diff --git a/.kilo/commands/evaluate.md b/.kilo/commands/evaluate.md
new file mode 100644
index 0000000..2c35bc2
--- /dev/null
+++ b/.kilo/commands/evaluate.md
@@ -0,0 +1,58 @@
+---
+description: Evaluate agent performance for completed issue
+mode: subagent
+model: ollama-cloud/gpt-oss:120b
+color: "#F59E0B"
+---
+
+# Evaluate Command
+
+Generate performance evaluation report for a completed pipeline run.
+
+## Usage
+
+```
+/evaluate <issue-number>
+```
+
+## Process
+
+1. Fetch issue comments
+2. Parse agent execution logs
+3. Calculate scores per agent
+4. Generate recommendations
+5. Post evaluation to Gitea
+
+## Scoring Criteria
+
+| Criterion | Weight |
+|-----------|--------|
+| Code Quality | 30% |
+| Test Coverage | 20% |
+| Review Iterations | 20% |
+| Time to Complete | 15% |
+| Security Issues | 15% |
+
+## Output Format
+
+```markdown
+## 🟢 Pipeline Evaluation Report
+
+**Issue**: #42
+**Overall Score**: 8.2/10
+**Duration**: 2.5h
+**Iterations**: 2
+
+### Agent Scores
+
+| Agent | Score | Notes |
+|-------|-------|-------|
+| 🟢 requirement-refiner | 9/10 | Clear acceptance criteria |
+| 🟢 lead-developer | 8/10 | Clean implementation |
+| 🟡 code-skeptic | 7/10 | Found 2 minor issues |
+| 🟢 the-fixer | 9/10 | Fixed issues quickly |
+
+### Recommendations
+
+- Consider optimizing code-skeptic prompt (score < 8)
+```
\ No newline at end of file
diff --git a/.kilo/commands/pipeline.md b/.kilo/commands/pipeline.md
new file mode 100644
index 0000000..a437c55
--- /dev/null
+++ b/.kilo/commands/pipeline.md
@@ -0,0 +1,139 @@
+---
+description: Run full agent pipeline for an issue with Gitea logging
+---
+
+# Pipeline Workflow
+
+You are orchestrating the full agent pipeline for issue #{issue_number}. Execute each step sequentially, logging progress to Gitea.
+
+## Parameters
+
+- `issue_number`: The issue number to process (ask if not provided)
+
+## Step 1: Fetch Issue Context
+
+1. Read the issue from Gitea using `bash`:
+   ```bash
+   gh issue view {issue_number} --json title,body,labels,assignees
+   ```
+2. Parse the issue body for:
+   - Acceptance criteria (checkboxes)
+   - Referenced files
+   - Current status label
+
+## Step 2: Check for Duplicates
+
+1. Use `grep` to search git history for similar issues:
+   ```bash
+   git log --all --oneline --grep="{keywords from title}"
+   ```
+2. Report findings as Gitea comment
+
+## Step 3: Route Based on Status
+
+Based on the issue status label, invoke the appropriate agent using Task tool:
+
+| Status Label | Agent to Invoke |
+|-------------|-----------------|
+| `status: new` | `@requirement-refiner` |
+| `status: planned` | `@history-miner` |
+| `status: researching` | `@system-analyst` |
+| `status: designed` | `@sdet-engineer` |
+| `status: testing` | `@lead-developer` |
+| `status: implementing` | `@code-skeptic` |
+| `status: reviewing` | `@performance-engineer` |
+| `status: fixing` | `@the-fixer` |
+| `status: releasing` | `@release-manager` |
+| `status: evaluated` | `@prompt-optimizer` |
+
+## Step 4: Execute Agent Task
+
+1. Use Task tool to invoke the agent:
+   ```
+   Use the Task tool with subagent_type: "lead-developer" (or appropriate agent)
+   prompt: "Implement the following: {issue details}"
+   ```
+
+2. After agent completes, check result:
+   - If successful → proceed to next agent in workflow
+   - If issues found → route to `@the-fixer`
+
+## Step 5: Log Progress to Gitea
+
+After each agent completes, post comment:
+```bash
+gh issue comment {issue_number} --body "## ✅ {agent_name} completed
+
+**Score**: {score}/10
+**Duration**: {duration}
+**Next**: {next_agent}
+
+{agent_notes}"
+```
+
+## Step 6: Update Status Label
+
+```bash
+gh issue edit {issue_number} --remove-label "status: {old_status}" --add-label "status: {new_status}"
+```
+
+## Step 7: Continue Pipeline
+
+Loop through steps 3-6 until status is `status: completed`.
+
+## Step 8: Generate Evaluation Report
+
+When pipeline completes, generate final report:
+
+```markdown
+## 🟢 Pipeline Evaluation Report
+
+**Issue**: #{issue_number}
+**Overall Score**: {average}/10
+**Duration**: {total_hours}h
+**Iterations**: {count}
+
+### Agent Scores
+
+| Agent | Score | Notes |
+|-------|-------|-------|
+| {agent} | {score}/10 | {notes} |
+
+### Recommendations
+
+- {recommendation_1}
+- {recommendation_2}
+```
+
+## Workflow Graph
+
+```
+new → requirement-refiner → planned
+planned → history-miner → researching
+researching → system-analyst → designed
+designed → sdet-engineer → testing
+testing → lead-developer → implementing
+implementing → code-skeptic → reviewing
+reviewing → performance-engineer → perf-check
+perf-check → security-auditor → security-check
+security-check → release-manager → releasing
+releasing → evaluator → evaluated
+evaluated → prompt-optimizer → completed
+```
+
+On failure at any step → route to `the-fixer` → back to `code-skeptic`
+
+## Environment
+
+Required environment variables:
+```
+GITEA_API_URL=https://git.softuniq.eu/api/v1
+GITEA_TOKEN=your-token
+```
+
+## Error Handling
+
+If any step fails:
+1. Post error comment to issue
+2. Add label `status: blocked`
+3. Ask user for guidance using `question` tool
\ No newline at end of file
diff --git a/.kilo/commands/status.md b/.kilo/commands/status.md
new file mode 100644
index 0000000..dabab7c
--- /dev/null
+++ b/.kilo/commands/status.md
@@ -0,0 +1,41 @@
+---
+description: Check pipeline status for an issue
+mode: subagent
+model: qwen/qwen3.6-plus:free
+color: "#3B82F6"
+---
+
+# Status Command
+
+Check current pipeline status for an issue.
+
+## Usage
+
+```
+/status <issue-number>
+```
+
+## Output
+
+```
+📊 Issue #42 Pipeline Status
+
+Current State: implementing
+Current Agent: @LeadDeveloper
+
+Progress:
+✅ requirement-refiner (completed, score: 9)
+✅ history-miner (completed, score: 8)  
+✅ system-analyst (completed, score: 8)
+✅ sdet-engineer (completed, tests written)
+🔄 lead-developer (in progress)
+
+Next Steps:
+1. Complete implementation
+2. Code review by @CodeSkeptic
+3. Performance check
+4. Security audit
+5. Release
+
+Estimated Completion: 1.5h
+```
\ No newline at end of file
diff --git a/.kilo/kilo.jsonc b/.kilo/kilo.jsonc
index 2cde485..076cf7a 100644
--- a/.kilo/kilo.jsonc
+++ b/.kilo/kilo.jsonc
@@ -3,5 +3,17 @@
   "instructions": [".kilo/rules/*.md"],
   "skills": {
     "paths": [".kilo/skills"]
+  },
+  "agent": {
+    "pipeline-runner": {
+      "description": "Runs agent pipeline with Gitea logging",
+      "mode": "subagent",
+      "permission": {
+        "read": "allow",
+        "write": "allow",
+        "bash": "allow",
+        "task": "allow"
+      }
+    }
   }
 }
\ No newline at end of file
diff --git a/AGENTS.md b/AGENTS.md
index 73ef9a9..eae4ca4 100644
--- a/AGENTS.md
+++ b/AGENTS.md
@@ -1,46 +1,186 @@
 # Kilo Code Agents Reference
 
-## Commands (Quick Actions)
+This file configures AI agent behavior for the APAW project - a self-improving code pipeline with Gitea logging.
