The profile rework left references to the old entry modes behind. Renames
the user patch-layer API and its spec file (watchPersonalPatches ->
watchUserPatches, personal-config.spec.ts -> user-patches.spec.ts) and
retargets the prose that still named `config.yaml`, `--config`, raw-config
mode, and surface overlays: repository-plugin and mcp-memory READMEs, the
credentials-local anchor into app-boot, vendor manifest items 12-13, the
vendored include/hmr comments, and install.sh.
Restores the boot-failure guard the rework dropped with raw mode: the
built-bin case now boots `--profile web --patch <invalid>` and asserts the
settled diagnostic and exit 1, so the HMR initial-scan deadlock stays
covered; its orphaned raw fixture is renamed and the unused one deleted.
The superseded personal-config Agent Note and its superseding profile note
are now cross-linked.
Master's transactional loader made the invalid-provider PTY case regress:
the HMR main watcher's initial scan refreshed the include mid-initial-apply,
the concurrent group updates stranded the include fiber, and once serialized
the failing apply's rollback deadlocked on HMR's refresh drain — dsh exited
13 with no diagnostic and the terminal stranded, the exact symptom this
branch fixes. Serialize every include child-tree mutation through one queue
and pass ignoreInitial to the HMR main watcher; the failing boot now settles
through boot()'s labelled rejection with the tree disposed and exit 1. The
PTY case asserts the settled diagnostic; the fail-loud release remains the
guard for rejections boot cannot see.
