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Merge remote-tracking branch 'origin/master' into codex/project-instruction-files

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# Conflicts:
#	docs/config-catalog.md
#	docs/cordis-catalog/events.md
#	docs/cordis-catalog/services.md
#	docs/core-data-structures/core.md
#	docs/event-producer-consumer.md
#	docs/persistence-catalog.md
#	docs/rfc/implemented/feature/2026-06-15-code-mode.md
#	docs/rfc/implemented/feature/2026-06-30-interception-seams.md
#	docs/rfc/proposed/simplification/2026-07-04-prune-dead-core-spine-surface.md
#	docs/tool-execution-pipeline.md
#	packages/cordis/tool-cordis/src/api-catalog.ts
#	packages/core/agent-core/tests/agent-core.spec.ts
#	packages/core/agent-loop/src/agent.ts
#	packages/core/agent/README.md
#	packages/core/session/src/index.ts
#	packages/core/tools/README.md
#	packages/core/tools/src/index.ts
#	pnpm-lock.yaml
#	scripts/gen-doc-graphs.ts
#	scripts/type-equiv.manifest.json
This commit is contained in:
Yichen Jiang
2026-07-13 14:37:32 +08:00
parent 4e47a7c1bf b3e1a4154b
commit adf6b8a1ab
243 changed files with 14538 additions and 4798 deletions
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32
docs/module-graph.md
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@@ -21,6 +21,7 @@ flowchart TD
pkg_agent["agent"]
pkg_agent_core["agent-core"]
pkg_agent_loop["agent-loop"]
pkg_scope["scope"]
pkg_session["session"]
pkg_system_prompt["system-prompt"]
pkg_tools["tools"]
@@ -122,13 +123,16 @@ flowchart TD
pkg_llm_pi_ai --> pkg_llm
pkg_session --> pkg_brand
pkg_session --> pkg_llm
pkg_session --> pkg_scope
pkg_system_prompt --> pkg_llm
pkg_system_prompt --> pkg_scope
pkg_fs --> pkg_brand
pkg_fs --> pkg_llm
pkg_web --> pkg_llm
pkg_sandbox --> pkg_llm
pkg_agent --> pkg_brand
pkg_agent --> pkg_llm
pkg_agent --> pkg_scope
pkg_agent --> pkg_session
pkg_agent --> pkg_system_prompt
pkg_bash --> pkg_brand
@@ -164,10 +168,12 @@ flowchart TD
pkg_session_persistence_sqlite --> pkg_session_persistence
pkg_invariants --> pkg_agent
pkg_invariants --> pkg_llm
pkg_invariants --> pkg_scope
pkg_invariants --> pkg_session
pkg_user_approval --> pkg_agent
pkg_user_approval --> pkg_brand
pkg_user_approval --> pkg_llm
pkg_user_approval --> pkg_scope
pkg_user_approval --> pkg_session
pkg_user_approval --> pkg_system_prompt
pkg_user_interaction --> pkg_agent
@@ -178,6 +184,7 @@ flowchart TD
pkg_tools --> pkg_agent
pkg_tools --> pkg_code_runtime
pkg_tools --> pkg_llm
pkg_tools --> pkg_scope
pkg_tools --> pkg_session
pkg_tools --> pkg_system_prompt
pkg_tools --> pkg_user_approval
@@ -186,6 +193,7 @@ flowchart TD
pkg_bash_sandbox --> pkg_sandbox
pkg_agent_loop --> pkg_agent
pkg_agent_loop --> pkg_llm
pkg_agent_loop --> pkg_scope
pkg_agent_loop --> pkg_session
pkg_agent_loop --> pkg_session_persistence
pkg_agent_loop --> pkg_system_prompt
@@ -208,6 +216,7 @@ flowchart TD
pkg_tool_skill --> pkg_tools
pkg_subagent --> pkg_agent
pkg_subagent --> pkg_llm
pkg_subagent --> pkg_scope
pkg_subagent --> pkg_tools
pkg_tool_web --> pkg_llm
pkg_tool_web --> pkg_system_prompt
@@ -219,6 +228,7 @@ flowchart TD
pkg_tool_todo --> pkg_agent
pkg_tool_todo --> pkg_session
pkg_tool_todo --> pkg_tools
pkg_tool_cordis --> pkg_scope
pkg_tool_cordis --> pkg_tools
pkg_hooks_codex --> pkg_agent
pkg_hooks_codex --> pkg_hook_protocol
@@ -288,6 +298,7 @@ flowchart TD
pkg_workflow_workerthread --> pkg_agent
pkg_workflow_workerthread --> pkg_brand
pkg_workflow_workerthread --> pkg_llm
pkg_workflow_workerthread --> pkg_session
pkg_workflow_workerthread --> pkg_subagent
pkg_workflow_workerthread --> pkg_tools
pkg_workflow_workerthread --> pkg_workflow
@@ -321,6 +332,7 @@ flowchart TD
| [`brand`](../packages/util/brand) | `util` | — |
| [`paths`](../packages/util/paths) | `util` | — |
| [`timeout`](../packages/util/timeout) | `util` | — |
| [`scope`](../packages/core/scope) | `core` | — |
| [`skill`](../packages/skill/skill) | `skill` | — |
| [`subagent-subprocess`](../packages/subagent/subagent-subprocess) | `subagent` | — |
| [`acp-snapshot`](../packages/support/acp-snapshot) | `support` | — |
@@ -330,12 +342,12 @@ flowchart TD
| [`code-runtime-worker`](../packages/code-runtime/code-runtime-worker) | `code-runtime` | [`code-runtime`](../packages/code-runtime/code-runtime) |