 
-| Command | Description | Model |
+## Pipeline Workflow
+
+The main workflow is `/pipeline` - use it to process issues through all agents automatically.
+
+```
+User: /pipeline 42
+Agent: Runs full pipeline for issue #42 with Gitea logging
+```
+
+## Commands (Slash Commands)
+
+| Command | Description | Usage |
 |---------|-------------|-------|
-| `/plan` | Creates detailed task plans | ollama-cloud/qwen3-coder:480b |
-| `/ask` | Answers codebase questions | openai/qwen3-32b |
-| `/debug` | Analyzes and fixes bugs | ollama-cloud/gpt-oss:20b |
-| `/code` | Quick code generation | ollama-cloud/qwen3-coder:480b |
+| `/pipeline <issue>` | Run full agent pipeline for issue | `/pipeline 42` |
+| `/status <issue>` | Check pipeline status for issue | `/status 42` |
+| `/evaluate <issue>` | Generate performance report | `/evaluate 42` |
+| `/plan` | Creates detailed task plans | `/plan feature X` |
+| `/ask` | Answers codebase questions | `/ask how does auth work` |
+| `/debug` | Analyzes and fixes bugs | `/debug error in login` |
+| `/code` | Quick code generation | `/code add validation` |
 
-## Pipeline Agents
+## Pipeline Agents (Subagents)
 
-| Agent | Role | Model |
-|-------|------|-------|
-| `@RequirementRefiner` | Converts vague ideas to strict User Stories | ollama-cloud/kimi-k2-thinking |
-| `@HistoryMiner` | Finds duplicates and past solutions in git | ollama-cloud/gpt-oss:20b |
-| `@SystemAnalyst` | Designs technical specifications | qwen/qwen3.6-plus:free |
-| `@SDETEngineer` | Writes tests following TDD | ollama-cloud/qwen3-coder:480b |
-| `@LeadDeveloper` | Primary code writer | ollama-cloud/qwen3-coder:480b |
-| `@FrontendDeveloper` | UI implementation with multimodal | ollama-cloud/kimi-k2.5 |
-| `@CodeSkeptic` | Adversarial code reviewer | ollama-cloud/minimax-m2.5 |
-| `@TheFixer` | Iteratively fixes bugs | ollama-cloud/minimax-m2.5 |
-| `@PerformanceEngineer` | Reviews for performance issues | ollama-cloud/nemotron-3-super |
-| `@SecurityAuditor` | Scans for vulnerabilities | ollama-cloud/kimi-k2.5 |
-| `@ReleaseManager` | Git operations and deployments | ollama-cloud/qwen3-coder:480b |
-| `@Evaluator` | Scores agent effectiveness | ollama-cloud/gpt-oss:120b |
-| `@PromptOptimizer` | Improves agent prompts | qwen/qwen3.6-plus:free |
-| `@ProductOwner` | Manages issue checklists | qwen/qwen3.6-plus:free |
-| `@Orchestrator` | Routes tasks between agents | ollama-cloud/glm-5 |
-| `@AgentArchitect` | Manages agent network per Kilo.ai spec | qwen/qwen3.6-plus:free |
+These agents are invoked automatically by `/pipeline` or manually via `@mention`:
 
-**Note:** For AgentArchitect, use `subagent_type: "system-analyst"` with prompt "You are Agent Architect..." (workaround for unsupported agent-architect type).
+| Agent | Role | When Invoked |
+|-------|------|--------------|
+| `@requirement-refiner` | Converts ideas to User Stories | Issue status: new |
+| `@history-miner` | Finds duplicates in git | Status: planned |
+| `@system-analyst` | Designs specifications | Status: researching |
+| `@sdet-engineer` | Writes tests (TDD) | Status: designed |
+| `@lead-developer` | Implements code | Status: testing (tests fail) |
+| `@frontend-developer` | UI implementation | When UI work needed |
+| `@code-skeptic` | Adversarial review | Status: implementing |
+| `@the-fixer` | Fixes issues | When review fails |
+| `@performance-engineer` | Performance review | After code-skeptic |
+| `@security-auditor` | Security audit | After performance |
+| `@release-manager` | Git operations | Status: releasing |
+| `@evaluator` | Scores effectiveness | Status: evaluated |
+| `@prompt-optimizer` | Improves prompts | When score < 7 |
 
-## Workflow
+## Workflow State Machine
 
 ```
-[new] → HistoryMiner → [researching] → SystemAnalyst → [designing] → SDET
-                                                                          ↓
-[testing] → LeadDev → CodeSkeptic → [fail? TheFixer] → [pass] → Performance → Security → Release → Evaluator
+[new] 
+  ↓ requirement-refiner
+[planned] 
+  ↓ history-miner
+[researching] 
+  ↓ system-analyst
+[designed] 
+  ↓ sdet-engineer (writes failing tests)
+[testing] 
+  ↓ lead-developer (makes tests pass)
+[implementing] 
+  ↓ code-skeptic (review)
+[reviewing] ──[fail]──→ [fixing] ──→ [reviewing]
+  ↓ [pass]
+[perf-check] 
+  ↓ performance-engineer
+[security-check] 
+  ↓ security-auditor
+[releasing] 
+  ↓ release-manager
+[evaluated] 
+  ↓ evaluator
+  ├── [score ≥ 7] → [completed]
+  └── [score < 7] → prompt-optimizer → [completed]
 ```
 
-## Architecture Documentation
+## Gitea Integration
 
-- **KILO_SPEC.md** - Complete Kilo.ai specification for agent architecture
-- **agent-architect.md** - Agent management and network configuration
\ No newline at end of file
+### Status Labels
+
+Pipeline uses Gitea labels to track progress:
+- `status: new` → `status: planned` → `status: researching` → ...
