass
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return merge_and_sort_query_results(results, k=k)
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def query_collection_with_hybrid_search(
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collection_names: List[str],
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query: str,
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embedding_function,
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k: int,
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reranking_function,
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r: float,
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):
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results = []
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for collection_name in collection_names:
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try:
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result = query_doc_with_hybrid_search(
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collection_name=collection_name,
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query=query,
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embedding_function=embedding_function,
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k=k,
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reranking_function=reranking_function,
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r=r,
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)
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results.append(result)
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except:
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pass
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return merge_and_sort_query_results(results, k=k, reverse=True)
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def rag_template(template: str, context: str, query: str):
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template = template.replace("[context]", context)
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template = template.replace("[query]", query)
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return template
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def get_embedding_function(
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embedding_engine,
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embedding_model,
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embedding_function,
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openai_key,
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openai_url,
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batch_size,
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):
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if embedding_engine == "":
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return lambda query: embedding_function.encode(query).tolist()
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elif embedding_engine in ["ollama", "openai"]:
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if embedding_engine == "ollama":
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func = lambda query: generate_ollama_embeddings(
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GenerateEmbeddingsForm(
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**{
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"model": embedding_model,
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"prompt": query,
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}
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)
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)
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elif embedding_engine == "openai":
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func = lambda query: generate_openai_embeddings(
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model=embedding_model,
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text=query,
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key=openai_key,
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url=openai_url,
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)
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def generate_multiple(query, f):
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if isinstance(query, list):
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if embedding_engine == "openai":
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embeddings = []
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for i in range(0, len(query), batch_size):
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embeddings.extend(f(query[i : i + batch_size]))
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return embeddings
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else:
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return [f(q) for q in query]
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else:
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return f(query)
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return lambda query: generate_multiple(query, func)
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2024-06-11 08:10:24 +00:00
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def get_rag_context(
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docs,
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messages,
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embedding_function,
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k,
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reranking_function,
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r,
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hybrid_search,
