Commit Graph

30 Commits

Author SHA1 Message Date
Hypatia May
224e00b2bd fix: quiesce cancelled session reconciliation 2026-07-24 21:27:07 +08:00
Hypatia May
fec4ce52cc fix: batch cancellable title reads 2026-07-24 18:13:11 +08:00
Hypatia May
9482affc48 fix(session-query): make persisted observation non-mutating 2026-07-23 21:33:28 +08:00
Hypatia May
c1fa985c20 Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	docs/architecture.i18n.yaml
#	packages/client/ui-sidebar/tests/sidebar-root.spec.tsx
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence/README.md
2026-07-23 21:13:29 +08:00
Hypatia May
0a0f19cf57 Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	.agents/notes/implemented/feature/2026-07-10-session-query-service.md
#	.agents/notes/implemented/feature/2026-07-10-sqlite-session-query-provider.md
#	.agents/notes/proposed/feature/2026-07-10-sqlite-session-query-provider.md
#	docs/architecture.md
#	docs/capability-seams.md
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/core.md
#	docs/core-data-structures/persistence.md
#	docs/core-data-structures/session-query.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	packages/README.md
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/hooks/hooks-claude/tests/coverage.spec.ts
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
#	packages/session-persistence/session-persistence-sqlite/README.md
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/schema.ts
#	packages/session-persistence/session-persistence-sqlite/tests/sqlite.spec.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/package.json
#	packages/session-query/README.md
#	packages/session-query/session-query/README.md
#	packages/session-query/session-query/package.json
#	packages/session-query/session-query/src/config.ts
#	packages/session-query/session-query/src/index.ts
#	packages/session-query/session-query/src/types.ts
#	pnpm-lock.yaml
#	scripts/gen-doc-graphs.ts
#	scripts/type-equiv.manifest.json
#	tsconfig.host.json
#	tsconfig.json
2026-07-23 13:56:56 +08:00
Tianyi Cui
ec1e1394ed Merge commit 'refs/codex/unblock/master-current' into HEAD
# Conflicts:
#	docs/config-catalog.md
#	packages/session-persistence/session-persistence-jsonl/README.md
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
2026-07-21 20:28:30 +08:00
Tianyi Cui
73e3f658c6 fix(persistence): bind JSONL identity before mutation
JSONL discovered a log by the requested session id but later routed repair and append from the parsed header. A log selected for session A could therefore declare session B and redirect mutation to B.