+- Agents add/remove labels automatically
+
+### Performance Logging
+
+Each agent logs to Gitea issue comments:
+```markdown
+## ✅ lead-developer completed
+
+**Score**: 8/10
+**Duration**: 1.2h
+**Files**: src/auth.ts, src/user.ts
+
+### Notes
+- Clean implementation
+- Follows existing patterns
+- Tests passing
+```
+
+### Efficiency Tracking
+
+Scores saved to `.kilo/logs/efficiency_score.json`:
+```json
+{
+  "version": "1.0",
+  "history": [
+    {
+      "issue": 42,
+      "date": "2024-01-02T10:00:00Z",
+      "agents": {
+        "lead-developer": 8,
+        "code-skeptic": 7,
+        "the-fixer": 9
+      },
+      "iterations": 2,
+      "duration_hours": 1.5
+    }
+  ]
+}
+```
+
+## Manual Agent Invocation
+
+```typescript
+// Use Task tool to invoke subagent
+Task tool with:
+  subagent_type: "lead-developer"
+  prompt: "Implement authentication for issue #42"
+```
+
+Or via `@mention`:
+```
+@lead-developer implement authentication flow
+```
+
+## Environment Variables
+
+Required for Gitea integration:
+```bash
+GITEA_API_URL=https://git.softuniq.eu/api/v1
+GITEA_TOKEN=your-token-here
+```
+
+## Self-Improvement Cycle
+
+1. **Pipeline runs** for each issue
+2. **Evaluator scores** each agent (1-10)
+3. **Low scores (<7)** trigger prompt-optimizer
+4. **Prompt optimizer** analyzes failures and improves prompts
+5. **New prompts** saved to `.kilo/agents/`
+6. **Next run** uses improved prompts
+
+## Architecture Files
+
+| File | Purpose |
+|------|---------|
+| `AGENTS.md` | This file - main config |
+| `.kilo/agents/*.md` | Agent definitions with prompts |
+| `.kilo/commands/*.md` | Workflow commands |
+| `.kilo/rules/*.md` | Custom rules loaded globally |
+| `.kilo/skills/` | Skill modules |
+| `src/kilocode/` | TypeScript API for programmatic use |
+
+## Using the TypeScript API
+
+```typescript
+import { 
+  PipelineRunner, 
+  GiteaClient, 
+  decideRouting 
+} from './src/kilocode/index.js'
+
+const runner = await createPipelineRunner({
+  giteaToken: process.env.GITEA_TOKEN
+})
+
+await runner.run({ issueNumber: 42 })
+```
+
+## Code Style
+
+- Use TypeScript for new files
+- Follow existing patterns
+- Write tests before code (TDD)
+- Keep functions under 50 lines
+- Use early returns
+- No comments unless explicitly requested
\ No newline at end of file
diff --git a/README.md b/README.md
index d5b7339..78078c6 100644
--- a/README.md
+++ b/README.md
@@ -64,18 +64,19 @@
 │   │   └── global.md                       # Глобальные правила
 │   └── logs/
 │       └── efficiency_score.json           # История оценок
-└── packages/
-    └── opencode/
-        └── src/
-            └── kilocode/
-                └── agent-manager/          # TypeScript-интеграция с KiloCode
-                    ├── index.ts            # Загрузчик конфигурации агентов
-                    ├── workflow.ts         # State Machine пайплайна
-                    ├── router.ts           # Маршрутизатор между агентами
-                    ├── prompt-loader.ts    # Динамическая загрузка промптов
-                    ├── git-ops.ts          # Git-операции (история, коммиты)
-                    ├── evaluator.ts        # Логика оценки эффективности
-                    └── types.ts            # TypeScript-типы системы
+├── src/
+│   └── kilocode/
+│       ├── index.ts                    # Точка входа модуля
+│       └── agent-manager/              # TypeScript-интеграция с KiloCode
+│           ├── index.ts                 # Загрузчик конфигурации агентов
+│           ├── workflow.ts              # State Machine пайплайна
+│           ├── router.ts                # Маршрутизатор между агентами
+│           ├── prompt-loader.ts         # Динамическая загрузка промптов
+│           ├── git-ops.ts               # Git-операции (история, коммиты)
+│           ├── evaluator.ts             # Логика оценки эффективности
+│           ├── gitea-client.ts          # Gitea API для логирования
+│           ├── pipeline-runner.ts       # Оркестратор пайплайна
+│           └── types.ts                 # TypeScript-типы системы
 ```
 
 ---
@@ -356,14 +357,188 @@ chore(ai-brain): optimize Lead Dev prompt based on Issue #142 failures
 
 ---
 
+## KiloCode Workflows Integration
+
+Проект интегрирован с **KiloCode Workflows** (slash commands):
+
+### Доступные команды
+
+| Команда | Описание | Пример |
+|---------|----------|--------|
+| `/pipeline <issue>` | Запуск полного пайплайна | `/pipeline 42` |
+| `/status <issue>` | Проверка статуса пайплайна | `/status 42` |
+| `/evaluate <issue>` | Генерация отчёта эффективности | `/evaluate 42` |
+| `/plan` | Создание детального плана | `/plan feature X` |
+| `/ask` | Вопросы по кодовой базе | `/ask how does auth work` |
+| `/debug` | Анализ и исправление багов | `/debug error in login` |
+| `/code` | Быстрая генерация кода | `/code add validation` |
+
+### Как использовать Pipeline
+
+1. Откройте проект в VS Code с плагином KiloCode
+2. Создайте Issue в Gitea
+3. Введите `/pipeline <номер-issue>` в чате KiloCode
+4. Пайплайн автоматически:
+   - Получит контекст Issue
+   - Проверит дубликаты в git
+   - Маршрутизирует через агентов по статусу
+   - Логирует прогресс в комментарии Gitea
+   - Сгенерирует итоговый отчёт
+
+### Workflow файлы
+
+| Файл | Назначение |
+|------|------------|
+| `.kilo/commands/pipeline.md` | Основной workflow пайплайна |
+| `.kilo/commands/status.md` | Проверка статуса |
+| `.kilo/commands/evaluate.md` | Оценка эффективности |
+| `.kilo/agents/*.md` | Определения агентов (subagents) |
+| `.kilo/rules/*.md` | Правила кодирования |
+| `.kilo/skills/gitea/` | Gitea integration skill |
+
+### Прямой вызов агентов
+
+Агентов можно вызывать напрямую через `@mention`:
+
+```
+@lead-developer implement authentication flow
+@code-skeptic review the auth module
+@security-auditor check for vulnerabilities
+```
+
+---
+
 ## Технический стек
 
 - **Оркестрация**: Node.js / TypeScript (Agent Manager)
-- **Интеграция**: KiloCode VS Code Extension
+- **Интеграция**: KiloCode VS Code Extension / Claude Code
 - **Версионирование**: Gitea + Git Flow
-- **Язык разработки**: Go / Node.js (основные проекты)
+- **Язык разработки**: TypeScript / Node.js / Go
 - **Тестирование**: TDD (Red-Green-Refactor)
 
 ---
 
+## Agent Manager API
+
+Новый модуль `src/kilocode/` предоставляет программный API для работы с пайплайном:
+
+### Установка
+
+```bash
+bun install
+bun run build
+```
+
+### Использование
+
+```typescript
+import { 
+  PipelineRunner, 
+  GiteaClient, 
+  decideRouting,
+  WORKFLOW_GRAPH,
+  type AgentRole,
+  type IssueStatus 
+} from './src/kilocode/index.js'
+
+// Инициализация пайплайна
+const runner = await createPipelineRunner({
+  giteaToken: process.env.GITEA_TOKEN,
+  giteaApiUrl: 'https://git.softuniq.eu/api/v1',
+  efficiencyThreshold: 7,
+  autoLog: true
+})
+
+// Запуск пайплайна для Issue
+const result = await runner.run({
+  issueNumber: 42,
+  files: ['src/auth.ts', 'src/user.ts'],
+  testResults: { passed: 5, failed: 0 }
+})
+
+// Определение следующего агента
+const decision = decideRouting({
+  status: 'implementing',
+  labels: ['status: implemented'],
+  checklists: { completed: 3, total: 5 },
+  comments: [],
+  files: ['src/auth.ts']
+})
+
+console.log(decision.nextAgent) // 'code-skeptic'
+```
+
+### Gitea интеграция
+
+```typescript
+const client = new GiteaClient({
+  apiUrl: 'https://git.softuniq.eu/api/v1',
+  token: process.env.GITEA_TOKEN
+})
+
+client.setRepository('UniqueSoft', 'APAW')
+
+// Получить Issue
+const issue = await client.getIssue(42)
+
+// Установить статус
+await client.setStatus(42, 'implementing')
+
+// Добавить комментарий
+await client.createComment(42, {
+  body: '## ✅ Implementation Complete\n\nAll tests passed.'
