Merge pull request #6645 from jk-f5/feat/pgvector

feat: Intial support for pgvector as backing vector database
This commit is contained in:
Timothy Jaeryang Baek 2024-11-05 15:14:55 -08:00 committed by GitHub
commit 1ee7730fac
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5 changed files with 365 additions and 1 deletions

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@ -17,3 +17,4 @@ uploads
.ipynb_checkpoints
**/*.db
_test
backend/data/*

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@ -12,6 +12,10 @@ elif VECTOR_DB == "opensearch":
from open_webui.apps.retrieval.vector.dbs.opensearch import OpenSearchClient
VECTOR_DB_CLIENT = OpenSearchClient()
elif VECTOR_DB == "pgvector":
from open_webui.apps.retrieval.vector.dbs.pgvector import PgvectorClient
VECTOR_DB_CLIENT = PgvectorClient()
else:
from open_webui.apps.retrieval.vector.dbs.chroma import ChromaClient

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@ -0,0 +1,352 @@
from typing import Optional, List, Dict, Any
from sqlalchemy import (
cast,
column,
create_engine,
Column,
Integer,
select,
text,
Text,
values,
)
from sqlalchemy.sql import true
from sqlalchemy.pool import NullPool
from sqlalchemy.orm import declarative_base, scoped_session, sessionmaker
from sqlalchemy.dialects.postgresql import JSONB, array
from pgvector.sqlalchemy import Vector
from sqlalchemy.ext.mutable import MutableDict
from open_webui.apps.retrieval.vector.main import VectorItem, SearchResult, GetResult
from open_webui.config import PGVECTOR_DB_URL
VECTOR_LENGTH = 1536
Base = declarative_base()
class DocumentChunk(Base):
__tablename__ = "document_chunk"
id = Column(Text, primary_key=True)
vector = Column(Vector(dim=VECTOR_LENGTH), nullable=True)
collection_name = Column(Text, nullable=False)
text = Column(Text, nullable=True)
vmetadata = Column(MutableDict.as_mutable(JSONB), nullable=True)
class PgvectorClient:
def __init__(self) -> None:
# if no pgvector uri, use the existing database connection
if not PGVECTOR_DB_URL:
from open_webui.apps.webui.internal.db import Session
self.session = Session
else:
engine = create_engine(PGVECTOR_DB_URL, pool_pre_ping=True, poolclass=NullPool)
SessionLocal = sessionmaker(
autocommit=False, autoflush=False, bind=engine, expire_on_commit=False
)
self.session = scoped_session(SessionLocal)
try:
# Ensure the pgvector extension is available
self.session.execute(text("CREATE EXTENSION IF NOT EXISTS vector;"))
# Create the tables if they do not exist
# Base.metadata.create_all requires a bind (engine or connection)
# Get the connection from the session
connection = self.session.connection()
Base.metadata.create_all(bind=connection)
# Create an index on the vector column if it doesn't exist
self.session.execute(
text(
"CREATE INDEX IF NOT EXISTS idx_document_chunk_vector "
"ON document_chunk USING ivfflat (vector vector_cosine_ops) WITH (lists = 100);"
)
)
self.session.execute(
text(
"CREATE INDEX IF NOT EXISTS idx_document_chunk_collection_name "
"ON document_chunk (collection_name);"
)
)
self.session.commit()
print("Initialization complete.")
except Exception as e:
self.session.rollback()
print(f"Error during initialization: {e}")
raise
def adjust_vector_length(self, vector: List[float]) -> List[float]:
# Adjust vector to have length VECTOR_LENGTH
current_length = len(vector)
if current_length < VECTOR_LENGTH:
# Pad the vector with zeros
vector += [0.0] * (VECTOR_LENGTH - current_length)
elif current_length > VECTOR_LENGTH:
raise Exception(
f"Vector length {current_length} not supported. Max length must be <= {VECTOR_LENGTH}"
)
return vector
def insert(self, collection_name: str, items: List[VectorItem]) -> None:
try:
new_items = []
for item in items:
vector = self.adjust_vector_length(item["vector"])
new_chunk = DocumentChunk(
id=item["id"],
vector=vector,
collection_name=collection_name,
text=item["text"],
vmetadata=item["metadata"],
)
new_items.append(new_chunk)
self.session.bulk_save_objects(new_items)
self.session.commit()
print(
f"Inserted {len(new_items)} items into collection '{collection_name}'."
)
except Exception as e:
self.session.rollback()
print(f"Error during insert: {e}")
raise
def upsert(self, collection_name: str, items: List[VectorItem]) -> None:
try:
for item in items:
vector = self.adjust_vector_length(item["vector"])
existing = (
self.session.query(DocumentChunk)
.filter(DocumentChunk.id == item["id"])
.first()
)
if existing:
existing.vector = vector
existing.text = item["text"]
existing.vmetadata = item["metadata"]
existing.collection_name = (
collection_name # Update collection_name if necessary
)
else:
new_chunk = DocumentChunk(
id=item["id"],
vector=vector,
collection_name=collection_name,
text=item["text"],
vmetadata=item["metadata"],
)
self.session.add(new_chunk)
self.session.commit()
print(f"Upserted {len(items)} items into collection '{collection_name}'.")