Validate the requested id and exact header-derived cwd-bucket path before returning a stored prefix, reject duplicate ids across buckets, and repeat the id/cwd guards in the coordinator before repair or state publication. Collapse the redundant loadLive hook into loadStored while retaining the existing bucket layout and one-live-writer topology, avoiding flat-layout churn and a locator generic that SQLite and test backends do not need.
2026-07-20 17:42:44 +08:00
Yichen Jiang
0d00106fa8 fix(session): persist the delegation depth in the session header
A subagent child's recursion depth lived only in runtime AgentOptions,
so a persisted child came back from resume counted as top-level and
maxDepth stopped binding after every restart. Add
SessionHeader.delegationDepth, round-trip it through the JSONL and
SQLite backends (SQLite schema v5), restore it on agent-loop resume,
and write it when the in-process backends create a child. The seam now
owns the shared depth vocabulary (delegationDepthOf): the persisted
header is authoritative and monotone — runtime options may deepen it
but never lower it.
2026-07-19 17:20:36 +08:00
Tianyi Cui
176973cb7b docs(session-persistence): clarify SQLite permission limits 2026-07-19 11:51:22 +08:00
Tianyi Cui
85fc58943e docs(session-persistence): tighten SQLite permission prose 2026-07-19 11:37:41 +08:00
Yichen Jiang
eb86fce086 Merge remote-tracking branch 'origin/master' into worktree/fix-sqlite-file-permissions
# Conflicts:
#	docs/config-catalog.md
2026-07-17 23:06:20 +08:00
Yichen Jiang
ac893f97bb fix(session-persistence): address permission review 2026-07-17 10:47:32 +08:00
Yichen Jiang
96975f3840 fix(session-persistence): create SQLite databases owner-only 2026-07-17 10:15:19 +08:00
Hypatia May
75e9958f11 fix(session-query): close review edge cases (round 4) 2026-07-17 09:39:39 +08:00
Hypatia May
aa82ba4abc Merge remote-tracking branch 'origin/master' into session-query-search
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/module-graph.md
#	packages/session-persistence/session-persistence-jsonl/README.md
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/README.md
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/schema.ts
#	packages/session-persistence/session-persistence-sqlite/tests/sqlite.spec.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/src/coordinator.ts
#	packages/session-persistence/session-persistence/tests/persistence.spec.ts
#	packages/session-query/session-query/README.md
2026-07-15 16:17:59 +08:00
Hypatia May
35edf2a825 fix(session-query): qualify persistence revisions by store 2026-07-15 12:32:18 +08:00
Hypatia May
f88ca85ffd fix(session-query): harden SQLite search reconciliation 2026-07-15 12:10:24 +08:00
Yichen Jiang
904397a7ef Merge remote-tracking branch 'origin/master' into codex/agent-session-jsonl-location
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.1.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.2.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.jsonl
#	examples/acp-agent/tests/snapshots/both-mode-turn/session.jsonl
#	examples/acp-agent/tests/snapshots/permission-switching/session.jsonl
#	examples/acp-agent/tests/snapshots/skill-load/session.jsonl
#	examples/acp-agent/tests/snapshots/text-turn/session.jsonl
#	packages/session-persistence/session-persistence/src/index.ts
2026-07-15 11:12:39 +08:00
Yichen Jiang
0d67c16d56 Merge remote-tracking branch 'origin/master' into codex/agent-session-jsonl-location
# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/bash.md
#	docs/module-graph.md
#	docs/rfc/INDEX.md
#	docs/rfc/implemented/architecture/2026-06-30-bash-stdin-env-trusted-plugin-surface.md
#	docs/rfc/implemented/feature/2026-06-30-hook-bridges.md
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.1.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.2.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/session.jsonl
#	examples/acp-agent/tests/snapshots/advanced-toolchain/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/both-mode-turn/session.jsonl
#	examples/acp-agent/tests/snapshots/both-mode-turn/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/code-mode-turn/system-prompt.golden.md
#	examples/acp-agent/tests/snapshots/skill-load/session.jsonl
#	examples/acp-agent/tests/snapshots/text-turn/session.jsonl
#	examples/sandbox-acp-agent/tests/snapshots/mode-switching/session.jsonl
#	packages/bash/bash-local/README.md
#	packages/bash/bash-local/src/run.ts
#	packages/bash/bash-local/tests/run.spec.ts
#	packages/bash/bash/README.md
#	packages/bash/tool-bash/README.md
#	packages/bash/tool-bash/src/index.ts
#	packages/bash/tool-bash/tests/tools.spec.ts
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/agent-core/src/index.ts
#	packages/session-persistence/session-persistence-jsonl/src/index.ts
#	packages/session-persistence/session-persistence-sqlite/src/index.ts
#	packages/session-persistence/session-persistence/README.md
#	packages/session-persistence/session-persistence/src/index.ts
#	packages/ui/acp-agent/README.md
#	packages/ui/stdio-agent/README.md
2026-07-14 18:04:05 +08:00
Tianyi Cui
34a059c9bc Merge remote-tracking branch 'origin/master' into codex/simp-session-dead-surface
# Conflicts:
#	docs/cordis-catalog/services.md
#	packages/core/session/README.md
#	packages/core/session/tests/derived-cache.spec.ts
#	packages/session-persistence/session-persistence-jsonl/tests/jsonl.spec.ts
#	packages/session-persistence/session-persistence/src/coordinator.ts
#	packages/session-persistence/session-persistence/src/index.ts
2026-07-14 17:24:02 +08:00
Tianyi Cui
148046b9c8 docs: rebalance prose cleanup and add trimming skill 2026-07-13 23:27:00 +08:00
Tianyi Cui
d060c0dd4f refactor: prune dead session surfaces 2026-07-13 23:25:20 +08:00
Tianyi Cui
75838e10b5 docs: trim generated prose 2026-07-12 03:36:43 +08:00
Yichen Jiang
eea0a99985 feat: expose agent session log location 2026-07-10 20:52:27 +08:00
Tianyi Cui
774d460889 Expose audited hardcoded tunables as plugin config
The audit swept every packages/*/* plugin for the new AGENTS.md
convention (no hardcoded tunables in plugins) and exposes each finding
as a defaulted, validated Config field. Defaults are the previously
hardcoded values throughout, so no deployment or golden changes.