+})
+
+// Закрыть Issue
+await client.closeIssue(42)
+```
+
+### Логирование эффективности
+
+```typescript
+await runner.logEvaluation(42, [
+  { agent: 'lead-developer', score: 8, notes: 'Clean implementation' },
+  { agent: 'code-skeptic', score: 7, notes: 'Found 2 minor issues' },
+  { agent: 'the-fixer', score: 9, notes: 'Fixed issues quickly', iterations: 1 }
+], 2, 1.5)
+```
+
+---
+
+## Self-Improving Pipeline
+
+Система автоматически логирует эффективность каждого агента в Gitea Issues:
+
+1. **Pipeline Runner** запускается для каждой задачи
+2. Каждый агент логирует свой прогресс в комментарии Issue
+3. **Evaluator** оценивает эффективность агентов (1-10)
+4. **Prompt Optimizer** получает агентов с низкими оценками (<7)
+5. Промпты автоматически улучшаются на основе анализа
+
+Журнал эффективности сохраняется в `.kilo/logs/efficiency_score.json` для аналитики.
+
+---
+
+## Переменные окружения
+
+```bash
+# Gitea API
+GITEA_API_URL=https://git.softuniq.eu/api/v1
+GITEA_TOKEN=your-token-here
+```
+
+---
+
+## Удаление дубликатов
+
+Если в проекте есть старые файлы в `packages/opencode/`, выполните:
+
+```bash
+sudo rm -rf packages/opencode/src/kilocode/
+```
+
+Код интегрирован в `src/kilocode/`.
+
+---
+
 *Разработано в рамках проекта APAW (Automatic Programmers Agent Workflow) — 2026*
diff --git a/cleanup-packages.sh b/cleanup-packages.sh
new file mode 100755
index 0000000..19e0bcd
--- /dev/null
+++ b/cleanup-packages.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+# Cleanup script to remove duplicate files in packages/opencode
+# The agent-manager code is now integrated into src/kilocode/
+# Run with: sudo ./cleanup-packages.sh
+
+echo "Removing duplicate files from packages/opencode..."
+
+# Remove the old location (files are now in src/kilocode/agent-manager/)
+rm -rf /opt/Projects/APAW/packages/opencode/src/kilocode/
+
+# Remove empty directories
+rmdir /opt/Projects/APAW/packages/opencode/src/ 2>/dev/null || true
+rmdir /opt/Projects/APAW/packages/opencode/ 2>/dev/null || true
+rmdir /opt/Projects/APAW/packages/ 2>/dev/null || true
+
+echo "Cleanup complete!"
+echo ""
+echo "Agent manager is now located at:"
+echo "  src/kilocode/agent-manager/ - Core modules"
+echo "  src/kilocode/index.ts       - Entry point"
+echo ""
+echo "Usage:"
+echo "  import { PipelineRunner, GiteaClient } from './src/kilocode/index.js'"
\ No newline at end of file
diff --git a/fix-permissions.sh b/fix-permissions.sh
index c32cbef..da9c2e1 100755
--- a/fix-permissions.sh
+++ b/fix-permissions.sh
@@ -2,5 +2,17 @@
 # Fix permissions for root-owned files
 # Run with: sudo ./fix-permissions.sh
 
-chown -R swp:swp /opt/Projects/APAW/packages/opencode/src/kilocode/agent-manager/
-echo "Permissions fixed"
\ No newline at end of file
+echo "Fixing permissions..."
+
+# Fix ownership for all project directories
+chown -R swp:swp /opt/Projects/APAW/packages/ 2>/dev/null || true
+chown -R swp:swp /opt/Projects/APAW/src/ 2>/dev/null || true
+chown -R swp:swp /opt/Projects/APAW/.kilo/ 2>/dev/null || true
+chown swp:swp /opt/Projects/APAW/*.sh 2>/dev/null || true
+chown swp:swp /opt/Projects/APAW/package.json 2>/dev/null || true
+chown swp:swp /opt/Projects/APAW/tsconfig.json 2>/dev/null || true
+
+# Make scripts executable
+chmod +x /opt/Projects/APAW/*.sh 2>/dev/null || true
+
+echo "Permissions fixed!"
\ No newline at end of file
diff --git a/package.json b/package.json
new file mode 100644
index 0000000..fa1a084
--- /dev/null
+++ b/package.json
@@ -0,0 +1,46 @@
+{
+  "name": "apaw",
+  "version": "1.0.0",
+  "description": "Self-improving code pipeline with agent management and Gitea logging",
+  "type": "module",
+  "main": "./dist/kilocode/index.js",
+  "types": "./dist/kilocode/index.d.ts",
+  "exports": {
+    ".": {
+      "import": "./dist/kilocode/index.js",
+      "types": "./dist/kilocode/index.d.ts"
+    },
+    "./agent-manager": {
+      "import": "./dist/kilocode/agent-manager/index.js",
+      "types": "./dist/kilocode/agent-manager/index.d.ts"
+    }
+  },
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsc --watch",
+    "clean": "rm -rf dist",
+    "typecheck": "tsc --noEmit",
+    "test": "bun test"
+  },
+  "dependencies": {
+    "zod": "^3.24.1"
+  },
+  "devDependencies": {
+    "@types/bun": "^1.1.6",
+    "@types/node": "^20.10.0",
+    "typescript": "^5.4.5"
+  },
+  "keywords": [
+    "agent",
+    "pipeline",
+    "workflow",
+    "gitea",
+    "automation",
+    "self-improving",
+    "kilocode"
+  ],
+  "license": "MIT",
+  "workspaces": [
+    ".kilo"
+  ]
+}
\ No newline at end of file
diff --git a/packages/opencode/src/kilocode/agent-manager/evaluator.ts b/src/kilocode/agent-manager/evaluator.ts
similarity index 97%
rename from packages/opencode/src/kilocode/agent-manager/evaluator.ts
rename to src/kilocode/agent-manager/evaluator.ts
index 9d154be..0a045ee 100644
--- a/packages/opencode/src/kilocode/agent-manager/evaluator.ts
+++ b/src/kilocode/agent-manager/evaluator.ts
@@ -1,4 +1,5 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Evaluator - scores agent performance
 
 import type { AgentRole } from "./index"
 import { saveEfficiencyScore } from "./prompt-loader"
diff --git a/packages/opencode/src/kilocode/agent-manager/git-ops.ts b/src/kilocode/agent-manager/git-ops.ts
similarity index 69%
rename from packages/opencode/src/kilocode/agent-manager/git-ops.ts
rename to src/kilocode/agent-manager/git-ops.ts
index 657da62..4844aea 100644
--- a/packages/opencode/src/kilocode/agent-manager/git-ops.ts
+++ b/src/kilocode/agent-manager/git-ops.ts
@@ -1,6 +1,7 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Git operations using spawn API
 
-import { $ } from "bun"
+import { spawn } from "child_process"
 
 export interface CommitInfo {
   hash: string
@@ -15,15 +16,45 @@ export interface IssueReference {
   action: "closed" | "fixed" | "references" | "related"
 }
 
+async function execGit(args: string[]): Promise<string> {
+  return new Promise((resolve, reject) => {
+    const process = spawn("git", args, { cwd: process.cwd() })
+    
+    let stdout = ""
+    let stderr = ""
+    
+    process.stdout.on("data", (data) => {
+      stdout += data.toString()
+    })
+    
+    process.stderr.on("data", (data) => {
+      stderr += data.toString()
+    })
+    
+    process.on("close", (code) => {
+      if (code === 0) {
+        resolve(stdout)
+      } else {
+        reject(new Error(`Git command failed: git ${args.join(" ")}\n${stderr}`))
+      }
+    })
+    
+    process.on("error", (err) => {
+      reject(err)
+    })
+  })
+}
+
 export async function gitLog(since?: string, until?: string, limit = 50): Promise<CommitInfo[]> {
-  const sinceArg = since ? `--since="${since}"` : ""
-  const untilArg = until ? `--until="${until}"` : ""
-  