| [`llm-deepseek`](../packages/llm/llm-deepseek) | `llm` | [`llm`](../packages/llm/llm) |
| [`llm-pi-ai`](../packages/llm/llm-pi-ai) | `llm` | [`llm`](../packages/llm/llm) |
| [`session`](../packages/core/session) | `core` | [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm) |
| [`system-prompt`](../packages/core/system-prompt) | `core` | [`llm`](../packages/llm/llm) |
| [`session`](../packages/core/session) | `core` | [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope) |
| [`system-prompt`](../packages/core/system-prompt) | `core` | [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope) |
| [`fs`](../packages/fs/fs) | `fs` | [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm) |
| [`web`](../packages/web/web) | `web` | [`llm`](../packages/llm/llm) |
| [`sandbox`](../packages/sandbox/sandbox) | `sandbox` | [`llm`](../packages/llm/llm) |
| [`agent`](../packages/core/agent) | `core` | [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt) |
| [`agent`](../packages/core/agent) | `core` | [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt) |
| [`bash`](../packages/bash/bash) | `bash` | [`brand`](../packages/util/brand), [`sandbox`](../packages/sandbox/sandbox), [`session`](../packages/core/session) |
| [`fs-local`](../packages/fs/fs-local) | `fs` | [`fs`](../packages/fs/fs) |
| [`fs-policy`](../packages/fs/fs-policy) | `fs` | [`fs`](../packages/fs/fs) |
@@ -353,21 +365,21 @@ flowchart TD
| [`hook-protocol`](../packages/hooks/hook-protocol) | `hooks` | [`bash`](../packages/bash/bash), [`session`](../packages/core/session) |
| [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl) | `session-persistence` | [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence) |
| [`session-persistence-sqlite`](../packages/session-persistence/session-persistence-sqlite) | `session-persistence` | [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence) |
| [`invariants`](../packages/support/invariants) | `support` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`session`](../packages/core/session) |
| [`user-approval`](../packages/ui/user-approval) | `ui` | [`agent`](../packages/core/agent), [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt) |
| [`invariants`](../packages/support/invariants) | `support` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session) |
| [`user-approval`](../packages/ui/user-approval) | `ui` | [`agent`](../packages/core/agent), [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt) |
| [`user-interaction`](../packages/ui/user-interaction) | `ui` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm) |
| [`workflow`](../packages/workflow/workflow) | `workflow` | [`agent`](../packages/core/agent), [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm) |
| [`tools`](../packages/core/tools) | `core` | [`agent`](../packages/core/agent), [`code-runtime`](../packages/code-runtime/code-runtime), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt), [`user-approval`](../packages/ui/user-approval) |
| [`tools`](../packages/core/tools) | `core` | [`agent`](../packages/core/agent), [`code-runtime`](../packages/code-runtime/code-runtime), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt), [`user-approval`](../packages/ui/user-approval) |
| [`bash-sandbox`](../packages/bash/bash-sandbox) | `bash` | [`bash`](../packages/bash/bash), [`bash-local`](../packages/bash/bash-local), [`sandbox`](../packages/sandbox/sandbox) |
| [`agent-loop`](../packages/core/agent-loop) | `core` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools) |
| [`agent-loop`](../packages/core/agent-loop) | `core` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools) |
| [`tool-bash`](../packages/bash/tool-bash) | `bash` | [`agent`](../packages/core/agent), [`bash`](../packages/bash/bash), [`llm`](../packages/llm/llm), [`sandbox`](../packages/sandbox/sandbox), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools), [`user-approval`](../packages/ui/user-approval) |
| [`tool-fs`](../packages/fs/tool-fs) | `fs` | [`fs`](../packages/fs/fs), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools) |