- tool-fs (had NO Config): readLimit, readMaxLineLength, readMaxBytes,
  readStreamMinSize. The caps thread through ReadToolCaps/ReadWindow —
  read-render already documented that the consumer applies the caps, so
  they become explicit per-request fields.
- tool-web: searchMaxResults (WEB_SEARCH_MAX_RESULTS stays as the
  schemastery default). Also fixes the stale GREP_LIMIT references in
  search.ts and the web-capability-seam RFC (no such constant exists).
- bash-local: graceMs (SIGTERM->SIGKILL escalation grace). The
  RunInternals.graceMs test seam is gone: graceMs is now a required
  SpawnSpec field filled from config, so tests exercise the real
  config path and the defaults live in exactly one place.
- subagent-acp: disposeEofGraceMs / disposeGraceMs. The AcpRunSpec
  fields become required for the same one-defaulting-layer reason.
- session-persistence-sqlite: journalMode ('wal' default; the
  rollback-journal modes serve filesystems where WAL's shared-memory
  files do not work, e.g. network mounts).
- hooks-claude + hooks-codex: stderrSummaryMaxChars for the persisted
  hook/result stderr summary. The duplicated summarize() helpers merge
  into hook-protocol's summarizeStderr(stderr, maxChars), beside the
  HookResultRecord field it feeds, with the bound parameterized the
  same way runHook's defaultTimeoutMs already is.
- compact-basic: charsPerToken for the token estimator (default 4, the
  English-text heuristic; CJK-heavy deployments need ~1-2 or compaction
  fires far too late). Also corrects the BasicCompactService class doc,
  which claimed defaults the required-field config never had.
- fs-local: deletes the dead STREAM_MIN_SIZE constant and the dead
  FsIoInternals.streamMinSize seam — the read-routing bound lives in
  the consumer (tool-fs), where it is now config. This is item 1 of
  the proposed prune-write-only-fs-surface RFC, annotated accordingly.

Every new field gets range validation (following the existing
assertPositiveFinite pattern), a README row, and tests covering the
configured behavior, the schema default, and load-time rejection.
2026-07-04 17:37:23 +08:00
Hypatia May
9cc8dc371e Merge remote-tracking branch 'origin/master' into session-surface
Reconciles the session-surface work (surfaceOp/sourceEventSeqs provenance as
the sole derivation path) with master's worktree-subagent series (fork-seed
boundary + out-of-process subagent backends).

Semantic reconciliations beyond the textual auto-merge:
- SQLite SCHEMA_VERSION: both sides bumped 2->3. Merged to a single v3 carrying
  BOTH column families — master's seed_length on `sessions` and surface's
  source_event_seqs/surface_op on `events`. writeRow + both INSERT sites bind
  the full set; the schema doc lists all three added columns as the v2->v3 gap.
- agent-loop runStep request: master's `sessionId: session.id` and surface's
  per-append surfaceOp/sourceEventSeqs coexist (different regions).
- Fork seed + surface: a fork seeds the child from the parent's LIVE events,
  which now carry surfaceOp, so the child's surface rebuilds correctly. Verified
  end-to-end — the subagent-fork replay recalls the inherited "SAFFRON" codeword
  through the seeded prefix.
- Subagent snapshot fixtures (recorded pre-surface) re-enriched via KEYLESS
  deterministic replay: only surfaceOp/sourceEventSeqs added onto existing
  recorded lines (matched by seq), no recorded value changed. Not re-recorded
  against the live API.

Gates: typecheck, test (1112), test:snapshot (14), doc-sync, lint, build,
hygiene all green.
2026-06-24 10:48:01 +08:00
Tianyi Cui
b3d40d427e Persist the seed boundary so fork-child replay routes correctly
A fork subagent seeds its child session with a prefix of the parent's log, and
that seed becomes the child's persisted log — so a fork child's .jsonl begins
with the PARENT's events, including the parent's assistant/chunk events. The
snapshot replay harness derived a child's script from its whole log, which would
replay the parent's recorded responses as the child's model calls. Spawn-only
scenarios never hit it, but a fork snapshot would mis-route silently.