-  const format = '%H%n%an%n%ad%n%s%n---'
-  const cmd = `git log ${sinceArg} ${untilArg} -n ${limit} --pretty=format:"${format}" --name-only`
-  
+  const args = ["log"]
+  if (since) args.push(`--since=${since}`)
+  if (until) args.push(`--until=${until}`)
+  args.push("-n", String(limit))
+  args.push("--pretty=format:%H%n%an%n%ad%n%s%n---")
+  args.push("--name-only")
+
   try {
-    const result = await $`git log ${sinceArg} ${untilArg} -n ${limit} --pretty=format:${format} --name-only`.text()
+    const result = await execGit(args)
     return parseGitLog(result)
   } catch (err) {
     return []
@@ -32,7 +63,11 @@ export async function gitLog(since?: string, until?: string, limit = 50): Promis
 
 export async function searchCommits(query: string): Promise<CommitInfo[]> {
   try {
-    const result = await $`git log --all --grep="${query}" --pretty=format:"%H%n%an%n%ad%n%s%n---" --name-only`.text()
+    const result = await execGit([
+      "log", "--all", `--grep=${query}`,
+      "--pretty=format:%H%n%an%n%ad%n%s%n---",
+      "--name-only"
+    ])
     return parseGitLog(result)
   } catch (err) {
     return []
@@ -41,7 +76,11 @@ export async function searchCommits(query: string): Promise<CommitInfo[]> {
 
 export async function getFileHistory(filepath: string, limit = 20): Promise<CommitInfo[]> {
   try {
-    const result = await $`git log -n ${limit} --pretty=format:"%H%n%an%n%ad%n%s%n---" -- ${filepath}`.text()
+    const result = await execGit([
+      "log", "-n", String(limit),
+      "--pretty=format:%H%n%an%n%ad%n%s%n---",
+      "--", filepath
+    ])
     return parseGitLog(result)
   } catch (err) {
     return []
@@ -50,7 +89,9 @@ export async function getFileHistory(filepath: string, limit = 20): Promise<Comm
 
 export async function blameFile(filepath: string): Promise<{ line: number; author: string; date: string }[]> {
   try {
-    const result = await $`git blame --line-porcelain ${filepath}`.text()
+    const result = await execGit([
+      "blame", "--line-porcelain", filepath
+    ])
     return parseBlame(result)
   } catch (err) {
     return []
@@ -78,7 +119,7 @@ export async function findRelatedIssues(keyword: string): Promise<IssueReference
 
 export async function hasCommitWithMessage(message: string): Promise<boolean> {
   try {
-    await $`git log --all --grep="${message}" -n 1`.quiet()
+    await execGit(["log", "--all", `--grep=${message}`, "-n", "1"])
     return true
   } catch (err) {
     return false
diff --git a/src/kilocode/agent-manager/gitea-client.ts b/src/kilocode/agent-manager/gitea-client.ts
new file mode 100644
index 0000000..a94aa10
--- /dev/null
+++ b/src/kilocode/agent-manager/gitea-client.ts
@@ -0,0 +1,259 @@
+// kilocode_change - integrated module
+// Gitea API client for logging agent performance
+
+const GITEA_API_URL = process.env.GITEA_API_URL || "https://git.softuniq.eu/api/v1"
+const GITEA_TOKEN = process.env.GITEA_TOKEN || ""
+
+export interface GiteaConfig {
+  apiUrl: string
+  token: string
+  owner: string
+  repo: string
+}
+
+export interface IssueComment {
+  body: string
+  created_at?: string
+  updated_at?: string
+}
+
+export interface Issue {
+  number: number
+  title: string
+  body: string
+  state: "open" | "closed"
+  labels: Array<{ name: string; color: string }>
+  assignees: Array<{ login: string }>
+  comments: number
+  created_at: string
+  updated_at: string
+}
+
+export interface CreateIssueOptions {
+  title: string
+  body: string
+  labels?: string[]
+  assignees?: string[]
+}
+
+export interface CreateCommentOptions {
+  body: string
+}
+
+export class GiteaClient {
+  private baseUrl: string
+  private token: string
+  private owner: string
+  private repo: string
+
+  constructor(config?: Partial<GiteaConfig>) {
+    this.baseUrl = config?.apiUrl || GITEA_API_URL
+    this.token = config?.token || GITEA_TOKEN
+    this.owner = config?.owner || ""
+    this.repo = config?.repo || ""
+  }
+
+  setRepository(owner: string, repo: string): void {
+    this.owner = owner
+    this.repo = repo
+  }
+
+  private async request<T>(
+    method: string,
+    path: string,
+    body?: unknown
+  ): Promise<T> {
+    const url = `${this.baseUrl}${path}`
+    
+    const headers: Record<string, string> = {
+      "Accept": "application/json",
+      "Content-Type": "application/json",
+    }
+    
+    if (this.token) {
+      headers["Authorization"] = `token ${this.token}`
+    }
+
+    const response = await fetch(url, {
+      method,
+      headers,
+      body: body ? JSON.stringify(body) : undefined,
+    })
+
+    if (!response.ok) {
+      const error = await response.text()
+      throw new Error(`Gitea API error: ${response.status} - ${error}`)
+    }
+
+    return response.json()
+  }
+
+  async getIssue(issueNumber: number): Promise<Issue> {
+    return this.request(
+      "GET",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}`
+    )
+  }
+
+  async createIssue(options: CreateIssueOptions): Promise<Issue> {
+    return this.request(
+      "POST",
+      `/repos/${this.owner}/${this.repo}/issues`,
+      options
+    )
+  }
+
+  async addLabel(issueNumber: number, labelId: number): Promise<void> {
+    await this.request(
+      "POST",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}/labels`,
+      { labels: [labelId] }
+    )
+  }
+
+  async removeLabel(issueNumber: number, labelId: number): Promise<void> {
+    await this.request(
+      "DELETE",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}/labels/${labelId}`
+    )
+  }
+
+  async createComment(issueNumber: number, options: CreateCommentOptions): Promise<{ id: number; body: string }> {
+    return this.request(
+      "POST",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}/comments`,
+      options
+    )
+  }
+
+  async getComments(issueNumber: number): Promise<IssueComment[]> {
+    return this.request(
+      "GET",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}/comments`
+    )
+  }
+
+  async updateComment(issueNumber: number, commentId: number, body: string): Promise<void> {
+    await this.request(
+      "PATCH",
+      `/repos/${this.owner}/${this.repo}/issues/comments/${commentId}`,
+      { body }
+    )
+  }
+
+  async closeIssue(issueNumber: number): Promise<Issue> {
+    return this.request(
+      "PATCH",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}`,
+      { state: "closed" }
+    )
+  }
+
+  async reopenIssue(issueNumber: number): Promise<Issue> {
+    return this.request(
+      "PATCH",
+      `/repos/${this.owner}/${this.repo}/issues/${issueNumber}`,
+      { state: "open" }
+    )
+  }
+
+  async getStatusLabels(issueNumber: number): Promise<string[]> {
+    const issue = await this.getIssue(issueNumber)
+    return issue.labels
+      .filter(l => l.name.startsWith("status:"))
