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`Config.roots` defaulted to `[]`, so a deployment that did not patch both roots in got a roster with none — `dsh run` once booted exactly that and failed resolving `standard`. The user root never needed an app: `<dshHome>/.agent-presets` is the same place in every deployment, resolvable here the way `dsh-skill-local` resolves `<dshHome>/skills`. The roster now derives that root itself unless `includeUserRoot` is false, and `apps/cli` supplies only the SHIPPED root, whose path an installed app alone can resolve. The derived root is appended after every configured root, so a shipped id still shadows a home directory claiming it and `writableRoot()` still prefers an explicitly configured `user` root; the set is resolved once at construction, because a root set that changed between a `list()` and the `copy()` acting on its answer would author into a directory the caller never saw. Every test that pins an exact roster now says `includeUserRoot: false` — the machine's real harness home must not decide what a golden or an assertion counts.