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):
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log.debug(f"docs: {docs} {messages} {embedding_function} {reranking_function}")
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2024-06-09 10:01:25 +00:00
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query = get_last_user_message(messages)
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2024-03-11 01:40:50 +00:00
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extracted_collections = []
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relevant_contexts = []
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for doc in docs:
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context = None
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2024-05-06 22:49:00 +00:00
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collection_names = (
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doc["collection_names"]
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if doc["type"] == "collection"
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else [doc["collection_name"]]
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)
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collection_names = set(collection_names).difference(extracted_collections)
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if not collection_names:
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2024-04-22 23:36:46 +00:00
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log.debug(f"skipping {doc} as it has already been extracted")
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continue
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2024-04-14 23:48:15 +00:00
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try:
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if doc["type"] == "text":
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context = doc["content"]
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else:
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if hybrid_search:
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context = query_collection_with_hybrid_search(
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collection_names=collection_names,
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query=query,
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embedding_function=embedding_function,
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k=k,
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reranking_function=reranking_function,
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r=r,
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)
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else:
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context = query_collection(
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collection_names=collection_names,
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query=query,
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embedding_function=embedding_function,
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k=k,
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)
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2024-03-11 01:40:50 +00:00
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except Exception as e:
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log.exception(e)
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context = None
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if context:
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relevant_contexts.append({**context, "source": doc})
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extracted_collections.extend(collection_names)
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context_string = ""
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2024-05-06 22:14:33 +00:00
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2024-05-06 13:14:51 +00:00
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|
citations = []
|
2024-03-11 01:40:50 +00:00
|
|
|
for context in relevant_contexts:
|
2024-04-30 05:51:30 +00:00
|
|
|
try:
|
|
|
|
if "documents" in context:
|
2024-05-06 22:49:00 +00:00
|
|
|
context_string += "\n\n".join(
|
|
|
|
[text for text in context["documents"][0] if text is not None]
|
|
|
|
)
|
|
|
|
|
2024-05-06 13:14:51 +00:00
|
|
|
if "metadatas" in context:
|
|
|
|
citations.append(
|
|
|
|
{
|
2024-05-06 22:49:00 +00:00
|
|
|
"source": context["source"],
|
2024-05-06 13:14:51 +00:00
|
|
|
"document": context["documents"][0],
|
|
|
|
"metadata": context["metadatas"][0],
|
|
|
|
}
|
|
|
|
)
|
2024-04-30 05:51:30 +00:00
|
|
|
except Exception as e:
|
|
|
|
log.exception(e)
|
2024-05-06 22:14:33 +00:00
|
|
|
|
2024-04-22 23:36:46 +00:00
|
|
|
context_string = context_string.strip()
|
2024-03-11 01:40:50 +00:00
|
|
|
|
2024-06-11 08:10:24 +00:00
|
|
|
return context_string, citations
|
2024-04-04 17:01:23 +00:00
|
|
|
|
2024-04-04 18:07:42 +00:00
|
|
|
|
2024-04-25 12:49:59 +00:00
|
|
|
def get_model_path(model: str, update_model: bool = False):
|
|
|
|
# Construct huggingface_hub kwargs with local_files_only to return the snapshot path
|
|
|
|
cache_dir = os.getenv("SENTENCE_TRANSFORMERS_HOME")
|
|
|
|
|
|
|
|
local_files_only = not update_model
|
|
|
|
|
|
|
|
snapshot_kwargs = {
|
|
|
|
"cache_dir": cache_dir,
|
|
|
|
"local_files_only": local_files_only,
|
|
|
|
}
|
|
|
|
|
2024-04-25 18:28:31 +00:00
|
|
|
log.debug(f"model: {model}")
|
2024-04-25 12:49:59 +00:00
|
|
|
log.debug(f"snapshot_kwargs: {snapshot_kwargs}")
|
|
|
|
|
|
|
|
# Inspiration from upstream sentence_transformers
|
|
|
|
if (
|
|
|
|
os.path.exists(model)
|
|
|
|