+      .map(l => l.name)
+  }
+
+  async setStatus(issueNumber: number, status: string): Promise<void> {
+    const statusLabel = `status: ${status}`
+    
+    const allLabels = await this.request<Array<{ id: number; name: string }>>(
+      "GET",
+      `/repos/${this.owner}/${this.repo}/labels`
+    )
+    
+    const statusLabels = allLabels.filter(l => l.name.startsWith("status:"))
+    for (const label of statusLabels) {
+      try {
+        await this.removeLabel(issueNumber, label.id)
+      } catch {
+        // Label might not be on issue
+      }
+    }
+    
+    const targetLabel = allLabels.find(l => l.name === statusLabel)
+    if (targetLabel) {
+      await this.addLabel(issueNumber, targetLabel.id)
+    }
+  }
+}
+
+export async function logAgentPerformance(
+  client: GiteaClient,
+  issueNumber: number,
+  agentName: string,
+  score: number,
+  notes: string
+): Promise<void> {
+  const comment = `## Agent Performance Log
+
+| Metric | Value |
+|--------|-------|
+| Agent | ${agentName} |
+| Score | ${score}/10 |
+| Timestamp | ${new Date().toISOString()} |
+
+### Notes
+${notes}
+`
+  
+  await client.createComment(issueNumber, { body: comment })
+}
+
+export async function logPipelineStep(
+  client: GiteaClient,
+  issueNumber: number,
+  step: string,
+  status: "started" | "completed" | "failed",
+  details?: string
+): Promise<void> {
+  const emoji = status === "completed" ? "✅" : status === "failed" ? "❌" : "🔄"
+  
+  const comment = `${emoji} **${step}**: ${status}${details ? `\n\n\`\`\`\n${details}\n\`\`\`` : ""}`
+  
+  await client.createComment(issueNumber, { body: comment })
+}
+
+export async function detectRepository(): Promise<{ owner: string; repo: string }> {
+  try {
+    const { spawn } = await import("child_process")
+    
+    return new Promise((resolve) => {
+      const process = spawn("git", ["remote", "get-url", "origin"], { cwd: process.cwd() })
+      let stdout = ""
+      
+      process.stdout.on("data", (data) => {
+        stdout += data.toString()
+      })
+      
+      process.on("close", () => {
+        // Parse URLs like:
+        // - git@git.softuniq.eu:UniqueSoft/APAW.git
+        // - https://git.softuniq.eu/UniqueSoft/APAW.git
+        const match = stdout.match(/[:/]([^/]+)\/([^/.]+)/)
+        
+        if (match) {
+          resolve({ owner: match[1], repo: match[2] })
+        } else {
+          resolve({ owner: "", repo: "" })
+        }
+      })
+      
+      process.on("error", () => {
+        resolve({ owner: "", repo: "" })
+      })
+    })
+  } catch {
+    return { owner: "", repo: "" }
+  }
+}
\ No newline at end of file
diff --git a/packages/opencode/src/kilocode/agent-manager/index.ts b/src/kilocode/agent-manager/index.ts
similarity index 96%
rename from packages/opencode/src/kilocode/agent-manager/index.ts
rename to src/kilocode/agent-manager/index.ts
index 5070492..3492f57 100644
--- a/packages/opencode/src/kilocode/agent-manager/index.ts
+++ b/src/kilocode/agent-manager/index.ts
@@ -1,4 +1,5 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Agent manager - loads configs, manages workflow
 
 import { readFile, readdir } from "fs/promises"
 import { join } from "path"
diff --git a/src/kilocode/agent-manager/pipeline-runner.ts b/src/kilocode/agent-manager/pipeline-runner.ts
new file mode 100644
index 0000000..0eb3cf8
--- /dev/null
+++ b/src/kilocode/agent-manager/pipeline-runner.ts
@@ -0,0 +1,257 @@
+// kilocode_change - integrated module
+// Pipeline runner - orchestrates agent workflow with Gitea logging
+
+import type { AgentRole } from "./index"
+import { decideRouting, formatAgentTag, type IssueContext, type RoutingDecision } from "./router"
+import { type IssueStatus } from "./workflow"
+import { 
+  saveEfficiencyScore, 
+  type EfficiencyScore,
+  hasLowScore,
+  findPromptOptimizationTargets 
+} from "./prompt-loader"
+import { 
+  calculateOverallScore, 
+  generateRecommendations, 
+  type AgentPerformance,
+  type EvaluationResult 
+} from "./evaluator"
+import { 
+  GiteaClient, 
+  logPipelineStep, 
+  logAgentPerformance,
+  detectRepository 
+} from "./gitea-client"
+
+export interface PipelineConfig {
+  giteaToken?: string
+  giteaApiUrl?: string
+  efficiencyThreshold?: number
+  autoLog?: boolean
+}
+
+export interface PipelineRunOptions {
+  issueNumber: number
+  initialStatus?: IssueStatus
+  files?: string[]
+  testResults?: { passed: number; failed: number }
+}
+
+export interface PipelineResult {
+  success: boolean
+  finalAgent: AgentRole | null
+  finalStatus: string
+  agentsUsed: AgentRole[]
+  totalSteps: number
+  errors: string[]
+}
+
+export class PipelineRunner {
+  private client: GiteaClient
+  private efficiencyThreshold: number
+  private autoLog: boolean
+  private initialized: boolean = false
+
+  constructor(config: PipelineConfig = {}) {
+    this.client = new GiteaClient({
+      token: config.giteaToken,
+      apiUrl: config.giteaApiUrl,
+    })
+    this.efficiencyThreshold = config.efficiencyThreshold ?? 7
+    this.autoLog = config.autoLog ?? true
+  }
+
+  async initialize(): Promise<void> {
+    if (this.initialized) return
+    
+    const { owner, repo } = await detectRepository()
+    this.client.setRepository(owner, repo)
+    this.initialized = true
+  }
+
+  async run(options: PipelineRunOptions): Promise<PipelineResult> {
+    await this.initialize()
+    
+    const agentsUsed: AgentRole[] = []
+    const errors: string[] = []
+    let currentStatus: IssueStatus = options.initialStatus ?? "new"
+    let currentAgent: AgentRole | null = null
+    let steps = 0
+    const maxSteps = 20 // Prevent infinite loops
+
+    let ctx: IssueContext = await this.buildIssueContext(options)
+
+    while (steps < maxSteps) {
+      steps++
+
+      const decision = decideRouting(ctx)
+      
+      if (!decision.nextAgent) {
+        break
+      }
+
+      currentAgent = decision.nextAgent
+      agentsUsed.push(currentAgent)
+
+      if (this.autoLog) {
+        await logPipelineStep(
+          this.client,
+          options.issueNumber,
+          `${formatAgentTag(currentAgent)}`,
+          "started",
+          decision.instructions
+        )
+      }
+
+      currentStatus = decision.status as IssueStatus
+      await this.client.setStatus(options.issueNumber, currentStatus)
+
+      ctx = await this.buildIssueContext(options)
+    }
+
+    return {
+      success: errors.length === 0,
+      finalAgent: currentAgent,
+      finalStatus: currentStatus,
+      agentsUsed,
+      totalSteps: steps,
+      errors,
+    }
+  }
+
+  private async buildIssueContext(options: PipelineRunOptions): Promise<IssueContext> {
+    const issue = await this.client.getIssue(options.issueNumber)
+    const comments = await this.client.getComments(options.issueNumber)
