diff --git a/api/src/app.module.ts b/api/src/app.module.ts
index 86c35c44..67e296d7 100644
--- a/api/src/app.module.ts
+++ b/api/src/app.module.ts
@@ -11,7 +11,7 @@ import path from 'path';
 import { CacheModule } from '@nestjs/cache-manager';
 // eslint-disable-next-line import/order
 import { MailerModule } from '@nestjs-modules/mailer';
-import { Module } from '@nestjs/common';
+import { Module, OnApplicationBootstrap } from '@nestjs/common';
 import { APP_GUARD } from '@nestjs/core';
 import { EventEmitterModule } from '@nestjs/event-emitter';
 import { MongooseModule } from '@nestjs/mongoose';
@@ -33,12 +33,15 @@ import { AppService } from './app.service';
 import { AttachmentModule } from './attachment/attachment.module';
 import { ChannelModule } from './channel/channel.module';
 import { ChatModule } from './chat/chat.module';
+import { CleanupModule } from './cleanup/cleanup.module';
+import { CleanupService } from './cleanup/cleanup.service';
 import { CmsModule } from './cms/cms.module';
 import { config } from './config';
 import extraModules from './extra';
 import { HelperModule } from './helper/helper.module';
 import { I18nModule } from './i18n/i18n.module';
 import { LoggerModule } from './logger/logger.module';
+import { LoggerService } from './logger/logger.service';
 import { MigrationModule } from './migration/migration.module';
 import { NlpModule } from './nlp/nlp.module';
 import { PluginsModule } from './plugins/plugins.module';
@@ -152,6 +155,7 @@ const i18nOptions: I18nOptions = {
           max: config.cache.max,
         }),
     MigrationModule,
+    CleanupModule,
     ...extraModules,
   ],
   controllers: [AppController],
@@ -161,4 +165,17 @@ const i18nOptions: I18nOptions = {
     AppService,
   ],
 })
-export class HexabotModule {}
+export class HexabotModule implements OnApplicationBootstrap {
+  constructor(
+    private readonly loggerService: LoggerService,
+    private readonly cleanupService: CleanupService,
+  ) {}
+
+  async onApplicationBootstrap() {
+    try {
+      await this.cleanupService.deleteUnusedSettings();
+    } catch (error) {
+      this.loggerService.error('Unable to delete unused settings', error);
+    }
+  }
+}
diff --git a/api/src/cleanup/cleanup.module.ts b/api/src/cleanup/cleanup.module.ts
new file mode 100644
index 00000000..e758fc26
--- /dev/null
+++ b/api/src/cleanup/cleanup.module.ts
@@ -0,0 +1,18 @@
+/*
+ * Copyright © 2025 Hexastack. All rights reserved.
+ *
+ * Licensed under the GNU Affero General Public License v3.0 (AGPLv3) with the following additional terms:
+ * 1. The name "Hexabot" is a trademark of Hexastack. You may not use this name in derivative works without express written permission.
+ * 2. All derivative works must include clear attribution to the original creator and software, Hexastack and Hexabot, in a prominent location (e.g., in the software's "About" section, documentation, and README file).
+ */
+
+import { Global, Module } from '@nestjs/common';
+
+import { CleanupService } from './cleanup.service';
+
+@Global()
+@Module({
+  providers: [CleanupService],
+  exports: [CleanupService],
+})
+export class CleanupModule {}
diff --git a/api/src/cleanup/cleanup.service.ts b/api/src/cleanup/cleanup.service.ts
new file mode 100644
index 00000000..c3a241a2
--- /dev/null
+++ b/api/src/cleanup/cleanup.service.ts
@@ -0,0 +1,62 @@
+/*
+ * Copyright © 2025 Hexastack. All rights reserved.
+ *
+ * Licensed under the GNU Affero General Public License v3.0 (AGPLv3) with the following additional terms:
+ * 1. The name "Hexabot" is a trademark of Hexastack. You may not use this name in derivative works without express written permission.
+ * 2. All derivative works must include clear attribution to the original creator and software, Hexastack and Hexabot, in a prominent location (e.g., in the software's "About" section, documentation, and README file).