or ("\\" in model or model.count("/") > 1)
|
|
|
|
and local_files_only
|
|
|
|
):
|
|
|
|
# If fully qualified path exists, return input, else set repo_id
|
|
|
|
return model
|
|
|
|
elif "/" not in model:
|
|
|
|
# Set valid repo_id for model short-name
|
|
|
|
model = "sentence-transformers" + "/" + model
|
|
|
|
|
|
|
|
snapshot_kwargs["repo_id"] = model
|
|
|
|
|
|
|
|
# Attempt to query the huggingface_hub library to determine the local path and/or to update
|
|
|
|
try:
|
|
|
|
model_repo_path = snapshot_download(**snapshot_kwargs)
|
|
|
|
log.debug(f"model_repo_path: {model_repo_path}")
|
|
|
|
return model_repo_path
|
|
|
|
except Exception as e:
|
|
|
|
log.exception(f"Cannot determine model snapshot path: {e}")
|
|
|
|
return model
|
|
|
|
|
|
|
|
|
2024-04-14 23:15:39 +00:00
|
|
|
def generate_openai_embeddings(
|
2024-06-02 14:34:31 +00:00
|
|
|
model: str,
|
|
|
|
text: Union[str, list[str]],
|
|
|
|
key: str,
|
|
|
|
url: str = "https://api.openai.com/v1",
|
2024-04-14 23:15:39 +00:00
|
|
|
):
|
2024-06-02 14:34:31 +00:00
|
|
|
if isinstance(text, list):
|
|
|
|
embeddings = generate_openai_batch_embeddings(model, text, key, url)
|
|
|
|
else:
|
|
|
|
embeddings = generate_openai_batch_embeddings(model, [text], key, url)
|
|
|
|
|
|
|
|
return embeddings[0] if isinstance(text, str) else embeddings
|
|
|
|
|
|
|
|
|
|
|
|
def generate_openai_batch_embeddings(
|
|
|
|
model: str, texts: list[str], key: str, url: str = "https://api.openai.com/v1"
|
|
|
|
) -> Optional[list[list[float]]]:
|
2024-04-14 23:15:39 +00:00
|
|
|
try:
|
|
|
|
r = requests.post(
|
2024-04-20 20:15:59 +00:00
|
|
|
f"{url}/embeddings",
|
2024-04-14 23:15:39 +00:00
|
|
|
headers={
|
|
|
|
"Content-Type": "application/json",
|
|
|
|
"Authorization": f"Bearer {key}",
|
|
|
|
},
|
2024-06-02 14:34:31 +00:00
|
|
|
json={"input": texts, "model": model},
|
2024-04-14 23:15:39 +00:00
|
|
|
)
|
|
|
|
r.raise_for_status()
|
|
|
|
data = r.json()
|
|
|
|
if "data" in data:
|
2024-06-02 14:34:31 +00:00
|
|
|
return [elem["embedding"] for elem in data["data"]]
|
2024-04-14 23:15:39 +00:00
|
|
|
else:
|
|
|
|
raise "Something went wrong :/"
|
|
|
|
except Exception as e:
|
|
|
|
print(e)
|
|
|
|
return None
|
2024-04-22 20:49:58 +00:00
|
|
|
|
|
|
|
|
|
|
|
from typing import Any
|
|
|
|
|
|
|
|
from langchain_core.retrievers import BaseRetriever
|
2024-04-22 23:36:46 +00:00
|
|
|
from langchain_core.callbacks import CallbackManagerForRetrieverRun
|
2024-04-22 20:49:58 +00:00
|
|
|
|
|
|
|
|
|
|
|
class ChromaRetriever(BaseRetriever):
|
|
|
|
collection: Any
|
2024-04-27 19:38:50 +00:00
|
|
|
embedding_function: Any
|
2024-04-22 23:36:46 +00:00
|
|
|
top_n: int
|
2024-04-22 20:49:58 +00:00
|
|
|
|
|
|
|
def _get_relevant_documents(
|
|
|
|
self,
|
|
|
|
query: str,
|
|
|
|
*,
|
|
|
|
run_manager: CallbackManagerForRetrieverRun,
|
|
|
|
) -> List[Document]:
|
2024-04-27 19:38:50 +00:00
|
|
|
query_embeddings = self.embedding_function(query)
|
2024-04-22 20:49:58 +00:00
|
|
|
|
|
|
|
results = self.collection.query(
|
|
|
|
query_embeddings=[query_embeddings],
|
2024-04-22 23:36:46 +00:00
|
|
|
n_results=self.top_n,
|
2024-04-22 20:49:58 +00:00
|
|
|
)
|
|
|
|
|
|
|
|
ids = results["ids"][0]
|
|
|
|
metadatas = results["metadatas"][0]
|
|
|
|
documents = results["documents"][0]
|
|
|
|
|
2024-04-29 17:15:58 +00:00
|
|
|
results = []
|
|
|
|
for idx in range(len(ids)):
|
|
|
|
results.append(
|
|
|
|
Document(
|
|
|
|
metadata=metadatas[idx],
|
|
|
|
page_content=documents[idx],
|
|
|
|
)
|
2024-04-22 20:49:58 +00:00
|
|
|
)
|
2024-04-29 17:15:58 +00:00
|
|
|
return results
|
2024-04-22 23:36:46 +00:00
|
|
|
|
|
|
|
|
|
|
|
import operator
|
|
|
|
|
|
|
|
from typing import Optional, Sequence
|
|
|
|
|
|
|
|
from langchain_core.documents import BaseDocumentCompressor, Document
|
|
|
|
from langchain_core.callbacks import Callbacks
|
|
|
|
from langchain_core.pydantic_v1 import Extra
|
|
|
|
|
|
|
|
from sentence_transformers import util
|
|
|
|
|
|
|
|
|
|
|
|
class RerankCompressor(BaseDocumentCompressor):
|
2024-04-27 19:38:50 +00:00
|
|
|
embedding_function: Any
|
2024-04-29 17:15:58 +00:00
|
|
|
top_n: int
|
2024-04-22 23:36:46 +00:00
|
|
|
reranking_function: Any
|
|
|
|
r_score: float
|
|
|
|
|
|
|
|
class Config:
|
|
|
|
extra = Extra.forbid
|
|
|
|
arbitrary_types_allowed = True
|
|
|
|
|
|
|
|
def compress_documents(
|
|
|
|
self,
|
|
|
|
documents: Sequence[Document],
|
|
|
|
query: str,
|
|
|
|
callbacks: Optional[Callbacks] = None,
|
|
|
|
) -> Sequence[Document]:
|
2024-04-29 17:15:58 +00:00
|
|
|
reranking = self.reranking_function is not None
|
|
|
|
|
|
|
|
if reranking:
|
2024-04-22 23:36:46 +00:00
|
|
|
scores = self.reranking_function.predict(
|
|
|
|
[(query, doc.page_content) for doc in documents]
|
|
|
|
)
|
|
|
|
else:
|
2024-04-27 19:38:50 +00:00
|
|
|
query_embedding = self.embedding_function(query)
|
|
|
|
document_embedding = self.embedding_function(
|
2024-04-22 23:36:46 +00:00
|
|
|
[doc.page_content for doc in documents]
|
|
|
|
)
|
|
|
|
scores = util.cos_sim(query_embedding, document_embedding)[0]
|
|
|
|
|
|
|
|
docs_with_scores = list(zip(documents, scores.tolist()))
|
|
|
|
if self.r_score:
|
|
|
|
docs_with_scores = [
|
|
|
|
(d, s) for d, s in docs_with_scores if s >= self.r_score
|
|
|
|
]
|
|
|
|
|
2024-04-29 17:15:58 +00:00
|
|
|
result = sorted(docs_with_scores, key=operator.itemgetter(1), reverse=True)
|
2024-04-22 23:36:46 +00:00
|
|
|
final_results = []
|
|
|
|
for doc, doc_score in result[: self.top_n]:
|
|
|
|
metadata = doc.metadata
|
|
|
|
metadata["score"] = doc_score
|
|
|
|
doc = Document(
|
|
|
|
page_content=doc.page_content,
|
|
|
|
metadata=metadata,
|
|
|
|
)
|
|
|
|
final_results.append(doc)
|
|
|
|
return final_results
|