docs: fix two references left stale by the Layering removal

Self-review sweep on the section NAME (not just anchors) found: the docs
index row in docs/AGENTS.md still advertised 'layering' among
architecture.md's contents, and the extract-example-app-packages RFC cited
'docs/architecture.md § Layering' for the dependency rule, which now lives
under § Service map.

docs/AGENTS.md

@@ -10,7 +10,7 @@ Every fact has exactly one home — the tier whose job it is — and every other
 |---|---|---|
 | Root `AGENTS.md` | Standing orders: rules an agent needs in context in every session, one to three lines each, linking its home | Stories, worked examples, situational procedures, anything restated from a linked home |
 | Subtree `AGENTS.md` (`packages/`, `examples/`, `docs/`) | Orders specific to that subtree | Repo-wide rules the root file already carries |
-| [architecture.md](architecture.md) | The system map: layering, services, the loop, extension seams — read before changing `packages/` | Type shapes (→ core-data-structures), per-package detail (→ package READMEs), decision rationale (→ RFCs), implementation-status annotations |
+| [architecture.md](architecture.md) | The system map: services, the loop, extension seams — read before changing `packages/` | Type shapes (→ core-data-structures), per-package detail (→ package READMEs), decision rationale (→ RFCs), implementation-status annotations |
 | [core-data-structures/](core-data-structures/core.md) | The type catalog: literal shapes and semantics of the spine and seam vocabulary | Behavior narration (→ architecture.md) |
 | [rfc/](rfc/README.md) | Decision records: the why and the what-was-given-up; `implemented/` RFCs describe shipped reality in present tense | Migration plans, test checklists, and spec-speak ("should…") once the decision has shipped |
 | [postmortem/](postmortem/README.md) | Incident stories — the only tier where war-story narrative belongs | — |

docs/rfc/implemented/architecture/2026-06-20-extract-example-app-packages.md

@@ -12,7 +12,7 @@ The deeper problem was a **coupled front-door cluster** that lived at the leaf w
 
 Each example is now **mostly an invocation of an app package**, splitting the wiring along the existing [interface / implementation / consumer seam](2026-06-13-capability-seams.md): the **app package owns the composition**, the leaf `cordis.yml` owns only the **swappable choices** (which LLM adapter, which bash executor, model, prompt, persistence root).
 