+ */
+
+import { Injectable } from '@nestjs/common';
+
+import { ChannelService } from '@/channel/channel.service';
+import { HelperService } from '@/helper/helper.service';
+import { LoggerService } from '@/logger/logger.service';
+import { SettingService } from '@/setting/services/setting.service';
+import { DeleteResult } from '@/utils/generics/base-repository';
+
+import { TCriteria, TExtractExtension, TExtractNamespace } from './types';
+
+@Injectable()
+export class CleanupService {
+  constructor(
+    private readonly helperService: HelperService,
+    private readonly loggerService: LoggerService,
+    private readonly settingService: SettingService,
+    private readonly channelService: ChannelService,
+  ) {}
+
+  private async deleteMany(criteria: TCriteria[]): Promise<DeleteResult> {
+    return await this.settingService.deleteMany({
+      $or: criteria.map(({ suffix, namespaces }) => ({
+        group: { $regex: suffix, $nin: namespaces },
+      })),
+    });
+  }
+
+  public getChannelNamespaces(): TExtractNamespace<'channel'>[] {
+    return this.channelService
+      .getAll()
+      .map((channel) => channel.getNamespace<TExtractExtension<'channel'>>());
+  }
+
+  public getHelperNamespaces(): TExtractNamespace<'helper'>[] {
+    return this.helperService
+      .getAll()
+      .map((helper) => helper.getNamespace<TExtractExtension<'helper'>>());
+  }
+
+  public async deleteUnusedSettings() {
+    const channels = this.getChannelNamespaces();
+    const helpers = this.getHelperNamespaces();
+    const { deletedCount } = await this.deleteMany([
+      { suffix: '_channel', namespaces: channels },
+      { suffix: '_helper', namespaces: helpers },
+    ]);
+
+    if (deletedCount > 0) {
+      this.loggerService.log(
+        `${deletedCount} unused setting${deletedCount === 1 ? '' : 's'} are successfully deleted!`,
+      );
+    }
+  }
+}
diff --git a/api/src/cleanup/types.ts b/api/src/cleanup/types.ts
new file mode 100644
index 00000000..2514c1c8
--- /dev/null
+++ b/api/src/cleanup/types.ts
@@ -0,0 +1,41 @@
+/*
+ * Copyright © 2025 Hexastack. All rights reserved.
+ *
+ * Licensed under the GNU Affero General Public License v3.0 (AGPLv3) with the following additional terms:
+ * 1. The name "Hexabot" is a trademark of Hexastack. You may not use this name in derivative works without express written permission.
+ * 2. All derivative works must include clear attribution to the original creator and software, Hexastack and Hexabot, in a prominent location (e.g., in the software's "About" section, documentation, and README file).
+ */
+
+import { ExtensionName } from '@/utils/types/extension';
+
+type TExcludedExtension = 'plugin';
+
+type TExcludeSuffix<
+  T,
+  S extends string = '_',
+  Suffix extends string = `${S}${TExcludedExtension}`,
+> = T extends `${infer _Base}${Suffix}` ? never : T;
+
+export type TExtensionName = TExcludeSuffix<ExtensionName, '-'>;
+
+export type TExtension =
+  Extract<TExtensionName, `${string}-${string}`> extends `${string}-${infer S}`
+    ? `${S}`
+    : never;
+
+export type TNamespace = HyphenToUnderscore<TExtensionName>;
+
+export type TExtractNamespace<
+  T extends TExtension = TExtension,
+  M extends TExtensionName = TExtensionName,
+> = M extends `${string}${T}` ? HyphenToUnderscore<M> : never;
+
+export type TExtractExtension<
+  T extends TExtension = TExtension,
+  M extends TExtensionName = TExtensionName,
+> = M extends `${string}${T}` ? M : never;
+
+export type TCriteria = {
+  suffix: `_${TExtension}`;
+  namespaces: TNamespace[];
+};
diff --git a/api/src/utils/test/fixtures/setting.ts b/api/src/utils/test/fixtures/setting.ts
index 39ccfadb..7e848aee 100644
--- a/api/src/utils/test/fixtures/setting.ts
+++ b/api/src/utils/test/fixtures/setting.ts
@@ -11,6 +11,7 @@ import mongoose from 'mongoose';
 import { SettingCreateDto } from '@/setting/dto/setting.dto';
 import { SettingModel } from '@/setting/schemas/setting.schema';
 import { SettingType } from '@/setting/schemas/types';
+import { getRandom } from '@/utils/helpers/safeRandom';
 
 export const settingFixtures: SettingCreateDto[] = [
   {
@@ -90,6 +91,41 @@ export const settingFixtures: SettingCreateDto[] = [
     type: SettingType.text,
     weight: 10,
   },
+  {
+    group: `${getRandom()}_channel`,
+    label: `${getRandom()}`,
+    value: '',
+    type: SettingType.text,
+    weight: 11,
+  },
+  {
+    group: `${getRandom()}_helper`,
+    label: `${getRandom()}`,
+    value: '',
+    type: SettingType.text,
+    weight: 12,
+  },
+  {
+    group: `${getRandom()}_channel`,
+    label: `${getRandom()}`,
+    value: '',
+    type: SettingType.text,
+    weight: 13,
+  },
+  {
+    group: `${getRandom()}_helper`,
+    label: `${getRandom()}`,
+    value: '',
+    type: SettingType.text,
+    weight: 14,
+  },
+  {
+    group: 'local_storage_helper',
+    label: 'default storage helper label',
+    value: 'local-storage-helper',
+    type: SettingType.text,
+    weight: 15,
+  },
 ];
 
 export const installSettingFixtures = async () => {