except Exception as e:
self.session.rollback()
print(f"Error during upsert: {e}")
raise
def search(
self,
collection_name: str,
vectors: List[List[float]],
limit: Optional[int] = None,
) -> Optional[SearchResult]:
try:
if not vectors:
return None
# Adjust query vectors to VECTOR_LENGTH
vectors = [self.adjust_vector_length(vector) for vector in vectors]
num_queries = len(vectors)
def vector_expr(vector):
return cast(array(vector), Vector(VECTOR_LENGTH))
# Create the values for query vectors
qid_col = column("qid", Integer)
q_vector_col = column("q_vector", Vector(VECTOR_LENGTH))
query_vectors = (
values(qid_col, q_vector_col)
.data(
[(idx, vector_expr(vector)) for idx, vector in enumerate(vectors)]
)
.alias("query_vectors")
)
# Build the lateral subquery for each query vector
subq = (
select(
DocumentChunk.id,
DocumentChunk.text,
DocumentChunk.vmetadata,
(
DocumentChunk.vector.cosine_distance(query_vectors.c.q_vector)
).label("distance"),
)
.where(DocumentChunk.collection_name == collection_name)
.order_by(
(DocumentChunk.vector.cosine_distance(query_vectors.c.q_vector))
)
)
if limit is not None:
subq = subq.limit(limit)
subq = subq.lateral("result")
# Build the main query by joining query_vectors and the lateral subquery
stmt = (
select(
query_vectors.c.qid,
subq.c.id,
subq.c.text,
subq.c.vmetadata,
subq.c.distance,
)
.select_from(query_vectors)
.join(subq, true())
.order_by(query_vectors.c.qid, subq.c.distance)
)
result_proxy = self.session.execute(stmt)
results = result_proxy.all()
ids = [[] for _ in range(num_queries)]
distances = [[] for _ in range(num_queries)]
documents = [[] for _ in range(num_queries)]
metadatas = [[] for _ in range(num_queries)]
if not results:
return SearchResult(
ids=ids,
distances=distances,
documents=documents,
metadatas=metadatas,
)
for row in results:
qid = int(row.qid)
ids[qid].append(row.id)
distances[qid].append(row.distance)
documents[qid].append(row.text)
metadatas[qid].append(row.vmetadata)
return SearchResult(
ids=ids, distances=distances, documents=documents, metadatas=metadatas
)
except Exception as e:
print(f"Error during search: {e}")
return None
def query(
self, collection_name: str, filter: Dict[str, Any], limit: Optional[int] = None
) -> Optional[GetResult]:
try:
query = self.session.query(DocumentChunk).filter(
DocumentChunk.collection_name == collection_name
)
for key, value in filter.items():
query = query.filter(DocumentChunk.vmetadata[key].astext == str(value))
if limit is not None:
query = query.limit(limit)
results = query.all()
if not results:
return None
ids = [[result.id for result in results]]
documents = [[result.text for result in results]]
metadatas = [[result.vmetadata for result in results]]
return GetResult(
ids=ids,
documents=documents,
metadatas=metadatas,
)
except Exception as e:
print(f"Error during query: {e}")
return None
def get(
self, collection_name: str, limit: Optional[int] = None
) -> Optional[GetResult]:
try:
query = self.session.query(DocumentChunk).filter(
DocumentChunk.collection_name == collection_name
)
if limit is not None:
query = query.limit(limit)
results = query.all()
if not results:
return None
ids = [[result.id for result in results]]
documents = [[result.text for result in results]]
metadatas = [[result.vmetadata for result in results]]
return GetResult(ids=ids, documents=documents, metadatas=metadatas)
except Exception as e:
print(f"Error during get: {e}")
return None
def delete(
self,
collection_name: str,
ids: Optional[List[str]] = None,
filter: Optional[Dict[str, Any]] = None,
) -> None:
try:
query = self.session.query(DocumentChunk).filter(
DocumentChunk.collection_name == collection_name
)
if ids:
query = query.filter(DocumentChunk.id.in_(ids))
if filter:
for key, value in filter.items():
query = query.filter(
DocumentChunk.vmetadata[key].astext == str(value)
)
deleted = query.delete(synchronize_session=False)
self.session.commit()
print(f"Deleted {deleted} items from collection '{collection_name}'.")
except Exception as e:
self.session.rollback()
print(f"Error during delete: {e}")
raise
def reset(self) -> None:
try:
deleted = self.session.query(DocumentChunk).delete()
self.session.commit()
print(
f"Reset complete. Deleted {deleted} items from 'document_chunk' table."
)
except Exception as e:
self.session.rollback()
print(f"Error during reset: {e}")
raise
def close(self) -> None:
pass
def has_collection(self, collection_name: str) -> bool:
try:
exists = (
self.session.query(DocumentChunk)
.filter(DocumentChunk.collection_name == collection_name)
.first()
is not None
)
return exists
except Exception as e:
print(f"Error checking collection existence: {e}")
return False
def delete_collection(self, collection_name: str) -> None:
self.delete(collection_name)
print(f"Collection '{collection_name}' deleted.")