+    
+    return {
+      status: issue.labels.find(l => l.name.startsWith("status:"))?.name.replace("status: ", "") ?? "new",
+      labels: issue.labels.map(l => l.name),
+      checklists: this.parseChecklists(issue.body),
+      comments: comments.map(c => c.body),
+      files: options.files ?? [],
+      testResults: options.testResults,
+    }
+  }
+
+  private parseChecklists(body: string): { completed: number; total: number } {
+    const lines = body.split("\n")
+    const checkItems = lines.filter(l => l.match(/- \[[ x]\]/i))
+    const completed = checkItems.filter(l => l.match(/- \[x\]/i)).length
+    
+    return { completed, total: checkItems.length }
+  }
+
+  async logEvaluation(
+    issueNumber: number,
+    performances: AgentPerformance[],
+    iterations: number,
+    durationHours: number
+  ): Promise<void> {
+    await this.initialize()
+
+    const agents: Record<string, number> = {}
+    for (const perf of performances) {
+      agents[perf.agent] = perf.score
+    }
+
+    const result: EvaluationResult = {
+      issue: issueNumber,
+      date: new Date().toISOString(),
+      agents,
+      iterations,
+      duration_hours: durationHours,
+      summary: calculateOverallScore(performances).toString(),
+      recommendations: generateRecommendations({
+        issue: issueNumber,
+        date: new Date().toISOString(),
+        agents,
+        iterations,
+        duration_hours: durationHours,
+        summary: "",
+        recommendations: [],
+      }),
+    }
+
+    await saveEfficiencyScore({
+      issue: result.issue,
+      date: result.date,
+      agents: result.agents,
+      iterations: result.iterations,
+      duration_hours: result.duration_hours,
+    })
+
+    if (this.autoLog) {
+      const overallScore = calculateOverallScore(performances)
+      const scoreEmoji = overallScore >= 8 ? "🟢" : overallScore >= 5 ? "🟡" : "🔴"
+      
+      let comment = `## ${scoreEmoji} Pipeline Evaluation Report
+
+**Issue**: #${issueNumber}
+**Overall Score**: ${overallScore}/10
+**Duration**: ${durationHours.toFixed(1)}h
+**Iterations**: ${iterations}
+
+### Agent Scores
+
+| Agent | Score |
+|-------|-------|
+`
+      for (const perf of performances) {
+        const emoji = perf.score >= 8 ? "🟢" : perf.score >= 5 ? "🟡" : "🔴"
+        comment += `| ${emoji} ${perf.agent} | ${perf.score}/10 |\n`
+      }
+
+      if (result.recommendations.length > 0) {
+        comment += `\n### Recommendations\n\n`
+        for (const rec of result.recommendations) {
+          comment += `- ${rec}\n`
+        }
+      }
+
+      await this.client.createComment(issueNumber, { body: comment })
+
+      const lowScorers = performances.filter(p => p.score < this.efficiencyThreshold)
+      if (lowScorers.length > 0) {
+        const targets = lowScorers.map(p => `@${p.agent}`).join(", ")
+        await this.client.createComment(issueNumber, {
+          body: `⚠️ **Prompt Optimization Needed**\n\nThe following agents scored below ${this.efficiencyThreshold}/10: ${targets}\n\nConsider running prompt optimization after this issue is closed.`
+        })
+      }
+    }
+  }
+
+  async checkForDuplicates(issueNumber: number, keywords: string[]): Promise<{
+    hasDuplicates: boolean
+    relatedIssues: number[]
+  }> {
+    await this.initialize()
+
+    const recentComments = await this.client.getComments(issueNumber)
+    const minedIssues: number[] = []
+
+    for (const keyword of keywords) {
+      for (const comment of recentComments) {
+        const matches = comment.body.matchAll(/#(\d+)/g)
+        for (const match of matches) {
+          const num = parseInt(match[1], 10)
+          if (num !== issueNumber && !minedIssues.includes(num)) {
+            minedIssues.push(num)
+          }
+        }
+      }
+    }
+
+    return {
+      hasDuplicates: minedIssues.length > 0,
+      relatedIssues: minedIssues,
+    }
+  }
+}
+
+export async function createPipelineRunner(config?: PipelineConfig): Promise<PipelineRunner> {
+  const runner = new PipelineRunner(config)
+  await runner.initialize()
+  return runner
+}
+
+export { GiteaClient }
\ No newline at end of file
diff --git a/packages/opencode/src/kilocode/agent-manager/prompt-loader.ts b/src/kilocode/agent-manager/prompt-loader.ts
similarity index 94%
rename from packages/opencode/src/kilocode/agent-manager/prompt-loader.ts
rename to src/kilocode/agent-manager/prompt-loader.ts
index 38e0727..ad57ab6 100644
--- a/packages/opencode/src/kilocode/agent-manager/prompt-loader.ts
+++ b/src/kilocode/agent-manager/prompt-loader.ts
@@ -1,4 +1,5 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Prompt loader with efficiency logging
 
 import { readFile, writeFile, readdir, mkdir } from "fs/promises"
 import { join, dirname } from "path"
@@ -9,7 +10,7 @@ const AGENTS_DIR = ".kilo/agent"
 const LOGS_DIR = ".kilo/logs"
 const EFFICIENCY_FILE = "efficiency_score.json"
 
-interface EfficiencyScore {
+export interface EfficiencyScore {
   issue: number
   date: string
   agents: Record<AgentRole, number>
@@ -17,7 +18,7 @@ interface EfficiencyScore {
   duration_hours: number
 }
 
-interface EfficiencyLog {
+export interface EfficiencyLog {
   version: string
   history: EfficiencyScore[]
 }
@@ -64,7 +65,7 @@ export async function saveEfficiencyScore(score: EfficiencyScore): Promise<void>
   await writeFile(logPath, JSON.stringify(log, null, 2), "utf-8")
 }
 
-export async function hasLowScore(score: EfficiencyScore, threshold = 7): boolean {
+export async function hasLowScore(score: EfficiencyScore, threshold = 7): Promise<boolean> {
   const lowScores = Object.entries(score.agents)
     .filter(([_, s]) => s < threshold)
     .map(([agent, _]) => agent)
@@ -92,7 +93,6 @@ export async function initializeAgentDirectory(): Promise<void> {
   await ensureDir(agentsDir)
   await ensureDir(logsDir)
   
-  // Initialize efficiency log if it doesn't exist
   const logPath = join(logsDir, EFFICIENCY_FILE)
   if (!existsSync(logPath)) {
     const initial: EfficiencyLog = { version: "1.0", history: [] }
diff --git a/packages/opencode/src/kilocode/agent-manager/router.ts b/src/kilocode/agent-manager/router.ts
similarity index 98%
rename from packages/opencode/src/kilocode/agent-manager/router.ts
rename to src/kilocode/agent-manager/router.ts
index 37a6d83..b6ea119 100644
--- a/packages/opencode/src/kilocode/agent-manager/router.ts
+++ b/src/kilocode/agent-manager/router.ts
@@ -1,4 +1,5 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Router - decides next agent based on issue context
 
 import type { AgentRole } from "./index"
 import { getNextAgent, getStatusForAgent } from "./workflow"
diff --git a/packages/opencode/src/kilocode/agent-manager/types.ts b/src/kilocode/agent-manager/types.ts