| [`tool-skill`](../packages/skill/tool-skill) | `skill` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`skill`](../packages/skill/skill), [`tools`](../packages/core/tools) |
| [`subagent`](../packages/subagent/subagent) | `subagent` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`tools`](../packages/core/tools) |
| [`subagent`](../packages/subagent/subagent) | `subagent` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`scope`](../packages/core/scope), [`tools`](../packages/core/tools) |
| [`tool-web`](../packages/web/tool-web) | `web` | [`llm`](../packages/llm/llm), [`system-prompt`](../packages/core/system-prompt), [`tools`](../packages/core/tools), [`web`](../packages/web/web) |
| [`timeout-policy`](../packages/timeout/timeout-policy) | `timeout` | [`llm`](../packages/llm/llm), [`timeout`](../packages/util/timeout), [`tools`](../packages/core/tools) |
| [`tool-todo`](../packages/todo/tool-todo) | `todo` | [`agent`](../packages/core/agent), [`session`](../packages/core/session), [`tools`](../packages/core/tools) |
| [`tool-cordis`](../packages/cordis/tool-cordis) | `cordis` | [`tools`](../packages/core/tools) |
| [`tool-cordis`](../packages/cordis/tool-cordis) | `cordis` | [`scope`](../packages/core/scope), [`tools`](../packages/core/tools) |
| [`hooks-codex`](../packages/hooks/hooks-codex) | `hooks` | [`agent`](../packages/core/agent), [`hook-protocol`](../packages/hooks/hook-protocol), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`tools`](../packages/core/tools) |
| [`acp`](../packages/ui/acp) | `ui` | [`agent`](../packages/core/agent), [`bash`](../packages/bash/bash), [`llm`](../packages/llm/llm), [`sandbox`](../packages/sandbox/sandbox), [`session`](../packages/core/session), [`session-persistence`](../packages/session-persistence/session-persistence), [`tools`](../packages/core/tools), [`user-approval`](../packages/ui/user-approval), [`user-interaction`](../packages/ui/user-interaction) |
| [`tool-ask-user`](../packages/ui/tool-ask-user) | `ui` | [`agent`](../packages/core/agent), [`tools`](../packages/core/tools), [`user-interaction`](../packages/ui/user-interaction) |
@@ -380,7 +392,7 @@ flowchart TD
| [`tool-subagent`](../packages/subagent/tool-subagent) | `subagent` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`subagent`](../packages/subagent/subagent), [`tools`](../packages/core/tools) |
| [`hooks-claude`](../packages/hooks/hooks-claude) | `hooks` | [`agent`](../packages/core/agent), [`hook-protocol`](../packages/hooks/hook-protocol), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`subagent`](../packages/subagent/subagent), [`tools`](../packages/core/tools) |
| [`subagent-mock`](../packages/support/subagent-mock) | `support` | [`agent`](../packages/core/agent), [`llm`](../packages/llm/llm), [`subagent`](../packages/subagent/subagent) |
| [`workflow-workerthread`](../packages/workflow/workflow-workerthread) | `workflow` | [`agent`](../packages/core/agent), [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`subagent`](../packages/subagent/subagent), [`tools`](../packages/core/tools), [`workflow`](../packages/workflow/workflow) |
| [`workflow-workerthread`](../packages/workflow/workflow-workerthread) | `workflow` | [`agent`](../packages/core/agent), [`brand`](../packages/util/brand), [`llm`](../packages/llm/llm), [`session`](../packages/core/session), [`subagent`](../packages/subagent/subagent), [`tools`](../packages/core/tools), [`workflow`](../packages/workflow/workflow) |
| [`subagent-fork`](../packages/subagent/subagent-fork) | `subagent` | [`agent`](../packages/core/agent), [`session`](../packages/core/session), [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
| [`subagent-spawn`](../packages/subagent/subagent-spawn) | `subagent` | [`subagent`](../packages/subagent/subagent), [`subagent-inprocess`](../packages/subagent/subagent-inprocess) |
| [`acp-agent`](../packages/ui/acp-agent) | `ui` | [`acp`](../packages/ui/acp), [`agent-core`](../packages/core/agent-core), [`app-boot`](../packages/ui/app-boot), [`session-persistence-jsonl`](../packages/session-persistence/session-persistence-jsonl), [`tools`](../packages/core/tools), [`user-interaction`](../packages/ui/user-interaction), [`workspace-context`](../packages/prompt/workspace-context) |