import matplotlib.pyplot as plt
import numpy as np
from sklearn.datasets import load_digits
from sklearn.model_selection import ShuffleSplit
from sklearn.model_selection import learning_curve
from sklearn.naive_bayes import GaussianNB
from sklearn.svm import SVC
from clearml import Task
def plot_learning_curve(estimator, title, X, y, axes=None, ylim=None, cv=None, n_jobs=None,
train_sizes=np.linspace(.1, 1.0, 5)):
"""
Generate 3 plots: the test and training learning curve, the training
samples vs fit times curve, the fit times vs score curve.
Parameters
----------
estimator : object type that implements the "fit" and "predict" methods
An object of that type which is cloned for each validation.
title : string
Title for the chart.
X : array-like, shape (n_samples, n_features)
Training vector, where n_samples is the number of samples and
n_features is the number of features.
y : array-like, shape (n_samples) or (n_samples, n_features), optional
Target relative to X for classification or regression;
None for unsupervised learning.
axes : array of 3 axes, optional (default=None)
Axes to use for plotting the curves.
ylim : tuple, shape (ymin, ymax), optional
Defines minimum and maximum yvalues plotted.
cv : int, cross-validation generator or an iterable, optional
Determines the cross-validation splitting strategy.
Possible inputs for cv are:
- None, to use the default 5-fold cross-validation,
- integer, to specify the number of folds.
- :term:`CV splitter`,
- An iterable yielding (train, test) splits as arrays of indices.
For integer/None inputs, if ``y`` is binary or multiclass,
:class:`StratifiedKFold` used. If the estimator is not a classifier
or if ``y`` is neither binary nor multiclass, :class:`KFold` is used.
Refer :ref:`User Guide <cross_validation>` for the various
cross-validators that can be used here.
n_jobs : int or None, optional (default=None)
Number of jobs to run in parallel.
``None`` means 1 unless in a :obj:`joblib.parallel_backend` context.
``-1`` means using all processors. See :term:`Glossary <n_jobs>`
for more details.
train_sizes : array-like, shape (n_ticks,), dtype float or int
Relative or absolute numbers of training examples that will be used to
generate the learning curve. If the dtype is float, it is regarded as a
fraction of the maximum size of the training set (that is determined
by the selected validation method), i.e. it has to be within (0, 1].
Otherwise it is interpreted as absolute sizes of the training sets.
Note that for classification the number of samples usually have to
be big enough to contain at least one sample from each class.
(default: np.linspace(0.1, 1.0, 5))
"""
if axes is None:
_, axes = plt.subplots(1, 3, figsize=(20, 5))
axes[0].set_title(title)
if ylim is not None:
axes[0].set_ylim(*ylim)
axes[0].set_xlabel("Training examples")
axes[0].set_ylabel("Score")
train_sizes, train_scores, test_scores, fit_times, _ = \
learning_curve(estimator, X, y, cv=cv, n_jobs=n_jobs,
train_sizes=train_sizes,
return_times=True)
train_scores_mean = np.mean(train_scores, axis=1)
train_scores_std = np.std(train_scores, axis=1)
test_scores_mean = np.mean(test_scores, axis=1)
test_scores_std = np.std(test_scores, axis=1)
fit_times_mean = np.mean(fit_times, axis=1)
fit_times_std = np.std(fit_times, axis=1)
# Plot learning curve
axes[0].grid()
axes[0].fill_between(train_sizes, train_scores_mean - train_scores_std,
train_scores_mean + train_scores_std, alpha=0.1,
color="r")
axes[0].fill_between(train_sizes, test_scores_mean - test_scores_std,
test_scores_mean + test_scores_std, alpha=0.1,
color="g")
axes[0].plot(train_sizes, train_scores_mean, 'o-', color="r",
label="Training score")
axes[0].plot(train_sizes, test_scores_mean, 'o-', color="g",
label="Cross-validation score")
axes[0].legend(loc="best")
# Plot n_samples vs fit_times
axes[1].grid()
axes[1].plot(train_sizes, fit_times_mean, 'o-')
axes[1].fill_between(train_sizes, fit_times_mean - fit_times_std,
fit_times_mean + fit_times_std, alpha=0.1)
axes[1].set_xlabel("Training examples")
axes[1].set_ylabel("fit_times")
axes[1].set_title("Scalability of the model")
# Plot fit_time vs score
axes[2].grid()
axes[2].plot(fit_times_mean, test_scores_mean, 'o-')
axes[2].fill_between(fit_times_mean, test_scores_mean - test_scores_std,
test_scores_mean + test_scores_std, alpha=0.1)
axes[2].set_xlabel("fit_times")
axes[2].set_ylabel("Score")
axes[2].set_title("Performance of the model")
return plt
# Connecting ClearML with the current process,
# from here on everything is logged automatically
Task.init('examples', 'scikit-learn matplotlib example')
fig, fig_axes = plt.subplots(1, 3, figsize=(30, 10))
X, y = load_digits(return_X_y=True)
title = "Learning Curves (Naive Bayes)"
# Cross validation with 100 iterations to get smoother mean test and train
# score curves, each time with 20% data randomly selected as a validation set.
cv = ShuffleSplit(n_splits=100, test_size=0.2, random_state=0)
estimator = GaussianNB()
plot_learning_curve(estimator, title, X, y, axes=fig_axes, ylim=(0.7, 1.01), cv=cv, n_jobs=4)
plt.show()
fig, fig_axes = plt.subplots(1, 3, figsize=(30, 10))
title = r"Learning Curves (SVM, RBF kernel, $\gamma=0.001$)"
# SVC is more expensive so we do a lower number of CV iterations:
cv = ShuffleSplit(n_splits=10, test_size=0.2, random_state=0)
estimator = SVC(gamma=0.001)
plot_learning_curve(estimator, title, X, y, axes=fig_axes, ylim=(0.7, 1.01), cv=cv, n_jobs=4)
plt.show()
print('done')