-- **`@deepseek-ai/dsh-agent-core`** ([packages/core/agent-core](../../../../packages/core/agent-core)) — a Cordis bundle plugin for the providerless, executor-less, UI-less spine: `timer` + `llm` + sessions + system-prompt + tools + agents + invariants + `tool-bash` + `agent-loop`, mounted as child plugins inside its `apply(ctx)` via `ctx.plugin(...)`. This is the old `base-core.yml` **minus** `bash-local`, **plus** `timer` and the loop, as code instead of a YAML include. The bundle **forwards** `agent-loop`'s `agents` list as its own config (`export const Config = AgentLoop.Config`, default `[]`, the existing `AgentLoop.Config` shape in [packages/core/agent-loop/src/index.ts](../../../../packages/core/agent-loop/src/index.ts)) — so each app supplies its own pre-created agents. This is precisely the reason the old `base-core.yml` gave for keeping `agent-loop` *out* of the shared core ("the examples disagree — stdio needs a pre-created `main`, acp needs none"); forwarding the config dissolves that objection — the loop is shared, the agents list is per-app. The bundle children register into the root service store, so a leaf-mounted sibling (the adapter, the executor) sees them exactly as a nested `plugin-include` subtree's services were seen before. Depending on the CONCRETE `dsh-agent-loop` (not just the `dsh-agent` interface) is deliberate and is the sanctioned exception to the "extension plugins depend on interfaces, never on the concrete loop" rule (packages/README.md, docs/architecture.md § Layering): the rule constrains plugins that EXTEND the system, whereas this bundle's whole job is to COMPOSE the concrete spine. Swapping the loop means publishing a different bundle, not rewiring every extension.
+- **`@deepseek-ai/dsh-agent-core`** ([packages/core/agent-core](../../../../packages/core/agent-core)) — a Cordis bundle plugin for the providerless, executor-less, UI-less spine: `timer` + `llm` + sessions + system-prompt + tools + agents + invariants + `tool-bash` + `agent-loop`, mounted as child plugins inside its `apply(ctx)` via `ctx.plugin(...)`. This is the old `base-core.yml` **minus** `bash-local`, **plus** `timer` and the loop, as code instead of a YAML include. The bundle **forwards** `agent-loop`'s `agents` list as its own config (`export const Config = AgentLoop.Config`, default `[]`, the existing `AgentLoop.Config` shape in [packages/core/agent-loop/src/index.ts](../../../../packages/core/agent-loop/src/index.ts)) — so each app supplies its own pre-created agents. This is precisely the reason the old `base-core.yml` gave for keeping `agent-loop` *out* of the shared core ("the examples disagree — stdio needs a pre-created `main`, acp needs none"); forwarding the config dissolves that objection — the loop is shared, the agents list is per-app. The bundle children register into the root service store, so a leaf-mounted sibling (the adapter, the executor) sees them exactly as a nested `plugin-include` subtree's services were seen before. Depending on the CONCRETE `dsh-agent-loop` (not just the `dsh-agent` interface) is deliberate and is the sanctioned exception to the "extension plugins depend on interfaces, never on the concrete loop" rule (packages/README.md, docs/architecture.md § Service map): the rule constrains plugins that EXTEND the system, whereas this bundle's whole job is to COMPOSE the concrete spine. Swapping the loop means publishing a different bundle, not rewiring every extension.
 - **`@deepseek-ai/dsh-stdio-agent`** ([packages/ui/stdio-agent](../../../../packages/ui/stdio-agent)) and **`@deepseek-ai/dsh-acp-agent`** ([packages/ui/acp-agent](../../../../packages/ui/acp-agent)) — app packages, each consuming `dsh-agent-core` and **baking in its coupled front-door cluster**: stdio = `ui-stdio` + console logger + a pre-created `main`; acp = the `acp` bridge + JSONL persistence + **no stdout logger** + no pre-created agents. The leaf no longer carries the cluster, so it has no logger entry to copy wrong by default — the common stdout-purity mistake loses its foothold. (A leaf can still *add* a sibling logger entry — a package cannot forbid what a leaf author writes — so the rule "never add a stdout logger to an ACP leaf" stays documented at the leaf; what changed is that the default leaf has nothing to get wrong.) They land under the existing `ui` group alongside `acp`, so no new package group (and no `tsconfig`/`packages/README` group plumbing) was needed.
 - **`start.ts` is gone.** Each app package exposes a `bin` (`dsh-stdio-agent` / `dsh-acp-agent`); the `demo:*` scripts invoke it (e.g. `dsh-stdio-agent ./cordis.yml`). The Loader-boot tail, `.env` loading, and fail-loud guards live in the shared [`@deepseek-ai/dsh-app-boot`](../../../../packages/ui/app-boot) package (unit-tested under the per-file coverage gate — see [share the app bins' boot glue](../simplification/2026-07-04-share-app-bin-boot-glue.md)); each bin is a thin self-executing composition over those helpers plus its app-specific lifecycle (the ACP bin: snapshot-mode selection and stdin-dispose). The `bin.ts` files themselves stay coverage-excluded (self-executing CLI entries, like the old `start.ts`) and are driven by the keyless Loader-path tests.
 - **Each leaf `cordis.yml` collapses** to backends + config: the LLM adapter (`llm-deepseek` with apiKey/models, or `llm-replay`), the bash executor (`bash-local`), `hmr` for the stdio demos (see the amendment below), and one app entry carrying the app's config (model, system prompt, persistence root — surfaced as the app package's own `Config`, which routes each value to wherever the app wires it: stdio onto its pre-created agent, acp onto the bridge plugin).