Record the seed boundary and skip the inherited prefix at replay:

- SessionHeader gains an optional `seedLength` (how many leading events were
  inherited via a seed), threaded through CreateSessionOptions/CreateAgentOptions
  meta and stamped by the fork backend (= seeded-prefix length; absent for spawn).
  It is EXPLICIT, never inferred from seed.length: a resume seeds the whole stored
  log, so the resume path passes the persisted boundary back.
- Both persistence backends round-trip it: JSONL header line, SQLite seed_length
  column. The SQLite table change bumps SCHEMA_VERSION 2->3; per the pre-release
  stance the backend rejects an older user_version on open with NO migration.
- llm-replay's parseSessionHeader reads seedLength and loadSessionScripts derives
  a child script from events AFTER the boundary. seedLength is 0 for spawn, so
  spawn replay is byte-for-byte unchanged.

Closes the routing-correctness gap the per-session snapshot replay RFC under-
stated; a recorded fork scenario remains a future addition but now derives
correctly. RFC: docs/rfc/implemented/testing/2026-06-22-fork-child-replay-seed-boundary.md.

Regression coverage: a fork child fixture whose seeded prefix carries a parent
chunk (derived script must exclude it, proven red without the slice); a seedLength
persistence round-trip through the shared coordinator contract (both backends);
the fork backend stamping it; resume preserving it from the persisted header.
2026-06-22 20:55:32 +08:00
Hypatia May
0298f5c6f0 Merge remote-tracking branch 'origin/master' into session-surface
Reconcile the session-surface feature with master's package reorg and
simplifications:

- Adopt master's folded usage (assistant/message.usage; standalone `usage`
  event dropped) and re-attach surface metadata (surfaceOp/sourceEventSeqs).
- Add surface opts to master's new max-tokens assistant/message append.
- Port surface columns onto the coordinator-refactored SQLite backend at its
  new path; drop the dead v1->v2 migration (bump-and-reject, no migration per
  pre-release policy).
- Move the session-surface RFC into implemented/architecture/ and refresh its
  stale body (no migration, SESSION_FORMAT_VERSION=0, renamed package paths).
- Update the core-data-structures catalog SessionEvent blocks for the two new
  surface fields; regenerate the cordis catalog.
- Re-harvest ACP snapshot fixtures (keyless replay) to carry surface metadata.
2026-06-22 10:35:59 +08:00
Tianyi Cui
7792347c4f simplify(seams): prune dead methods from the persistence and bash seams
Two capability seams carried abstract methods no production consumer calls.
A method no consumer programs against is not a seam — it is speculative
surface every implementation must still provide and test.

- SessionPersistence: remove has() and delete(), the coordinator's
  has/delete/deleteCore, and the PersistenceBackend.deleteStored hook (with its
  jsonl + sqlite + in-spec memory-stub impls). Surviving service surface:
  create/append/load/list. Production uses only load() (resume) and list()
  (ACP session/list).
- BashExecutor: remove get(id) and list(), the abstract decls and the
  LocalBashExecutor impls. The internal tasks map survives (it backs
  ownerOf/readOutput/kill); get/list were pure public accessors over it with no
  shipping caller and no bash_list tool.
- Migrate tests that reached through ctx.bash.get(id) to the public completion
  seam: a doneFor(id) helper over onTaskDone awaits a task by id, and the
  HMR-reload ownership test now proves task survival through A's own bash_output
  ([status: running]) plus ownerOf + B-rejection — a stronger through-the-tool
  assertion than the removed lookup peek.
- Update seam READMEs (six -> four service methods, drop the deleteStored hook
  and the get/list row) and the two implemented persistence RFCs in place.

Implements docs/rfc/implemented/simplification/2026-06-20-prune-dead-seam-methods.md
2026-06-21 02:17:27 +08:00
Tianyi Cui
d02e9f1bd6 Reorganize packages into a modular hierarchy
Move the 18 flat packages/<name> packages into role-grouped dirs:
core/, llm/, bash/, session-persistence/, ui/, support/. Group dirs are
pure containers; each package keeps its @deepseek-ai/dsh-* name.

Collapse the per-package tsconfig paths maps (base + typecheck) into one
@deepseek-ai/dsh-* wildcard with a candidate per group, and derive the
publint list from the hierarchy. Update all depth-coupled globs/configs
(workspace, tsdown, vitest, eslint, knip, tsconfig includes/refs,
per-package tsconfigs, generators, doc-script scopes, type-equiv manifest)
and the cross-package/script relative imports in tests.

Fix doc-typecheck's workspacePaths() to parse tsconfig JSONC via the
TypeScript API instead of a regex comment-strip, which corrupted the
new wildcard `/*/` path candidates.

WIP: doc cross-links and package/RFC docs still to update.
2026-06-20 22:55:20 +08:00