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@ -20,6 +20,7 @@ from open_webui.env import (
WEBUI_FAVICON_URL,
WEBUI_NAME,
log,
DATABASE_URL,
)
from pydantic import BaseModel
from sqlalchemy import JSON, Column, DateTime, Integer, func
@ -964,6 +965,11 @@ OPENSEARCH_CERT_VERIFY = os.environ.get("OPENSEARCH_CERT_VERIFY", False)
OPENSEARCH_USERNAME = os.environ.get("OPENSEARCH_USERNAME", None)
OPENSEARCH_PASSWORD = os.environ.get("OPENSEARCH_PASSWORD", None)
# Pgvector
PGVECTOR_DB_URL = os.environ.get("PGVECTOR_DB_URL", None)
if VECTOR_DB == 'pgvector' and not (DATABASE_URL.startswith("postgres") or PGVECTOR_DB_URL):
raise ValueError("Pgvector requires setting PGVECTOR_DB_URL or using Postgres with vector extension as the primary database.")
####################################
# Information Retrieval (RAG)
####################################

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@ -19,6 +19,7 @@ alembic==1.13.2
peewee==3.17.6
peewee-migrate==1.12.2
psycopg2-binary==2.9.9
pgvector==0.3.5
PyMySQL==1.1.1
bcrypt==4.2.0