similarity index 52%
rename from packages/opencode/src/kilocode/agent-manager/types.ts
rename to src/kilocode/agent-manager/types.ts
index c837128..b682dfa 100644
--- a/packages/opencode/src/kilocode/agent-manager/types.ts
+++ b/src/kilocode/agent-manager/types.ts
@@ -1,8 +1,11 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Typings re-export
 
 export type { AgentRole, AgentConfig, WorkflowTransition, WorkflowState } from "./index"
-export type { IssueStatus } from "./workflow"
+export type { IssueStatus, WorkflowNode } from "./workflow"
 export type { RoutingDecision, IssueContext } from "./router"
 export type { EfficiencyScore, EfficiencyLog } from "./prompt-loader"
+export type { AgentPerformance, EvaluationResult } from "./evaluator"
 export type { CommitInfo, IssueReference } from "./git-ops"
-export type { AgentPerformance, EvaluationResult } from "./evaluator"
\ No newline at end of file
+export type { GiteaConfig, Issue, IssueComment, CreateIssueOptions } from "./gitea-client"
+export type { PipelineConfig, PipelineRunOptions, PipelineResult } from "./pipeline-runner"
\ No newline at end of file
diff --git a/packages/opencode/src/kilocode/agent-manager/workflow.ts b/src/kilocode/agent-manager/workflow.ts
similarity index 97%
rename from packages/opencode/src/kilocode/agent-manager/workflow.ts
rename to src/kilocode/agent-manager/workflow.ts
index 30d0fd4..924c02e 100644
--- a/packages/opencode/src/kilocode/agent-manager/workflow.ts
+++ b/src/kilocode/agent-manager/workflow.ts
@@ -1,4 +1,5 @@
-// kilocode_change - new file
+// kilocode_change - integrated module
+// Workflow graph and state transitions
 
 import type { AgentRole } from "./index"
 
diff --git a/src/kilocode/index.ts b/src/kilocode/index.ts
new file mode 100644
index 0000000..846ea70
--- /dev/null
+++ b/src/kilocode/index.ts
@@ -0,0 +1,111 @@
+// kilocode_change - integrated module
+// Main entry point for agent-manager
+
+// Types
+export type { 
+  AgentRole, 
+  AgentConfig, 
+  WorkflowTransition, 
+  WorkflowState 
+} from "./agent-manager/index"
+export type { 
+  EfficiencyScore, 
+  EfficiencyLog 
+} from "./agent-manager/prompt-loader"
+export type { 
+  IssueStatus, 
+  WorkflowNode 
+} from "./agent-manager/workflow"
+export type { 
+  RoutingDecision, 
+  IssueContext 
+} from "./agent-manager/router"
+export type { 
+  AgentPerformance, 
+  EvaluationResult 
+} from "./agent-manager/evaluator"
+export type { 
+  CommitInfo, 
+  IssueReference 
+} from "./agent-manager/git-ops"
+export type { 
+  GiteaConfig, 
+  Issue, 
+  IssueComment, 
+  CreateIssueOptions 
+} from "./agent-manager/gitea-client"
+export type { 
+  PipelineConfig, 
+  PipelineRunOptions, 
+  PipelineResult 
+} from "./agent-manager/pipeline-runner"
+
+// Agent Manager functions
+export { 
+  loadAgentConfig, 
+  loadAllAgents, 
+  loadRules, 
+  loadFullSystemPrompt 
+} from "./agent-manager/index"
+
+// Prompt Loader functions
+export {
+  loadPrompt,
+  savePrompt,
+  loadEfficiencyLog,
+  saveEfficiencyScore,
+  hasLowScore,
+  findPromptOptimizationTargets,
+  initializeAgentDirectory,
+  listAvailableAgents,
+} from "./agent-manager/prompt-loader"
+
+// Workflow constants and functions
+export {
+  WORKFLOW_GRAPH,
+  STATUS_LABELS,
+  AGENT_BY_STATUS,
+  NEXT_AGENT_AFTER,
+  getNextAgent,
+  getStatusForAgent,
+} from "./agent-manager/workflow"
+
+// Router functions
+export {
+  decideRouting,
+  formatAgentTag,
+  parseAgentTag,
+} from "./agent-manager/router"
+
+// Evaluator functions
+export {
+  calculateOverallScore,
+  detectPatterns,
+  generateRecommendations,
+  saveEvaluation,
+  formatEvaluationReport,
+} from "./agent-manager/evaluator"
+
+// Git operations
+export {
+  gitLog,
+  searchCommits,
+  getFileHistory,
+  blameFile,
+  findRelatedIssues,
+  hasCommitWithMessage,
+} from "./agent-manager/git-ops"
+
+// Gitea Client
+export {
+  GiteaClient,
+  logAgentPerformance,
+  logPipelineStep,
+  detectRepository,
+} from "./agent-manager/gitea-client"
+
+// Pipeline Runner
+export {
+  PipelineRunner,
+  createPipelineRunner,
+} from "./agent-manager/pipeline-runner"
\ No newline at end of file
diff --git a/src/kilocode/scripts/run-pipeline.ts b/src/kilocode/scripts/run-pipeline.ts
new file mode 100644
index 0000000..d21edf1
--- /dev/null
+++ b/src/kilocode/scripts/run-pipeline.ts
@@ -0,0 +1,58 @@
+#!/usr/bin/env bun
+// Pipeline runner script
+// Usage: bun run src/kilocode/scripts/run-pipeline.ts --issue 42
+
+import { 
+  createPipelineRunner, 
+  loadAllAgents,
+  type AgentRole 
+} from '../index.js'
+
+const args = process.argv.slice(2)
+const issueArg = args.find(a => a.startsWith('--issue='))
+const issueNumber = issueArg ? parseInt(issueArg.split('=')[1], 10) : null
+
+if (!issueNumber) {
+  console.error('Usage: bun run run-pipeline.ts --issue=<number>')
+  process.exit(1)
+}
+
+async function main() {
+  console.log(`🚀 Starting pipeline for issue #${issueNumber}`)
+  
+  try {
+    // Load available agents
+    const agents = await loadAllAgents()
+    console.log(`📋 Loaded ${agents.size} agent configurations`)
+    
+    // Create pipeline runner
+    const runner = await createPipelineRunner({
+      efficiencyThreshold: 7,
+      autoLog: true
+    })
+    
+    // Run pipeline
+    const result = await runner.run({
+      issueNumber,
+      files: []
+    })
+    
+    console.log('\n📊 Pipeline Result:')
+    console.log(`  Success: ${result.success}`)
+    console.log(`  Final Status: ${result.finalStatus}`)
+    console.log(`  Agents Used: ${result.agentsUsed.join(' → ')}`)
+    console.log(`  Total Steps: ${result.totalSteps}`)
+    
+    if (result.errors.length > 0) {
+      console.log('\n❌ Errors:')
+      result.errors.forEach(e => console.log(`  - ${e}`))
+    }
+    
+    process.exit(result.success ? 0 : 1)
+  } catch (error) {
+    console.error('Pipeline error:', error)
+    process.exit(1)
+  }
+}
+
+main()
\ No newline at end of file
diff --git a/tsconfig.json b/tsconfig.json
new file mode 100644
index 0000000..8dd2122
--- /dev/null
+++ b/tsconfig.json
@@ -0,0 +1,25 @@
+{
+  "compilerOptions": {
+    "target": "ES2022",
+    "module": "ESNext",
+    "moduleResolution": "bundler",
+    "esModuleInterop": true,
+    "strict": true,
+    "skipLibCheck": true,
+    "declaration": true,
+    "declarationMap": true,
+    "sourceMap": true,
+    "outDir": "./dist",
+    "rootDir": "./src",
+    "resolveJsonModule": true,
+    "isolatedModules": true,
+    "noUnusedLocals": true,
+    "noUnusedParameters": true,
+    "noImplicitReturns": true,
+    "noFallthroughCasesInSwitch": true,
+    "allowImportingTsExtensions": false,
+    "rewriteRelativeImportExtensions": true
+  },
+  "include": ["src/**/*"],
+  "exclude": ["node_modules", "dist"]
+}
\ No newline at end of file